Rw2G015800

Belongs to the glycosyl hydrolase 43 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004682
Physical Location & Seq
Reverse (-)
18439024 .. 18443664
4641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015800.1

Sequence Viewer

Length: 1290 bp
ATGAGGATGAGGAACAAATACAGGAAACCAACCACTTTCCGTTGCCATGCAGGGAGCAGATGTTCAATATCTGCTGTGGTGTGGAGCTTAGTAGGATGTCTTCTTATGTTTCATTTCTACTCCCTGGTTCACCGGAAGGATGGGATGGGCAGAGAAATTCAATTTGGAGCAAGTCACCACCCACAGTTACGTGAACTGGAAAAGGTTGAAGAGGAAAGTATCCACATTCCTCCACCAAGAAAGCGATCCCCACGTGCTGCAAAAAGAAAACCTAAGCGACCCACCACAATAATCGATGAATTTCTTGATGAGAATTCTCAAATTCGGCATGTATTCTTTCCTGATCAGAAACTTGCTGTAGATCCGATGAAGGATGCGGGGAATGATAGCTATTACTATTACCCTGGAAGGATTTGGTTGGATACTGAAGGAAATCCTATTCAAGCCCATGGAGGTGGTATTCTATATGATGAAAAATCAGGAACATACTATTGGTATGGGGAGTATAAAGATGGGCCTACATACCATGCTCACAAAAAAGGAGCAGCCCGGGTTGACATCTTAGGAGTCGGTTGTTATTCTTCCAAGGACTTATGGAAATGGAACAATGAAGGTATTGTACTAGCAGCAGAAAAAACAAACGAAACACATGATCTCCACGAGTTGAATGTTCTTGAGAGGCCAAAAGTGATTTACAATCACAAGACAGCGAAGTATGTAATGTGGATGCATATTGATGATGTCAACTACACCAAAGCTTCAGTTGGCATTGCCATCAGTGATTACCCAACTGGTCCTTTTGATTATCTCTATAGCAAACGGCCCCATGGATTTGAAAGTAGGGACATGACAATCTTCAAAGATGATGACGGTATTGCATATCTAATATACTCCTCTGAGGACAATAGTGAACTTCACATTGGACCTCTAACTGAAGATTATCTTGATGTGACCAACATCATGAGAAGAATTCTTGTGGGACAGCATCGAGAAGCCCCAGCTCTGTTCAAGCATGAGGGAACTTATTACATGATCACTTCAGGCTGCACAGGATGGGCACCAAATGAAGCACTGGCACATGCAGCAGAGTCAATCATGGGGCCATGGGAGACTATGGGAAACCCCTGCATAGGAGGGAACAAAATGGCTCGACTTACAACAGAGCACATTTGTGATACCTTTACCAGGATTTCCTGGTTCATTTATTTTCATGGCAGACAGATGGAACCCCGCAGACTTGAGAGACTCAAGATATGTATGGTTGCCCTTGATAGTAGGGGGGCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_43

Protein Analysis

429

Amino Acids

49.36

Weight (kDa)

7.68

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_43 PF04616 185 - 407 2.8e-17 Glycosyl hydrolases family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1057
AciI CCGC 2 cut(s) 377, 1231
AclWI GGATC 2 cut(s) 240, 356
AcsI RAATTY 5 cut(s) 156, 299, 313, 321, 969
AcuI CTGAAG 4 cut(s) 447, 744, 954, 1023
AcvI CACGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 1130, 1185
AgsI TTSAA 8 cut(s) 66, 161, 209, 443, 667, 836, 859, 1009
AjnI CCWGG 4 cut(s) 123, 403, 1184, 1193
AjuI GAANNNNNNNTTGG 6 cut(s) 147, 179, 475, 507, 903, 935
AleI CACNNNNGTG 1 cut(s) 1170
AloI GAACNNNNNNTCC 2 cut(s) 46, 78
AluBI AGCT 4 cut(s) 87, 390, 758, 1001
AluI AGCT 4 cut(s) 87, 390, 758, 1001
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 2 cut(s) 1103, 1237
AlwI GGATC 2 cut(s) 240, 356
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 5 cut(s) 515, 680, 821, 1100, 1281
ApeKI GCWGC 5 cut(s) 257, 545, 626, 1044, 1082
ApoI RAATTY 5 cut(s) 156, 299, 313, 321, 969
AspS9I GGNCC 6 cut(s) 515, 794, 822, 923, 1100, 1281
AsuC2I CCSGG 2 cut(s) 550, 551
AsuHPI GGTGA 2 cut(s) 122, 167
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 2 cut(s) 794, 923
BaeGI GKGCMC 1 cut(s) 1060
BanI GGYRCC 1 cut(s) 1057
BarI GAAGNNNNNNTAC 4 cut(s) 84, 116, 603, 635
BauI CACGAG 1 cut(s) 659
BbrPI CACGTG 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 5 cut(s) 244, 557, 638, 1031, 1094
BccI CCATC 6 cut(s) 134, 139, 506, 782, 1047, 1216
BceAI ACGGC 1 cut(s) 836
BciT130I CCWGG 4 cut(s) 125, 405, 1186, 1195
BciVI GTATCC 2 cut(s) 230, 415
BclI TGATCA 2 cut(s) 343, 1032
BcnI CCSGG 2 cut(s) 550, 551
BcoDI GTCTC 2 cut(s) 1103, 1237
BfaI CTAG 1 cut(s) 623
BfmI CTRYAG 2 cut(s) 357, 811
BfuI GTATCC 2 cut(s) 230, 415
BisI GCNGC 5 cut(s) 258, 546, 627, 1045, 1083
BlsI GCNGC 5 cut(s) 259, 547, 628, 1046, 1084
Bme1390I CCNGG 6 cut(s) 125, 405, 550, 551, 1186, 1195
Bme18I GGWCC 2 cut(s) 794, 923
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 6 cut(s) 515, 794, 822, 923, 1100, 1281
BmiI GGNNCC 5 cut(s) 824, 1059, 1101, 1227, 1282
BmrFI CCNGG 6 cut(s) 125, 405, 550, 551, 1186, 1195
BmsI GCATC 3 cut(s) 364, 717, 994
BpiI GAAGAC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 695, 1232, 1259
BpuMI CCSGG 2 cut(s) 550, 551
Bsa29I ATCGAT 1 cut(s) 294
BsaAI YACGTR 2 cut(s) 191, 254
BsaJI CCNNGG 7 cut(s) 123, 403, 448, 549, 585, 826, 1103
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 639, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 1130, 1185
Bse1I ACTGG 4 cut(s) 201, 796, 1077, 1284
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 4 cut(s) 125, 405, 1186, 1195
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 7 cut(s) 123, 403, 448, 549, 585, 826, 1103
BseGI GGATG 7 cut(s) 12, 101, 145, 150, 379, 732, 1058
BseLI CCNNNNNNNGG 2 cut(s) 1130, 1185
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 4 cut(s) 201, 796, 1077, 1284
BseRI GAGGAG 1 cut(s) 883
BseSI GKGCMC 1 cut(s) 1060
BseXI GCAGC 5 cut(s) 244, 557, 638, 1031, 1094
BseYI CCCAGC 1 cut(s) 997
BsgI GTGCAG 1 cut(s) 1030
BshFI GGCC 5 cut(s) 517, 682, 823, 1102, 1283
BshNI GGYRCC 1 cut(s) 1057
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 1167
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 2 cut(s) 133, 550
BslFI GGGAC 2 cut(s) 857, 993
BslI CCNNNNNNNGG 2 cut(s) 1130, 1185
BsmAI GTCTC 2 cut(s) 1103, 1237
BsmFI GGGAC 2 cut(s) 857, 993
BsnI GGCC 5 cut(s) 517, 682, 823, 1102, 1283
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 1060, 1167
Bsp143I GATC 5 cut(s) 245, 343, 361, 652, 1032
Bsp19I CCATGG 3 cut(s) 448, 826, 1103
BspACI CCGC 2 cut(s) 377, 1231
BspANI GGCC 5 cut(s) 517, 682, 823, 1102, 1283
BspCNI CTCAG 1 cut(s) 889
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 5 cut(s) 824, 1059, 1101, 1227, 1282
BspPI GGATC 2 cut(s) 240, 356
BspT107I GGYRCC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 4 cut(s) 201, 796, 1077, 1284
BssECI CCNNGG 7 cut(s) 123, 403, 448, 549, 585, 826, 1103
BssMI GATC 5 cut(s) 245, 343, 361, 652, 1032
BssSI CACGAG 1 cut(s) 659
BssT1I CCWWGG 4 cut(s) 448, 585, 826, 1103
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 4 cut(s) 125, 405, 1186, 1195
Bst4CI ACNGT 2 cut(s) 186, 872
Bst6I CTCTTC 1 cut(s) 204
BstBAI YACGTR 2 cut(s) 191, 254
BstDEI CTNAG 4 cut(s) 88, 273, 562, 897
BstDSI CCRYGG 3 cut(s) 448, 826, 1103
BstENI CCTNNNNNAGG 1 cut(s) 1183
BstF5I GGATG 7 cut(s) 12, 101, 145, 150, 379, 732, 1058
BstKTI GATC 5 cut(s) 248, 346, 364, 655, 1035
BstMAI GTCTC 2 cut(s) 1103, 1237
BstMBI GATC 5 cut(s) 245, 343, 361, 652, 1032
BstMWI GCNNNNNNNGC 1 cut(s) 1082
BstNI CCWGG 4 cut(s) 125, 405, 1186, 1195
BstNSI RCATGY 2 cut(s) 332, 1082
BstSCI CCNGG 6 cut(s) 123, 403, 548, 549, 1184, 1193
BstSFI CTRYAG 2 cut(s) 357, 811
BstSLI GKGCMC 1 cut(s) 1060
BstV1I GCAGC 5 cut(s) 244, 557, 638, 1031, 1094
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 294
BsuI GTATCC 2 cut(s) 230, 415
BsuRI GGCC 5 cut(s) 517, 682, 823, 1102, 1283
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 3 cut(s) 448, 826, 1103
BtsCI GGATG 7 cut(s) 12, 101, 145, 150, 379, 732, 1058
BtsIMutI CAGTG 2 cut(s) 784, 1070
CciI TCATGA 1 cut(s) 960
Cfr13I GGNCC 6 cut(s) 515, 794, 822, 923, 1100, 1281
Cfr9I CCCGGG 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 620
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 4 cut(s) 88, 273, 562, 897
DpnI GATC 5 cut(s) 247, 345, 363, 654, 1034
DpnII GATC 5 cut(s) 245, 343, 361, 652, 1032
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 4 cut(s) 448, 585, 826, 1103
Eco47I GGWCC 2 cut(s) 794, 923
Eco57I CTGAAG 4 cut(s) 447, 744, 954, 1023
Eco72I CACGTG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 549
EcoNI CCTNNNNNAGG 1 cut(s) 1183
EcoRI GAATTC 2 cut(s) 313, 969
EcoRII CCWGG 4 cut(s) 123, 403, 1184, 1193
EcoT14I CCWWGG 4 cut(s) 448, 585, 826, 1103
EcoT22I ATGCAT 1 cut(s) 732
ErhI CCWWGG 4 cut(s) 448, 585, 826, 1103
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 2 cut(s) 857, 993
FauI CCCGC 2 cut(s) 370, 1238
FbaI TGATCA 2 cut(s) 343, 1032
Fnu4HI GCNGC 5 cut(s) 258, 546, 627, 1045, 1083
FokI GGATG 7 cut(s) 19, 108, 152, 157, 386, 739, 1065
Fsp4HI GCNGC 5 cut(s) 258, 546, 627, 1045, 1083
FspBI CTAG 1 cut(s) 623
GluI GCNGC 5 cut(s) 258, 546, 627, 1045, 1083
GsaI CCCAGC 1 cut(s) 1001
HaeIII GGCC 5 cut(s) 517, 682, 823, 1102, 1283
HapII CCGG 2 cut(s) 133, 550
HincII GTYRAC 2 cut(s) 556, 745
HindII GTYRAC 2 cut(s) 556, 745
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 3 cut(s) 567, 1088, 1245
HpaII CCGG 2 cut(s) 133, 550
HphI GGTGA 2 cut(s) 122, 167
Hpy166II GTNNAC 5 cut(s) 130, 194, 556, 745, 911
Hpy188I TCNGA 3 cut(s) 348, 366, 898
Hpy188III TCNNGA 8 cut(s) 305, 341, 480, 674, 944, 961, 989, 1249
Hpy8I GTNNAC 5 cut(s) 130, 194, 556, 745, 911
HpyAV CCTTC 5 cut(s) 130, 364, 402, 422, 605
HpyCH4III ACNGT 2 cut(s) 186, 872
HpyCH4IV ACGT 2 cut(s) 190, 253
HpyCH4V TGCA 7 cut(s) 50, 260, 730, 878, 1047, 1082, 1128
HpyF10VI GCNNNNNNNGC 1 cut(s) 1082
HpyF3I CTNAG 4 cut(s) 88, 273, 562, 897
HpySE526I ACGT 2 cut(s) 190, 253
Ksp22I TGATCA 2 cut(s) 343, 1032
Kzo9I GATC 5 cut(s) 245, 343, 361, 652, 1032
LmnI GCTCC 4 cut(s) 54, 84, 167, 542
Lsp1109I GCAGC 5 cut(s) 244, 557, 638, 1031, 1094
LweI GCATC 3 cut(s) 364, 717, 994
MaeI CTAG 1 cut(s) 623
MaeII ACGT 2 cut(s) 190, 253
MaeIII GTNAC 3 cut(s) 173, 186, 949
MalI GATC 5 cut(s) 247, 345, 363, 654, 1034
MboI GATC 5 cut(s) 245, 343, 361, 652, 1032
MboII GAAGA 6 cut(s) 92, 221, 573, 847, 947, 978
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 1060, 1167
MluCI AATT 6 cut(s) 156, 161, 299, 313, 321, 969
MlyI GAGTC 3 cut(s) 576, 1097, 1239
MmeI TCCRAC 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 732
MslI CAYNNNNRTG 3 cut(s) 453, 735, 1170
MspI CCGG 2 cut(s) 133, 550
MspR9I CCNGG 6 cut(s) 125, 405, 550, 551, 1186, 1195
MvaI CCWGG 4 cut(s) 125, 405, 1186, 1195
MwoI GCNNNNNNNGC 1 cut(s) 1082
NciI CCSGG 2 cut(s) 550, 551
NcoI CCATGG 3 cut(s) 448, 826, 1103
NdeII GATC 5 cut(s) 245, 343, 361, 652, 1032
NlaIV GGNNCC 5 cut(s) 824, 1059, 1101, 1227, 1282
NmuCI GTSAC 2 cut(s) 173, 949
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 2 cut(s) 332, 1082
OliI CACNNNNGTG 1 cut(s) 1170
PagI TCATGA 1 cut(s) 960
PkrI GCNGC 5 cut(s) 259, 547, 628, 1046, 1084
PleI GAGTC 3 cut(s) 575, 1096, 1239
PmaCI CACGTG 1 cut(s) 254
PmlI CACGTG 1 cut(s) 254
PpsI GAGTC 3 cut(s) 575, 1096, 1239
Ppu21I YACGTR 2 cut(s) 191, 254
Psp6I CCWGG 4 cut(s) 123, 403, 1184, 1193
PspCI CACGTG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 997
PspGI CCWGG 4 cut(s) 123, 403, 1184, 1193
PspN4I GGNNCC 5 cut(s) 824, 1059, 1101, 1227, 1282
PspPI GGNCC 6 cut(s) 515, 794, 822, 923, 1100, 1281
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
RseI CAYNNNNRTG 3 cut(s) 453, 735, 1170
SatI GCNGC 5 cut(s) 258, 546, 627, 1045, 1083
Sau3AI GATC 5 cut(s) 245, 343, 361, 652, 1032
Sau96I GGNCC 6 cut(s) 515, 794, 822, 923, 1100, 1281
SchI GAGTC 3 cut(s) 576, 1097, 1239
ScrFI CCNGG 6 cut(s) 125, 405, 550, 551, 1186, 1195
SduI GDGCHC 2 cut(s) 1060, 1167
SfaNI GCATC 3 cut(s) 364, 717, 994
SfcI CTRYAG 2 cut(s) 357, 811
SinI GGWCC 2 cut(s) 794, 923
SmaI CCCGGG 1 cut(s) 551
SmiMI CAYNNNNRTG 3 cut(s) 453, 735, 1170
SmlI CTYRAG 3 cut(s) 674, 1238, 1247
SmoI CTYRAG 3 cut(s) 674, 1238, 1247
Sse9I AATT 6 cut(s) 156, 161, 299, 313, 321, 969
SsiI CCGC 2 cut(s) 377, 1231
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 6 cut(s) 123, 403, 548, 549, 1184, 1193
StyI CCWWGG 4 cut(s) 448, 585, 826, 1103
TaaI ACNGT 2 cut(s) 186, 872
TaiI ACGT 2 cut(s) 193, 256
TaqI TCGA 3 cut(s) 294, 988, 1150
TasI AATT 6 cut(s) 156, 161, 299, 313, 321, 969
TatI WGTACW 1 cut(s) 619
TscAI CASTG 2 cut(s) 784, 1077
TseFI GTSAC 2 cut(s) 173, 949
TseI GCWGC 5 cut(s) 257, 545, 626, 1044, 1082
Tsp45I GTSAC 2 cut(s) 173, 949
TspDTI ATGAA 8 cut(s) 101, 312, 383, 486, 624, 1080, 1189, 1199
TspGWI ACGGA 1 cut(s) 29
TspMI CCCGGG 1 cut(s) 549
TspRI CASTG 2 cut(s) 784, 1077
VpaK11BI GGWCC 2 cut(s) 794, 923
XagI CCTNNNNNAGG 1 cut(s) 1183
XapI RAATTY 5 cut(s) 156, 299, 313, 321, 969
XceI RCATGY 2 cut(s) 332, 1082
XmaI CCCGGG 1 cut(s) 549
XspI CTAG 1 cut(s) 623
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.