Prupe.6G220400_v2.0.a1

Belongs to the glycosyl hydrolase 43 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22613226 .. 22617750
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G220400.2

Sequence Viewer

Length: 1404 bp
ATGAGGATGAGGAACAAATACAGGAAACCAACCACTTTCCATTGCAATGCAGGGAGCAGATGTTCAACGTCTGCTGTGGTGTGGAGCTTGGTGGGATGTTTTCTTATGTTTCAGCTGTACTCCCTTGTTCACCAAAATGATAGGATGCGAGGAGAAATGCAATTTCGATCAACTCATCACCCACAGATCCATGAACTTGAAGAGGTGGAAGAGGAAAATATCCAAATTCCCCCACCAAGAAAGCGATCCCCACGTGCTGCAAAAAGAAAACCTAGGCGACCAACCACTCTGATTGATGAATTTCTTGATGAAAATTCTCAAATTAGACACGTATTCTTCCCTGGCCAGAAGCATGTTATAGATCCAATGAAGGATACAGGGAATGATAGCTATTACTACTACCCTGGGAGGATTTGGTTGGATACTGATGGAAATCCTATTCAAGCTCATGGAGGTGGTATTCTATATGATGACAAATTGAGGACATACTATTGGTATGGGGAGTATAAAGATGGGCCCACATATCATGCTCATAAAAAAGGAGCAGCCCGGGTTGACATCATAGGAGTTGGTTGCTATTCTTCCAGAGACTTATGGAAATGGAAAAATGAAGGCATCGTATTAGCAGCAGAAAAAACAAATGAAACACATGATCTCCACGAATTAAATGTTCTCGAGAGGCCGAAAGTGATCTACAATGAGCGGACAGGGAAGTATGTTATGTGGATGCATATTGATGATGTTAACTACACCAAAGCTGCTGTTGGTATTGCCATTAGTGATTACCCTACTGGTCCTTTTGATTATCTCTATAGCAAACGACCCCATGGATTTGAAAGTAGGGACATGACAATCTTCAAAGATGATGATGGTGTTGCATATCTAATCTACTCCTCCGAGGACAATAGTGAACTTCATATTGGGCCACTGACTGAAGATTATCTTGATGTGACAAACATCATGAGAAGAGTTCTCGTGGGACAACATCGGGAAGCCCCGGCTCTGTTCAAGTATGAAGGAACTTATTACATGATCACTTCAGGATGCACTGGATGGGCTCCAAATGAGGCACTGGCCCATGCAGCAGAGTCGATCATGGGGCCATGGGAGACTATGGGAAACCCCTGTGCGGGAGGGAACAAAGTGTCCCGACTTACTACATTTTTTGCACAGAGCACATTTGTGGTTCCTGTGCCAGCATTTCCTGGTTCATTTATTTTCATTGCAGATCGATGGAACCCGGCAGACTTAAGGGACTCAAGATATGTCTGGTTGCCTTTGATAGTAGGGGGACCGGCTGATAGGCCCCTTGATTACAATTTTGGGTTCCCATTATGGTCAAGAGTGTCAATATATTGGCATAGAAAGTGGAGACTTCCTCGGGGGTGGAGTTCTTCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

53.98

Weight (kDa)

8.07

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 2 cut(s) 703, 1130
AclWI GGATC 3 cut(s) 181, 240, 356
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 3 cut(s) 225, 299, 313
AcuI CTGAAG 2 cut(s) 954, 1023
AcvI CACGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 1129, 1130
AflII CTTAAG 1 cut(s) 1249
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 6 cut(s) 66, 200, 443, 836, 859, 1009
AjnI CCWGG 3 cut(s) 340, 403, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AleI CACNNNNGTG 1 cut(s) 1181
AloI GAACNNNNNNTCC 4 cut(s) 46, 78, 1130, 1162
AluBI AGCT 5 cut(s) 87, 115, 390, 446, 758
AluI AGCT 5 cut(s) 87, 115, 390, 446, 758
Alw21I GWGCWC 1 cut(s) 1178
Alw26I GTCTC 3 cut(s) 582, 1103, 1366
AlwI GGATC 3 cut(s) 181, 240, 356
Ama87I CYCGRG 3 cut(s) 549, 674, 1380
AoxI GGCC 7 cut(s) 343, 515, 680, 923, 1074, 1100, 1304
ApaI GGGCCC 1 cut(s) 519
ApeKI GCWGC 5 cut(s) 257, 545, 626, 758, 1082
ApoI RAATTY 3 cut(s) 225, 299, 313
AspA2I CCTAGG 1 cut(s) 272
AspS9I GGNCC 8 cut(s) 515, 516, 794, 923, 1075, 1100, 1292, 1305
AsuC2I CCSGG 4 cut(s) 550, 551, 998, 1241
AsuHPI GGTGA 2 cut(s) 122, 170
AsuII TTCGAA 1 cut(s) 1397
AvaI CYCGRG 3 cut(s) 549, 674, 1380
AvaII GGWCC 2 cut(s) 794, 1292
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 1 cut(s) 345
BanII GRGCYC 2 cut(s) 519, 1060
BauI CACGAG 1 cut(s) 974
BbrPI CACGTG 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 1178
BbvI GCAGC 5 cut(s) 244, 557, 638, 745, 1094
BccI CCATC 5 cut(s) 422, 506, 863, 1047, 1227
BcgI CGANNNNNNTGC 2 cut(s) 1071, 1105
BciT130I CCWGG 3 cut(s) 342, 405, 1206
BciVI GTATCC 2 cut(s) 367, 415
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 4 cut(s) 550, 551, 998, 1241
BcoDI GTCTC 3 cut(s) 582, 1103, 1366
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 811
BfrI CTTAAG 1 cut(s) 1249
BfuI GTATCC 2 cut(s) 367, 415
BisI GCNGC 5 cut(s) 258, 546, 627, 759, 1083
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 5 cut(s) 259, 547, 628, 760, 1084
Bme1390I CCNGG 7 cut(s) 342, 405, 550, 551, 998, 1206, 1241
Bme18I GGWCC 2 cut(s) 794, 1292
BmeT110I CYCGRG 3 cut(s) 549, 674, 1380
BmgT120I GGNCC 8 cut(s) 515, 516, 794, 923, 1075, 1100, 1292, 1305
BmiI GGNNCC 8 cut(s) 517, 1059, 1101, 1188, 1238, 1293, 1307, 1328
BmrFI CCNGG 7 cut(s) 342, 405, 550, 551, 998, 1206, 1241
BmsI GCATC 4 cut(s) 135, 624, 717, 1034
BplI GAGNNNNNCTC 2 cut(s) 1363, 1395
Bpu14I TTCGAA 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 1243
BpuMI CCSGG 4 cut(s) 550, 551, 998, 1241
Bsa29I ATCGAT 1 cut(s) 1231
BsaAI YACGTR 2 cut(s) 254, 331
BsaBI GATNNNNATC 1 cut(s) 432
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 639, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 1129, 1130
Bse118I RCCGGY 1 cut(s) 1294
Bse1I ACTGG 3 cut(s) 796, 1054, 1077
Bse3DI GCAATG 3 cut(s) 40, 52, 1221
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 342, 405, 1206
BseCI ATCGAT 1 cut(s) 1231
BseGI GGATG 6 cut(s) 12, 101, 150, 732, 1049, 1058
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 1129, 1130
BseMI GCAATG 3 cut(s) 40, 52, 1221
BseNI ACTGG 3 cut(s) 796, 1054, 1077
BseRI GAGGAG 2 cut(s) 165, 883
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 5 cut(s) 244, 557, 638, 745, 1094
BshFI GGCC 7 cut(s) 345, 517, 682, 925, 1076, 1102, 1306
BshVI ATCGAT 1 cut(s) 1231
BsiHKAI GWGCWC 1 cut(s) 1178
BsiHKCI CYCGRG 3 cut(s) 549, 674, 1380
BsiSI CCGG 4 cut(s) 550, 998, 1241, 1295
BslFI GGGAC 5 cut(s) 857, 993, 1132, 1268, 1305
BslI CCNNNNNNNGG 2 cut(s) 1129, 1130
BsmAI GTCTC 3 cut(s) 582, 1103, 1366
BsmFI GGGAC 5 cut(s) 857, 993, 1132, 1268, 1305
BsnI GGCC 7 cut(s) 345, 517, 682, 925, 1076, 1102, 1306
BsoBI CYCGRG 3 cut(s) 549, 674, 1380
Bsp119I TTCGAA 1 cut(s) 1397
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 519, 1060, 1178
Bsp143I GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
Bsp19I CCATGG 2 cut(s) 826, 1103
BspACI CCGC 2 cut(s) 703, 1130
BspANI GGCC 7 cut(s) 345, 517, 682, 925, 1076, 1102, 1306
BspDI ATCGAT 1 cut(s) 1231
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 8 cut(s) 517, 1059, 1101, 1188, 1238, 1293, 1307, 1328
BspPI GGATC 3 cut(s) 181, 240, 356
BspT104I TTCGAA 1 cut(s) 1397
BspTI CTTAAG 1 cut(s) 1249
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 3 cut(s) 40, 52, 1221
BsrFI RCCGGY 1 cut(s) 1294
BsrI ACTGG 3 cut(s) 796, 1054, 1077
BssAI RCCGGY 1 cut(s) 1294
BssMI GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
BssSI CACGAG 1 cut(s) 974
BssT1I CCWWGG 3 cut(s) 272, 826, 1103
Bst2BI CACGAG 1 cut(s) 974
Bst2UI CCWGG 3 cut(s) 342, 405, 1206
Bst6I CTCTTC 3 cut(s) 195, 204, 961
BstAFI CTTAAG 1 cut(s) 1249
BstBAI YACGTR 2 cut(s) 254, 331
BstBI TTCGAA 1 cut(s) 1397
BstC8I GCNNGC 1 cut(s) 1197
BstDSI CCRYGG 2 cut(s) 826, 1103
BstF5I GGATG 6 cut(s) 12, 101, 150, 732, 1049, 1058
BstKTI GATC 9 cut(s) 170, 189, 248, 364, 655, 693, 1035, 1095, 1231
BstMAI GTCTC 3 cut(s) 582, 1103, 1366
BstMBI GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 1082
BstNI CCWGG 3 cut(s) 342, 405, 1206
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 7 cut(s) 340, 403, 548, 549, 996, 1204, 1239
BstSFI CTRYAG 1 cut(s) 811
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 5 cut(s) 244, 557, 638, 745, 1094
BstX2I RGATCY 2 cut(s) 186, 361
BstYI RGATCY 2 cut(s) 186, 361
Bsu15I ATCGAT 1 cut(s) 1231
BsuI GTATCC 2 cut(s) 367, 415
BsuRI GGCC 7 cut(s) 345, 517, 682, 925, 1076, 1102, 1306
BsuTUI ATCGAT 1 cut(s) 1231
BtgI CCRYGG 2 cut(s) 826, 1103
BtsCI GGATG 6 cut(s) 12, 101, 150, 732, 1049, 1058
BtsIMutI CAGTG 3 cut(s) 926, 1047, 1070
Cac8I GCNNGC 1 cut(s) 1197
CciI TCATGA 1 cut(s) 960
Cfr10I RCCGGY 1 cut(s) 1294
Cfr13I GGNCC 8 cut(s) 515, 516, 794, 923, 1075, 1100, 1292, 1305
Cfr9I CCCGGG 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 1231
Csp6I GTAC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviQI GTAC 1 cut(s) 118
DpnI GATC 9 cut(s) 169, 188, 247, 363, 654, 692, 1034, 1094, 1230
DpnII GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 195, 204, 961
EarI CTCTTC 3 cut(s) 195, 204, 961
Eco130I CCWWGG 3 cut(s) 272, 826, 1103
Eco24I GRGCYC 2 cut(s) 519, 1060
Eco47I GGWCC 2 cut(s) 794, 1292
Eco57I CTGAAG 2 cut(s) 954, 1023
Eco72I CACGTG 1 cut(s) 254
Eco88I CYCGRG 3 cut(s) 549, 674, 1380
EcoO109I RGGNCCY 1 cut(s) 1305
EcoRII CCWGG 3 cut(s) 340, 403, 1204
EcoT14I CCWWGG 3 cut(s) 272, 826, 1103
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 2 cut(s) 519, 1060
ErhI CCWWGG 3 cut(s) 272, 826, 1103
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 5 cut(s) 857, 993, 1132, 1268, 1305
FauI CCCGC 1 cut(s) 1123
FbaI TGATCA 1 cut(s) 1032
Fnu4HI GCNGC 5 cut(s) 258, 546, 627, 759, 1083
FokI GGATG 6 cut(s) 19, 108, 157, 739, 1056, 1065
FriOI GRGCYC 2 cut(s) 519, 1060
Fsp4HI GCNGC 5 cut(s) 258, 546, 627, 759, 1083
FspBI CTAG 1 cut(s) 273
GluI GCNGC 5 cut(s) 258, 546, 627, 759, 1083
HaeIII GGCC 7 cut(s) 345, 517, 682, 925, 1076, 1102, 1306
HapII CCGG 4 cut(s) 550, 998, 1241, 1295
HincII GTYRAC 2 cut(s) 556, 745
HindII GTYRAC 2 cut(s) 556, 745
HinfI GANTC 2 cut(s) 1088, 1256
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 4 cut(s) 550, 998, 1241, 1295
HphI GGTGA 2 cut(s) 122, 170
Hpy166II GTNNAC 4 cut(s) 130, 556, 745, 911
Hpy188I TCNGA 2 cut(s) 291, 898
Hpy8I GTNNAC 4 cut(s) 130, 556, 745, 911
HpyAV CCTTC 3 cut(s) 364, 605, 1010
HpyCH4IV ACGT 3 cut(s) 68, 253, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 1082
HpySE526I ACGT 3 cut(s) 68, 253, 330
Ksp22I TGATCA 1 cut(s) 1032
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
LmnI GCTCC 4 cut(s) 54, 84, 542, 1063
Lsp1109I GCAGC 5 cut(s) 244, 557, 638, 745, 1094
LweI GCATC 4 cut(s) 135, 624, 717, 1034
MaeI CTAG 1 cut(s) 273
MaeII ACGT 3 cut(s) 68, 253, 330
MaeIII GTNAC 1 cut(s) 949
MalI GATC 9 cut(s) 169, 188, 247, 363, 654, 692, 1034, 1094, 1230
MbiI CCGCTC 1 cut(s) 703
MboI GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
MboII GAAGA 8 cut(s) 212, 221, 328, 573, 847, 947, 978, 1386
MflI RGATCY 2 cut(s) 186, 361
MhlI GDGCHC 3 cut(s) 519, 1060, 1178
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 8 cut(s) 161, 225, 299, 313, 321, 476, 662, 1318
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 2 cut(s) 1097, 1250
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 732
MscI TGGCCA 1 cut(s) 345
MseI TTAA 3 cut(s) 665, 744, 1250
MslI CAYNNNNRTG 5 cut(s) 45, 135, 453, 735, 1181
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 1249
MspI CCGG 4 cut(s) 550, 998, 1241, 1295
MspR9I CCNGG 7 cut(s) 342, 405, 550, 551, 998, 1206, 1241
MvaI CCWGG 3 cut(s) 342, 405, 1206
MwoI GCNNNNNNNGC 1 cut(s) 1082
NciI CCSGG 4 cut(s) 550, 551, 998, 1241
NcoI CCATGG 2 cut(s) 826, 1103
NdeII GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
NlaIV GGNNCC 8 cut(s) 517, 1059, 1101, 1188, 1238, 1293, 1307, 1328
NmuCI GTSAC 1 cut(s) 949
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 356
NspV TTCGAA 1 cut(s) 1397
OliI CACNNNNGTG 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 674
PagI TCATGA 1 cut(s) 960
PasI CCCWGGG 1 cut(s) 404
PkrI GCNGC 5 cut(s) 259, 547, 628, 760, 1084
PleI GAGTC 2 cut(s) 1096, 1250
PmaCI CACGTG 1 cut(s) 254
PmlI CACGTG 1 cut(s) 254
PpsI GAGTC 2 cut(s) 1096, 1250
Ppu21I YACGTR 2 cut(s) 254, 331
Psp6I CCWGG 3 cut(s) 340, 403, 1204
PspCI CACGTG 1 cut(s) 254
PspGI CCWGG 3 cut(s) 340, 403, 1204
PspN4I GGNNCC 8 cut(s) 517, 1059, 1101, 1188, 1238, 1293, 1307, 1328
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 8 cut(s) 515, 516, 794, 923, 1075, 1100, 1292, 1305
PsuI RGATCY 2 cut(s) 186, 361
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 5 cut(s) 45, 135, 453, 735, 1181
SaqAI TTAA 3 cut(s) 665, 744, 1250
SatI GCNGC 5 cut(s) 258, 546, 627, 759, 1083
Sau3AI GATC 9 cut(s) 167, 186, 245, 361, 652, 690, 1032, 1092, 1228
Sau96I GGNCC 8 cut(s) 515, 516, 794, 923, 1075, 1100, 1292, 1305
SchI GAGTC 2 cut(s) 1097, 1250
ScrFI CCNGG 7 cut(s) 342, 405, 550, 551, 998, 1206, 1241
SduI GDGCHC 3 cut(s) 519, 1060, 1178
SfaNI GCATC 4 cut(s) 135, 624, 717, 1034
SfcI CTRYAG 1 cut(s) 811
Sfr274I CTCGAG 1 cut(s) 674
SfuI TTCGAA 1 cut(s) 1397
SinI GGWCC 2 cut(s) 794, 1292
SlaI CTCGAG 1 cut(s) 674
SmaI CCCGGG 1 cut(s) 551
SmiMI CAYNNNNRTG 5 cut(s) 45, 135, 453, 735, 1181
SmlI CTYRAG 3 cut(s) 674, 1249, 1258
SmoI CTYRAG 3 cut(s) 674, 1249, 1258
Sse9I AATT 8 cut(s) 161, 225, 299, 313, 321, 476, 662, 1318
SsiI CCGC 2 cut(s) 703, 1130
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 7 cut(s) 340, 403, 548, 549, 996, 1204, 1239
StyI CCWWGG 3 cut(s) 272, 826, 1103
TaiI ACGT 3 cut(s) 71, 256, 333
TaqI TCGA 5 cut(s) 166, 675, 1091, 1231, 1397
TasI AATT 8 cut(s) 161, 225, 299, 313, 321, 476, 662, 1318
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 3 cut(s) 665, 744, 1250
Tru9I TTAA 3 cut(s) 665, 744, 1250
TscAI CASTG 3 cut(s) 933, 1054, 1077
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 5 cut(s) 257, 545, 626, 758, 1082
Tsp45I GTSAC 1 cut(s) 949
TspMI CCCGGG 1 cut(s) 549
TspRI CASTG 3 cut(s) 933, 1054, 1077
Vha464I CTTAAG 1 cut(s) 1249
VpaK11BI GGWCC 2 cut(s) 794, 1292
XapI RAATTY 3 cut(s) 225, 299, 313
XceI RCATGY 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 674
XmaI CCCGGG 1 cut(s) 549
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.