RchiOBHm_Chr2g0108051

Belongs to the glycosyl hydrolase 43 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004682
Physical Location & Seq
Reverse (-)
19592579 .. 19597445
4867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48203

Sequence Viewer

Length: 1377 bp
ATGCTTAAAAGGTTTTCAGGGAGCAGATGTTCAATATCTGCTGTGGTGTGGAGCTTAGTAGGATGTCTTCTTATGTTTCATTTCTACTCCCTAGTTCACCGGAAGGATGGGATGGGCAGAGAAATTCAATTTGGAGCAAGTCACCACCCACAGTTACGTGAACTGGAAAAGGTTGAAGAGGAAAGTATCCACATTCCTCCACCAAGAAAGCGATCCCCACGTGCTGCAAAAAGAAAACCTAAGCGACCCACCACAATAATCGATGAATTTCTTGATGAGAATTCTCAAATTCGGCATGTCTTCTTTCCTGATCAGAAACTTGCTGTAGATCCGATGAAGGATGCGGGGAATGATAGCTATTACTATTACCCTGGAAGGATTTGGTTGGATACTGAAGGAAATCCTATTCAAGCCCATGGAGGTGGTATTCTATATGATGAAAAATCAGGAACATACTATTGGTATGGGGAGTATAAAGATGGGCCTACATACCATGCTCACAAAAAAGGAGCAGCCCGGGTTGACATCTTAGGAGTCGGTTGCTATTCTTCCAAGGACTTATGGAAATGGAACAATGAAGGTATTGTACTAGCAGCAGAAAAAACAAACGAAACACATGATCTCCACGAGTTGAATGTTCTTGAGAGGCCAAAAGTGATTTACAATCACAAGACAGCGAAGTATGTAATGTGGATGCATATTGATGATGTCAACTACACCAAAGCTTCTGTTGGCATTGCCATCAGTGATTACCCAACTGGTCCTTTTGATTATCTCTATAGCAAACGGCCCCATGGATTTGAAAGTAGGGACATGACAATCTTCAAAGATGATGACGGTATTGCATATCTAATATACTCCTCTGAGGACAATAGTGAACTTCACATTGGACCTCTAACTGAAGATTATCTTGATGTGACCAACATCATGAGAAGAATTCTTGTGGGACAGCATCGAGAAGCCCCAGCTTTGTTCAAGCATGAGGGAACTTATTACATGATCACTTCAGGCTGCACGGGATGGGCACCAAATGAAGCACTGGCACATGCAGCAGAGTCAATCATGGGGCCATGGGAGACTATGGGAAACCCCTGCATAGGAGGGAACAAAATGGCTCGACTTACAACATTTTTTGCGCAGAGCACATTTGTGATACCTTTACCAGGATTTCCTGGTTCATTTATTCTCATGGCAGACAGATGGAACCCCGCAGACTTGAGAGACTCAAGATATGTATGGTTGCCCTTGATAGTAGGGGGGCCAGTTGATCGGCCCCTTGATTACAATTTTGGGTTCCCCTTGTGGTCAAGAGTGTCCATATATTGGCATAGGAAGTGGAAACTTCCTCAGGGGTGGAGTGGGTGGAAAAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_43

Protein Analysis

458

Amino Acids

52.57

Weight (kDa)

7.32

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_43 PF04616 177 - 361 9.9e-17 Glycosyl hydrolases family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1137
AccB1I GGYRCC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 1323
AciI CCGC 2 cut(s) 344, 1209
AclWI GGATC 2 cut(s) 207, 323
AcsI RAATTY 5 cut(s) 123, 266, 280, 288, 936
AcuI CTGAAG 3 cut(s) 414, 921, 990
AcvI CACGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 588
AfiI CCNNNNNNNGG 3 cut(s) 1097, 1163, 1323
AgsI TTSAA 8 cut(s) 33, 128, 176, 410, 634, 803, 826, 976
AjnI CCWGG 3 cut(s) 370, 1162, 1171
AjuI GAANNNNNNNTTGG 6 cut(s) 114, 146, 442, 474, 870, 902
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
AluBI AGCT 4 cut(s) 54, 357, 725, 968
AluI AGCT 4 cut(s) 54, 357, 725, 968
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 2 cut(s) 1070, 1215
AlwI GGATC 2 cut(s) 207, 323
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 6 cut(s) 482, 647, 788, 1067, 1259, 1271
ApeKI GCWGC 5 cut(s) 224, 512, 593, 1011, 1049
ApoI RAATTY 5 cut(s) 123, 266, 280, 288, 936
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 7 cut(s) 482, 761, 789, 890, 1067, 1259, 1272
AsuC2I CCSGG 2 cut(s) 517, 518
AsuHPI GGTGA 2 cut(s) 89, 134
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 2 cut(s) 761, 890
AxyI CCTNAGG 1 cut(s) 1347
BaeGI GKGCMC 1 cut(s) 1027
BanI GGYRCC 1 cut(s) 1024
BarI GAAGNNNNNNTAC 4 cut(s) 51, 83, 570, 602
BauI CACGAG 1 cut(s) 626
BbrPI CACGTG 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 59, 292
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 5 cut(s) 211, 524, 605, 998, 1061
BccI CCATC 6 cut(s) 101, 106, 473, 749, 1014, 1194
BceAI ACGGC 1 cut(s) 803
BciT130I CCWGG 3 cut(s) 372, 1164, 1173
BciVI GTATCC 2 cut(s) 197, 382
BclI TGATCA 2 cut(s) 310, 999
BcnI CCSGG 2 cut(s) 517, 518
BcoDI GTCTC 2 cut(s) 1070, 1215
BfaI CTAG 2 cut(s) 92, 590
BfmI CTRYAG 2 cut(s) 324, 778
BfuI GTATCC 2 cut(s) 197, 382
BisI GCNGC 5 cut(s) 225, 513, 594, 1012, 1050
BlsI GCNGC 5 cut(s) 226, 514, 595, 1013, 1051
Bme1390I CCNGG 5 cut(s) 372, 517, 518, 1164, 1173
Bme18I GGWCC 2 cut(s) 761, 890
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 7 cut(s) 482, 761, 789, 890, 1067, 1259, 1272
BmiI GGNNCC 7 cut(s) 791, 1026, 1068, 1205, 1260, 1274, 1295
BmrFI CCNGG 5 cut(s) 372, 517, 518, 1164, 1173
BmsI GCATC 3 cut(s) 331, 684, 961
BpiI GAAGAC 2 cut(s) 59, 292
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 3 cut(s) 662, 1210, 1237
BpuMI CCSGG 2 cut(s) 517, 518
Bsa29I ATCGAT 1 cut(s) 261
BsaAI YACGTR 2 cut(s) 158, 221
BsaJI CCNNGG 6 cut(s) 370, 415, 516, 552, 793, 1070
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 606, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 1097, 1163, 1323
Bse1I ACTGG 4 cut(s) 168, 763, 1044, 1262
Bse21I CCTNAGG 1 cut(s) 1347
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 3 cut(s) 372, 1164, 1173
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 6 cut(s) 370, 415, 516, 552, 793, 1070
BseGI GGATG 6 cut(s) 68, 112, 117, 346, 699, 1025
BseLI CCNNNNNNNGG 3 cut(s) 1097, 1163, 1323
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 2 cut(s) 855, 1361
BseNI ACTGG 4 cut(s) 168, 763, 1044, 1262
BseRI GAGGAG 1 cut(s) 850
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 5 cut(s) 211, 524, 605, 998, 1061
BseYI CCCAGC 1 cut(s) 964
BsgI GTGCAG 1 cut(s) 997
BshFI GGCC 6 cut(s) 484, 649, 790, 1069, 1261, 1273
BshNI GGYRCC 1 cut(s) 1024
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 1145
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 2 cut(s) 100, 517
BslFI GGGAC 2 cut(s) 824, 960
BslI CCNNNNNNNGG 3 cut(s) 1097, 1163, 1323
BsmAI GTCTC 2 cut(s) 1070, 1215
BsmFI GGGAC 2 cut(s) 824, 960
BsnI GGCC 6 cut(s) 484, 649, 790, 1069, 1261, 1273
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 1027, 1145
Bsp143I GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
Bsp19I CCATGG 3 cut(s) 415, 793, 1070
BspACI CCGC 2 cut(s) 344, 1209
BspANI GGCC 6 cut(s) 484, 649, 790, 1069, 1261, 1273
BspCNI CTCAG 2 cut(s) 856, 1360
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 7 cut(s) 791, 1026, 1068, 1205, 1260, 1274, 1295
BspPI GGATC 2 cut(s) 207, 323
BspT107I GGYRCC 1 cut(s) 1024
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 4 cut(s) 168, 763, 1044, 1262
BssECI CCNNGG 6 cut(s) 370, 415, 516, 552, 793, 1070
BssMI GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 4 cut(s) 415, 552, 793, 1070
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 3 cut(s) 372, 1164, 1173
Bst4CI ACNGT 2 cut(s) 153, 839
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 2 cut(s) 158, 221
BstDEI CTNAG 5 cut(s) 55, 240, 529, 864, 1347
BstDSI CCRYGG 3 cut(s) 415, 793, 1070
BstENI CCTNNNNNAGG 1 cut(s) 1161
BstF5I GGATG 6 cut(s) 68, 112, 117, 346, 699, 1025
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 6 cut(s) 215, 313, 331, 622, 1002, 1270
BstMAI GTCTC 2 cut(s) 1070, 1215
BstMBI GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
BstMWI GCNNNNNNNGC 1 cut(s) 1049
BstNI CCWGG 3 cut(s) 372, 1164, 1173
BstNSI RCATGY 2 cut(s) 299, 1049
BstSCI CCNGG 5 cut(s) 370, 515, 516, 1162, 1171
BstSFI CTRYAG 2 cut(s) 324, 778
BstSLI GKGCMC 1 cut(s) 1027
BstV1I GCAGC 5 cut(s) 211, 524, 605, 998, 1061
BstV2I GAAGAC 2 cut(s) 59, 292
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 1347
BsuI GTATCC 2 cut(s) 197, 382
BsuRI GGCC 6 cut(s) 484, 649, 790, 1069, 1261, 1273
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 3 cut(s) 415, 793, 1070
BtsCI GGATG 6 cut(s) 68, 112, 117, 346, 699, 1025
BtsIMutI CAGTG 2 cut(s) 751, 1037
CciI TCATGA 1 cut(s) 927
CfoI GCGC 1 cut(s) 1138
Cfr13I GGNCC 7 cut(s) 482, 761, 789, 890, 1067, 1259, 1272
Cfr9I CCCGGG 1 cut(s) 516
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 1 cut(s) 587
CviQI GTAC 1 cut(s) 587
DdeI CTNAG 5 cut(s) 55, 240, 529, 864, 1347
DpnI GATC 6 cut(s) 214, 312, 330, 621, 1001, 1269
DpnII GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 4 cut(s) 415, 552, 793, 1070
Eco47I GGWCC 2 cut(s) 761, 890
Eco57I CTGAAG 3 cut(s) 414, 921, 990
Eco72I CACGTG 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 1347
Eco88I CYCGRG 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 1161
EcoRI GAATTC 2 cut(s) 280, 936
EcoRII CCWGG 3 cut(s) 370, 1162, 1171
EcoT14I CCWWGG 4 cut(s) 415, 552, 793, 1070
EcoT22I ATGCAT 1 cut(s) 699
ErhI CCWWGG 4 cut(s) 415, 552, 793, 1070
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FaqI GGGAC 2 cut(s) 824, 960
FauI CCCGC 2 cut(s) 337, 1216
FbaI TGATCA 2 cut(s) 310, 999
Fnu4HI GCNGC 5 cut(s) 225, 513, 594, 1012, 1050
FokI GGATG 6 cut(s) 75, 119, 124, 353, 706, 1032
Fsp4HI GCNGC 5 cut(s) 225, 513, 594, 1012, 1050
FspBI CTAG 2 cut(s) 92, 590
FspI TGCGCA 1 cut(s) 1137
GlaI GCGC 1 cut(s) 1137
GluI GCNGC 5 cut(s) 225, 513, 594, 1012, 1050
GsaI CCCAGC 1 cut(s) 968
HaeIII GGCC 6 cut(s) 484, 649, 790, 1069, 1261, 1273
HapII CCGG 2 cut(s) 100, 517
HhaI GCGC 1 cut(s) 1138
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HincII GTYRAC 2 cut(s) 523, 712
HindII GTYRAC 2 cut(s) 523, 712
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 3 cut(s) 534, 1055, 1223
HpaII CCGG 2 cut(s) 100, 517
HphI GGTGA 2 cut(s) 89, 134
Hpy166II GTNNAC 5 cut(s) 97, 161, 523, 712, 878
Hpy188I TCNGA 3 cut(s) 315, 333, 865
Hpy188III TCNNGA 9 cut(s) 272, 308, 447, 641, 911, 928, 956, 1227, 1308
Hpy8I GTNNAC 5 cut(s) 97, 161, 523, 712, 878
HpyAV CCTTC 5 cut(s) 97, 331, 369, 389, 572
HpyCH4III ACNGT 2 cut(s) 153, 839
HpyCH4IV ACGT 2 cut(s) 157, 220
HpyCH4V TGCA 6 cut(s) 227, 697, 845, 1014, 1049, 1095
HpyF10VI GCNNNNNNNGC 1 cut(s) 1049
HpyF3I CTNAG 5 cut(s) 55, 240, 529, 864, 1347
HpySE526I ACGT 2 cut(s) 157, 220
HspAI GCGC 1 cut(s) 1136
Ksp22I TGATCA 2 cut(s) 310, 999
Kzo9I GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
LmnI GCTCC 4 cut(s) 21, 51, 134, 509
Lsp1109I GCAGC 5 cut(s) 211, 524, 605, 998, 1061
LweI GCATC 3 cut(s) 331, 684, 961
MaeI CTAG 2 cut(s) 92, 590
MaeII ACGT 2 cut(s) 157, 220
MaeIII GTNAC 3 cut(s) 140, 153, 916
MalI GATC 6 cut(s) 214, 312, 330, 621, 1001, 1269
MboI GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
MboII GAAGA 7 cut(s) 59, 188, 292, 540, 814, 914, 945
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 1027, 1145
MluCI AATT 7 cut(s) 123, 128, 266, 280, 288, 936, 1285
MlyI GAGTC 3 cut(s) 543, 1064, 1217
MmeI TCCRAC 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 699
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 3 cut(s) 420, 702, 1148
MspI CCGG 2 cut(s) 100, 517
MspR9I CCNGG 5 cut(s) 372, 517, 518, 1164, 1173
MvaI CCWGG 3 cut(s) 372, 1164, 1173
MwoI GCNNNNNNNGC 1 cut(s) 1049
NciI CCSGG 2 cut(s) 517, 518
NcoI CCATGG 3 cut(s) 415, 793, 1070
NdeII GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
NlaIV GGNNCC 7 cut(s) 791, 1026, 1068, 1205, 1260, 1274, 1295
NmuCI GTSAC 2 cut(s) 140, 916
NsbI TGCGCA 1 cut(s) 1137
NsiI ATGCAT 1 cut(s) 699
NspI RCATGY 2 cut(s) 299, 1049
OliI CACNNNNGTG 1 cut(s) 1148
PagI TCATGA 1 cut(s) 927
PflMI CCANNNNNTGG 1 cut(s) 1323
PkrI GCNGC 5 cut(s) 226, 514, 595, 1013, 1051
PleI GAGTC 3 cut(s) 542, 1063, 1217
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
PpsI GAGTC 3 cut(s) 542, 1063, 1217
Ppu21I YACGTR 2 cut(s) 158, 221
Psp6I CCWGG 3 cut(s) 370, 1162, 1171
PspCI CACGTG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 3 cut(s) 370, 1162, 1171
PspN4I GGNNCC 7 cut(s) 791, 1026, 1068, 1205, 1260, 1274, 1295
PspPI GGNCC 7 cut(s) 482, 761, 789, 890, 1067, 1259, 1272
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 588
RsaNI GTAC 1 cut(s) 587
RseI CAYNNNNRTG 3 cut(s) 420, 702, 1148
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 5 cut(s) 225, 513, 594, 1012, 1050
Sau3AI GATC 6 cut(s) 212, 310, 328, 619, 999, 1267
Sau96I GGNCC 7 cut(s) 482, 761, 789, 890, 1067, 1259, 1272
SchI GAGTC 3 cut(s) 543, 1064, 1217
ScrFI CCNGG 5 cut(s) 372, 517, 518, 1164, 1173
SduI GDGCHC 2 cut(s) 1027, 1145
SfaNI GCATC 3 cut(s) 331, 684, 961
SfcI CTRYAG 2 cut(s) 324, 778
SinI GGWCC 2 cut(s) 761, 890
SmaI CCCGGG 1 cut(s) 518
SmiMI CAYNNNNRTG 3 cut(s) 420, 702, 1148
SmlI CTYRAG 3 cut(s) 641, 1216, 1225
SmoI CTYRAG 3 cut(s) 641, 1216, 1225
Sse9I AATT 7 cut(s) 123, 128, 266, 280, 288, 936, 1285
SsiI CCGC 2 cut(s) 344, 1209
SspMI CTAG 2 cut(s) 92, 590
StyD4I CCNGG 5 cut(s) 370, 515, 516, 1162, 1171
StyI CCWWGG 4 cut(s) 415, 552, 793, 1070
TaaI ACNGT 2 cut(s) 153, 839
TaiI ACGT 2 cut(s) 160, 223
TaqI TCGA 3 cut(s) 261, 955, 1117
TasI AATT 7 cut(s) 123, 128, 266, 280, 288, 936, 1285
TatI WGTACW 1 cut(s) 586
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 2 cut(s) 751, 1044
TseFI GTSAC 2 cut(s) 140, 916
TseI GCWGC 5 cut(s) 224, 512, 593, 1011, 1049
Tsp45I GTSAC 2 cut(s) 140, 916
TspDTI ATGAA 7 cut(s) 68, 279, 350, 453, 591, 1047, 1167
TspMI CCCGGG 1 cut(s) 516
TspRI CASTG 2 cut(s) 751, 1044
Van91I CCANNNNNTGG 1 cut(s) 1323
VpaK11BI GGWCC 2 cut(s) 761, 890
XagI CCTNNNNNAGG 1 cut(s) 1161
XapI RAATTY 5 cut(s) 123, 266, 280, 288, 936
XceI RCATGY 2 cut(s) 299, 1049
XmaI CCCGGG 1 cut(s) 516
XspI CTAG 2 cut(s) 92, 590
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.