AT3G49960

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008952
Physical Location & Seq
Reverse (-)
18524084 .. 18525792
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49960.1

Sequence Viewer

Length: 990 bp
ATGGCTCGCTTCGATATTGTTCTACTCATAGGTCTTTGCCTCATAATCTCTGTCTTTCCCGATACAACCACCGCACAACTAAGCCGCGGTTTCTACTCCAAAACTTGCCCCAATGTCGAACAAATCGTGAGAAATGCTGTCCAAAAGAAAATAAAGAAGACATTCGTCGCCGTCCCTGCCACTCTCCGTCTCTTCTTCCACGACTGCTTTGTCAATGGTTGTGATGCATCTGTCATGATCCAATCAACGCCTAAGAACAAGGCAGAGAAGGATCATCCAGATAACATTTCGCTAGCTGGAGATGGATTTGATGTGGTGATCCAAGCTAAGAAAGCCCTTGACTCTAACCCTAGTTGCCGGAACAAGGTCTCATGTGCCGATATTCTTACTTTGGCCACCCGAGATGTTGTTGTTGCGGCTGGAGGACCGTCCTATGAAGTTGAACTTGGTAGGTTCGATGGTTTGGTATCAACCGCGTCAAGTGTCGAAGGGAACTTACCAGGACCTTCGGACAATGTAGACAAACTTAATGCTCTTTTCACGAAAAACAAACTTACCCAAGAAGATATGATTGCTCTTTCAGCGGCTCACACCCTTGGATTCGCACATTGTGGCAAGGTCTTTAAAAGAATCCACAAATTCAACGGCATCAACTCCGTGGACCCAACTTTAAACAAGGCTTACGCTATTGAGCTTCAAAAGGCTTGTCCTAAGAATGTGGACCCAAGAATTGCAATCAACATGGACCCAGTCACGCCCAAGACGTTTGACAACACTTACTTCAAGAATCTTCAACAAGGCAAAGGTCTCTTCACCTCCGATCAAGTTCTCTTCACGGATGGTCGCTCTAGGCCCACCGTTAATGCTTGGGCCTCAAACTCTACGGCCTTTAACCGCGCTTTTGTGATAGCCATGACCAAACTTGGCCGTGTTGGAGTTAAGAATAGCAGCAATGGAAACATCCGTCGTGATTGTGGTGCGTTTAACTAG

Protein Analysis

329

Amino Acids

35.76

Weight (kDa)

9.24

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 293 5.5e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 519
AccII CGCG 3 cut(s) 87, 476, 897
AciI CCGC 7 cut(s) 72, 85, 87, 416, 474, 584, 895
AclWI GGATC 3 cut(s) 232, 279, 313
AcoI YGGCCR 2 cut(s) 393, 925
AcsI RAATTY 1 cut(s) 638
AdeI CACNNNGTG 1 cut(s) 611
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 5 cut(s) 443, 643, 698, 784, 794
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 3 cut(s) 296, 326, 694
AluI AGCT 3 cut(s) 296, 326, 694
Alw26I GTCTC 3 cut(s) 194, 373, 812
AlwI GGATC 3 cut(s) 232, 279, 313
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 5 cut(s) 393, 851, 870, 885, 925
ApeKI GCWGC 1 cut(s) 948
ApoI RAATTY 1 cut(s) 638
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 899
AspS9I GGNCC 7 cut(s) 425, 503, 661, 721, 745, 852, 870
AsuHPI GGTGA 2 cut(s) 328, 805
AsuNHI GCTAGC 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 5 cut(s) 425, 503, 661, 721, 745
BalI TGGCCA 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 960
BccI CCATC 3 cut(s) 296, 452, 833
BceAI ACGGC 4 cut(s) 155, 661, 900, 912
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 194, 373, 812
BfaI CTAG 4 cut(s) 293, 351, 849, 988
BisI GCNGC 4 cut(s) 85, 417, 585, 949
BlsI GCNGC 4 cut(s) 86, 418, 586, 950
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 5 cut(s) 425, 503, 661, 721, 745
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 7 cut(s) 425, 503, 661, 721, 745, 852, 870
BmiI GGNNCC 3 cut(s) 663, 723, 747
BmrFI CCNGG 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 3 cut(s) 214, 236, 657
BmtI GCTAGC 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 743
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 2 cut(s) 318, 441
BsaI GGTCTC 2 cut(s) 373, 812
BsaJI CCNNGG 3 cut(s) 85, 595, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 749
Bse3DI GCAATG 1 cut(s) 958
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 3 cut(s) 85, 595, 657
BseGI GGATG 3 cut(s) 274, 844, 960
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 958
BseNI ACTGG 1 cut(s) 749
BseXI GCAGC 1 cut(s) 960
Bsh1236I CGCG 3 cut(s) 87, 476, 897
BshFI GGCC 5 cut(s) 395, 853, 872, 887, 927
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 3 cut(s) 194, 373, 812
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 5 cut(s) 395, 853, 872, 887, 927
Bso31I GGTCTC 2 cut(s) 373, 812
BsoBI CYCGRG 1 cut(s) 399
Bsp143I GATC 4 cut(s) 237, 271, 318, 820
BspACI CCGC 7 cut(s) 72, 85, 87, 416, 474, 584, 895
BspANI GGCC 5 cut(s) 395, 853, 872, 887, 927
BspFNI CGCG 3 cut(s) 87, 476, 897
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 663, 723, 747
BspOI GCTAGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 232, 279, 313
BspTNI GGTCTC 2 cut(s) 373, 812
BsrDI GCAATG 1 cut(s) 958
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 85, 595, 657
BssMI GATC 4 cut(s) 237, 271, 318, 820
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 429, 859
Bst6I CTCTTC 3 cut(s) 197, 815, 836
BstC8I GCNNGC 2 cut(s) 7, 294
BstDEI CTNAG 4 cut(s) 80, 252, 327, 711
BstDSI CCRYGG 2 cut(s) 85, 657
BstF5I GGATG 3 cut(s) 274, 844, 960
BstFNI CGCG 3 cut(s) 87, 476, 897
BstHHI GCGC 1 cut(s) 899
BstKTI GATC 4 cut(s) 240, 274, 321, 823
BstMAI GTCTC 3 cut(s) 194, 373, 812
BstMBI GATC 4 cut(s) 237, 271, 318, 820
BstMWI GCNNNNNNNGC 3 cut(s) 176, 332, 581
BstNI CCWGG 1 cut(s) 501
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 499
BstUI CGCG 3 cut(s) 87, 476, 897
BstV1I GCAGC 1 cut(s) 960
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 5 cut(s) 395, 853, 872, 887, 927
BtgI CCRYGG 2 cut(s) 85, 657
BtsCI GGATG 3 cut(s) 274, 844, 960
Cac8I GCNNGC 2 cut(s) 7, 294
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 899
Cfr13I GGNCC 7 cut(s) 425, 503, 661, 721, 745, 852, 870
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 1 cut(s) 465
CviAII CATG 4 cut(s) 235, 372, 742, 913
DdeI CTNAG 4 cut(s) 80, 252, 327, 711
DpnI GATC 4 cut(s) 239, 273, 320, 822
DpnII GATC 4 cut(s) 237, 271, 318, 820
DraI TTTAAA 2 cut(s) 625, 672
DraIII CACNNNGTG 1 cut(s) 611
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 2 cut(s) 393, 925
Eam1104I CTCTTC 3 cut(s) 197, 815, 836
EarI CTCTTC 3 cut(s) 197, 815, 836
Eco130I CCWWGG 1 cut(s) 595
Eco31I GGTCTC 2 cut(s) 373, 812
Eco47I GGWCC 5 cut(s) 425, 503, 661, 721, 745
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 4 cut(s) 238, 375, 745, 916
FaiI YATR 8 cut(s) 29, 44, 236, 373, 435, 569, 743, 914
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 234, 371, 741, 912
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 4 cut(s) 85, 417, 585, 949
FokI GGATG 3 cut(s) 261, 851, 947
Fsp4HI GCNGC 4 cut(s) 85, 417, 585, 949
FspBI CTAG 4 cut(s) 293, 351, 849, 988
GlaI GCGC 1 cut(s) 898
GluI GCNGC 4 cut(s) 85, 417, 585, 949
GsuI CTGGAG 2 cut(s) 318, 441
HaeIII GGCC 5 cut(s) 395, 853, 872, 887, 927
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 465
HhaI GCGC 1 cut(s) 899
Hin1II CATG 4 cut(s) 238, 375, 745, 916
Hin6I GCGC 1 cut(s) 897
HinP1I GCGC 1 cut(s) 897
HinfI GANTC 4 cut(s) 341, 600, 630, 787
HpaII CCGG 1 cut(s) 358
HphI GGTGA 2 cut(s) 328, 805
Hpy166II GTNNAC 3 cut(s) 520, 661, 721
Hpy188I TCNGA 2 cut(s) 511, 820
Hpy188III TCNNGA 7 cut(s) 59, 127, 235, 278, 541, 784, 968
Hpy8I GTNNAC 3 cut(s) 520, 661, 721
Hpy99I CGWCG 2 cut(s) 170, 969
HpyAV CCTTC 3 cut(s) 262, 482, 516
HpyCH4III ACNGT 2 cut(s) 429, 859
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 2 cut(s) 227, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 332, 581
HpyF3I CTNAG 4 cut(s) 80, 252, 327, 711
HpySE526I ACGT 1 cut(s) 764
Hsp92II CATG 4 cut(s) 238, 375, 745, 916
HspAI GCGC 1 cut(s) 897
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 4 cut(s) 237, 271, 318, 820
LpnPI CCDG 8 cut(s) 189, 282, 291, 371, 405, 486, 513, 762
Lsp1109I GCAGC 1 cut(s) 960
LweI GCATC 3 cut(s) 214, 236, 657
MaeI CTAG 4 cut(s) 293, 351, 849, 988
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 1 cut(s) 751
MalI GATC 4 cut(s) 239, 273, 320, 822
MboI GATC 4 cut(s) 237, 271, 318, 820
MboII GAAGA 7 cut(s) 169, 184, 187, 575, 782, 802, 823
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 638, 729
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 913
MnlI CCTC 4 cut(s) 50, 416, 826, 883
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 395
MseI TTAA 7 cut(s) 528, 624, 671, 861, 891, 939, 984
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 87, 584
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 3 cut(s) 87, 476, 897
MwoI GCNNNNNNNGC 3 cut(s) 176, 332, 581
NdeII GATC 4 cut(s) 237, 271, 318, 820
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 4 cut(s) 238, 375, 745, 916
NlaIV GGNNCC 3 cut(s) 663, 723, 747
NmuCI GTSAC 1 cut(s) 751
NsiI ATGCAT 1 cut(s) 229
PagI TCATGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 761
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 600, 630, 787
PflFI GACNNNGTC 1 cut(s) 749
PkrI GCNGC 4 cut(s) 86, 418, 586, 950
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 503
PshAI GACNNNNGTC 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 663, 723, 747
PspPI GGNCC 7 cut(s) 425, 503, 661, 721, 745, 852, 870
PspPPI RGGWCCY 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 749
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 7 cut(s) 528, 624, 671, 861, 891, 939, 984
SatI GCNGC 4 cut(s) 85, 417, 585, 949
Sau3AI GATC 4 cut(s) 237, 271, 318, 820
Sau96I GGNCC 7 cut(s) 425, 503, 661, 721, 745, 852, 870
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 501
SfaNI GCATC 3 cut(s) 214, 236, 657
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 5 cut(s) 425, 503, 661, 721, 745
Sse9I AATT 2 cut(s) 638, 729
SsiI CCGC 7 cut(s) 72, 85, 87, 416, 474, 584, 895
SspMI CTAG 4 cut(s) 293, 351, 849, 988
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 429, 859
TaiI ACGT 1 cut(s) 767
TaqI TCGA 4 cut(s) 12, 117, 456, 486
TasI AATT 2 cut(s) 638, 729
TauI GCSGC 3 cut(s) 87, 419, 587
TfiI GAWTC 3 cut(s) 600, 630, 787
Tru1I TTAA 7 cut(s) 528, 624, 671, 861, 891, 939, 984
Tru9I TTAA 7 cut(s) 528, 624, 671, 861, 891, 939, 984
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 1 cut(s) 948
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 4 cut(s) 176, 646, 851, 953
Tth111I GACNNNGTC 1 cut(s) 749
VpaK11BI GGWCC 5 cut(s) 425, 503, 661, 721, 745
XapI RAATTY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 4 cut(s) 293, 351, 849, 988
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.