Rroxscaffold_2G00136230

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008952
Physical Location & Seq
Reverse (-)
73912784 .. 73914839
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136230.1

Sequence Viewer

Length: 975 bp
ATGGGTCGGTTCAGTCTTGTTCTGGTTTGGTCACTTTGCCTCTCTTTGTGCATGTTCTCTAAACCCACATCTGCGCAGCTGAAAACAAACTTCTACGCCAATATCTGCCCCAATGTCGAATCCATTGTCAAAAATGCTGTCACTAAGAAGTTCCAACAAACATTTGTGACGGTTCCCGCCACTATTCGTCTCTTTTTCCACGATTGCTTTGTCCAGGGTTGTGATGCTTCAGTAATAATTTCTTCAACAGGAAGCAATAAAGCAGAGAAAGACCACCCTGAAAATCTGTCATTGGCCGGAGATGGGTTCGATACTGTGATCAAAGCAAAAGCAGCCGTTGATGCAGTTGCACAATGCAGAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCAGAGACGCTATTGTTCTGTCTGGGGGGCCTTCATATCAAGTTGAATTGGGAAGATTGGATGGACTGAGCTCAACTTCTTCAAGTGTAAATGGGAAGCTTCCCCAGCCAACCTTCAATGTGAACCAGCTCAATTCCATGTTCAGTGCACATGGGTTTACTCAGGCAGACATGGTTGCTCTTTCAGCGGCGCACACCGTCGGATTCTCTCATTGCAGCAGGTTCGGTAGTCGGATCGGAAACCCGGTGGACCCCACGCTAAACAAAACCTACGCTGCAGAGCTGCAACAACAGTGTCCGAAGAACGTTAACCCCGACATAGCCATCAACATGGACCCAAACACGCCCAGAACTTTTGACAACATGTACTACAAGAATCTTCAGCAGGGCAAAGGCTTGTTCACCTCCGATCAGGTCCTTTTCACCGACACTAGGACCCAGCCCACTGTCAATTCTTGGGCCTCAAACAATGCAGCTTTTCAACAAGCCTTTATCACTGCTATGACCAAGTTGGGCCGGGTCGGAGTCAAGACCGGCAATAATGGTAATATTCGTCGGGATTGTGCCGTTTTTAATTGA

Protein Analysis

324

Amino Acids

35.08

Weight (kDa)

8.9

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 288 2.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 606
AciI CCGC 2 cut(s) 177, 584
AclI AACGTT 1 cut(s) 702
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 213, 761
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 2 cut(s) 303, 828
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 5 cut(s) 246, 443, 480, 514, 878
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 6 cut(s) 79, 468, 496, 526, 679, 872
AluI AGCT 6 cut(s) 79, 468, 496, 526, 679, 872
Alw21I GWGCWC 2 cut(s) 470, 547
Alw26I GTCTC 3 cut(s) 194, 373, 396
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 1 cut(s) 638
AoxI GGCC 4 cut(s) 294, 425, 855, 910
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 6 cut(s) 76, 332, 612, 671, 679, 869
ArsI GACNNNNNNTTYG 4 cut(s) 111, 123, 143, 155
AspLEI GCGC 2 cut(s) 76, 589
AspS9I GGNCC 7 cut(s) 425, 646, 730, 811, 831, 855, 910
AsuC2I CCSGG 2 cut(s) 641, 914
AsuHPI GGTGA 2 cut(s) 790, 811
AvaII GGWCC 4 cut(s) 646, 730, 811, 831
BaeGI GKGCMC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 470, 547
BbvI GCAGC 6 cut(s) 88, 344, 624, 658, 666, 881
BccI CCATC 3 cut(s) 296, 452, 728
BceAI ACGGC 2 cut(s) 320, 947
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 2 cut(s) 641, 914
BcoDI GTCTC 3 cut(s) 194, 373, 396
BfaI CTAG 1 cut(s) 828
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 7 cut(s) 77, 333, 585, 613, 672, 680, 870
BlsI GCNGC 7 cut(s) 78, 334, 586, 614, 673, 681, 871
Bme1390I CCNGG 3 cut(s) 215, 641, 914
Bme18I GGWCC 4 cut(s) 646, 730, 811, 831
BmgT120I GGNCC 7 cut(s) 425, 646, 730, 811, 831, 855, 910
BmiI GGNNCC 5 cut(s) 174, 426, 648, 732, 833
BmrFI CCNGG 3 cut(s) 215, 641, 914
BmsI GCATC 2 cut(s) 214, 331
BpuMI CCSGG 2 cut(s) 641, 914
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 828
Bse118I RCCGGY 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 2 cut(s) 303, 828
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 455, 572
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 6 cut(s) 88, 344, 624, 658, 666, 881
BseYI CCCAGC 2 cut(s) 501, 834
BshFI GGCC 4 cut(s) 296, 427, 857, 912
BsiHKAI GWGCWC 2 cut(s) 470, 547
BsiSI CCGG 4 cut(s) 297, 641, 913, 930
BslI CCNNNNNNNGG 2 cut(s) 303, 828
BsmAI GTCTC 3 cut(s) 194, 373, 396
BsmBI CGTCTC 2 cut(s) 194, 396
BsnI GGCC 4 cut(s) 296, 427, 857, 912
Bsp1286I GDGCHC 2 cut(s) 470, 547
Bsp143I GATC 3 cut(s) 318, 630, 805
BspACI CCGC 2 cut(s) 177, 584
BspANI GGCC 4 cut(s) 296, 427, 857, 912
BspCNI CTCAG 2 cut(s) 456, 571
BspLI GGNNCC 5 cut(s) 174, 426, 648, 732, 833
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 929
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 318, 630, 805
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 5 cut(s) 172, 316, 595, 690, 844
BstDEI CTNAG 3 cut(s) 144, 464, 558
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 2 cut(s) 76, 589
BstKTI GATC 3 cut(s) 321, 633, 808
BstMAI GTCTC 3 cut(s) 194, 373, 396
BstMBI GATC 3 cut(s) 318, 630, 805
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 2 cut(s) 55, 763
BstSCI CCNGG 3 cut(s) 213, 639, 912
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 6 cut(s) 88, 344, 624, 658, 666, 881
BstXI CCANNNNNNTGG 1 cut(s) 727
BsuRI GGCC 4 cut(s) 296, 427, 857, 912
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 4 cut(s) 547, 695, 840, 891
BveI ACCTGC 1 cut(s) 606
CfoI GCGC 2 cut(s) 76, 589
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 7 cut(s) 425, 646, 730, 811, 831, 855, 910
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 763
CviAII CATG 6 cut(s) 52, 535, 548, 568, 727, 760
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 3 cut(s) 144, 464, 558
DpnI GATC 3 cut(s) 320, 632, 807
DpnII GATC 3 cut(s) 318, 630, 805
EaeI YGGCCR 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 4 cut(s) 646, 730, 811, 831
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 213, 761
EcoICRI GAGCTC 1 cut(s) 468
EcoO109I RGGNCCY 3 cut(s) 425, 811, 831
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 470
Esp3I CGTCTC 2 cut(s) 194, 396
FaeI CATG 6 cut(s) 55, 538, 551, 571, 730, 763
FaiI YATR 9 cut(s) 53, 433, 536, 549, 569, 716, 728, 761, 899
FatI CATG 6 cut(s) 51, 534, 547, 567, 726, 759
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 77, 333, 585, 613, 672, 680, 870
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 7 cut(s) 77, 333, 585, 613, 672, 680, 870
FspBI CTAG 1 cut(s) 828
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 2 cut(s) 75, 588
GluI GCNGC 7 cut(s) 77, 333, 585, 613, 672, 680, 870
GsaI CCCAGC 2 cut(s) 505, 838
HaeIII GGCC 4 cut(s) 296, 427, 857, 912
HapII CCGG 4 cut(s) 297, 641, 913, 930
HgaI GACGC 1 cut(s) 413
HhaI GCGC 2 cut(s) 76, 589
Hin1II CATG 6 cut(s) 55, 538, 551, 571, 730, 763
Hin6I GCGC 2 cut(s) 74, 587
HinP1I GCGC 2 cut(s) 74, 587
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 4 cut(s) 119, 600, 772, 921
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 4 cut(s) 297, 641, 913, 930
HphI GGTGA 2 cut(s) 790, 811
Hpy166II GTNNAC 6 cut(s) 520, 545, 555, 646, 706, 798
Hpy188I TCNGA 6 cut(s) 599, 630, 635, 696, 805, 920
Hpy188III TCNNGA 2 cut(s) 925, 953
Hpy8I GTNNAC 6 cut(s) 520, 545, 555, 646, 706, 798
Hpy99I CGWCG 2 cut(s) 599, 954
HpyAV CCTTC 2 cut(s) 438, 520
HpyCH4III ACNGT 5 cut(s) 172, 316, 595, 690, 844
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 9 cut(s) 51, 344, 350, 357, 545, 612, 674, 682, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
HpyF3I CTNAG 3 cut(s) 144, 464, 558
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 6 cut(s) 55, 538, 551, 571, 730, 763
HspAI GCGC 2 cut(s) 74, 587
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 3 cut(s) 318, 630, 805
Lsp1109I GCAGC 6 cut(s) 88, 344, 624, 658, 666, 881
LweI GCATC 2 cut(s) 214, 331
MaeI CTAG 1 cut(s) 828
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 30, 139, 166
MalI GATC 3 cut(s) 320, 632, 807
MboI GATC 3 cut(s) 318, 630, 805
MboII GAAGA 5 cut(s) 234, 462, 468, 709, 767
MhlI GDGCHC 2 cut(s) 470, 547
MluCI AATT 5 cut(s) 237, 443, 529, 847, 970
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 4 cut(s) 178, 577, 608, 898
MnlI CCTC 3 cut(s) 50, 811, 868
MseI TTAA 2 cut(s) 705, 969
MslI CAYNNNNRTG 2 cut(s) 725, 896
MspA1I CMGCKG 2 cut(s) 79, 584
MspI CCGG 4 cut(s) 297, 641, 913, 930
MspR9I CCNGG 3 cut(s) 215, 641, 914
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
NciI CCSGG 2 cut(s) 641, 914
NdeII GATC 3 cut(s) 318, 630, 805
NlaIII CATG 6 cut(s) 55, 538, 551, 571, 730, 763
NlaIV GGNNCC 5 cut(s) 174, 426, 648, 732, 833
NmuCI GTSAC 3 cut(s) 30, 139, 166
NsbI TGCGCA 1 cut(s) 75
NspI RCATGY 2 cut(s) 55, 763
PciI ACATGT 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PfeI GAWTC 3 cut(s) 119, 600, 772
PkrI GCNGC 7 cut(s) 78, 334, 586, 614, 673, 681, 871
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 2 cut(s) 811, 831
PscI ACATGT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 702
Psp5II RGGWCCY 2 cut(s) 811, 831
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 2 cut(s) 501, 834
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 5 cut(s) 174, 426, 648, 732, 833
PspPI GGNCC 7 cut(s) 425, 646, 730, 811, 831, 855, 910
PspPPI RGGWCCY 2 cut(s) 811, 831
PstI CTGCAG 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 2 cut(s) 725, 896
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 2 cut(s) 705, 969
SatI GCNGC 7 cut(s) 77, 333, 585, 613, 672, 680, 870
Sau3AI GATC 3 cut(s) 318, 630, 805
Sau96I GGNCC 7 cut(s) 425, 646, 730, 811, 831, 855, 910
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 3 cut(s) 215, 641, 914
SduI GDGCHC 2 cut(s) 470, 547
SfaNI GCATC 2 cut(s) 214, 331
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 4 cut(s) 646, 730, 811, 831
SmiMI CAYNNNNRTG 2 cut(s) 725, 896
Sse9I AATT 5 cut(s) 237, 443, 529, 847, 970
SsiI CCGC 2 cut(s) 177, 584
SspI AATATT 1 cut(s) 946
SspMI CTAG 1 cut(s) 828
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 213, 639, 912
TaaI ACNGT 5 cut(s) 172, 316, 595, 690, 844
TaiI ACGT 1 cut(s) 705
TaqI TCGA 2 cut(s) 117, 309
TasI AATT 5 cut(s) 237, 443, 529, 847, 970
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 3 cut(s) 119, 600, 772
Tru1I TTAA 2 cut(s) 705, 969
Tru9I TTAA 2 cut(s) 705, 969
TscAI CASTG 4 cut(s) 547, 695, 847, 898
TseFI GTSAC 3 cut(s) 30, 139, 166
TseI GCWGC 6 cut(s) 76, 332, 612, 671, 679, 869
Tsp45I GTSAC 3 cut(s) 30, 139, 166
TspDTI ATGAA 1 cut(s) 420
TspRI CASTG 4 cut(s) 547, 695, 847, 898
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 4 cut(s) 646, 730, 811, 831
XceI RCATGY 2 cut(s) 55, 763
XspI CTAG 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.