Rorug02G0144500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008952
Physical Location & Seq
Reverse (-)
12712580 .. 12713567
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0144500.1

Sequence Viewer

Length: 726 bp
ATGGGGAGTTCATCAGGCTTTGGCCTCCTCATTCTCTTGGGGGCACTTGTGGTTCCCAAGCTTTTCAATGCTCTGCTGCTCCTAAGCGACGGCGGACGTTCAAGTGTGGTGGGTTCGTTGGTGCATGAGAATCCGGGGTTCGGTGGGACGGAAAGAGTTGGAGATGATGATTGCTGGGAAGGGTCGGATCCAGGTAGGCTGGATCTGTTGTCGATTATCCATGGCGGTTTCAAGTGGTTGGATTCATCTTGGGGTGACGAGGGTGTTTCACGGCCACTGAAGGCGGAAGTGTCGGGTCCGACGGGGTTGGGTATTACCCTGCTTCTACCGCCGGGGATCGTTCCAGGGGATTTGGAACGGGTTTTGGCGAATCTGGGGTGCATGGGGCTGACCTTGTGTGGTGATGGCGGTGTCCTCTGGGACATAGAGGGTGGCGAAGTGGTGACTGGACTAGGGATCGACGACGGAAGAGATTCTGGCGGCAGTGGCGGCTACTTTGGCGTTTGTGAGGTTGCTGGTGTTGCTAGGGTTTCTCCAAGTCGGGCTGGAGATTGGGTCTTCCTGCTCTGGGCTGCAATTGTTTGTTGGGCTCCTTGCCTTGGGCTACCCGAGTTTGGGTTTCAAAGGGGTGGAGGTGGCTGTGGGCTGGCATGTGACGGTCGGACAGGTTGGGCTGTGGACCCTTTTTGGCTGGAATGGGGCTCTAGGGCCCATAGTACTATTTAA

Protein Analysis

241

Amino Acids

24.8

Weight (kDa)

4.41

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 93, 225, 284, 329, 408, 480, 489
AclWI GGATC 5 cut(s) 182, 195, 210, 344, 464
AcoI YGGCCR 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 5 cut(s) 140, 568, 599, 614, 615
AgsI TTSAA 4 cut(s) 67, 102, 232, 623
AjnI CCWGG 2 cut(s) 190, 343
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AlwI GGATC 5 cut(s) 182, 195, 210, 344, 464
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 3 cut(s) 22, 272, 708
ApaI GGGCCC 1 cut(s) 712
ApeKI GCWGC 2 cut(s) 76, 572
Asp700I GAANNNNTTC 1 cut(s) 472
AspS9I GGNCC 4 cut(s) 296, 679, 708, 709
AsuC2I CCSGG 2 cut(s) 135, 333
AsuHPI GGTGA 3 cut(s) 266, 413, 454
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 2 cut(s) 296, 679
BaeGI GKGCMC 2 cut(s) 46, 712
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 3 cut(s) 592, 704, 712
BbsI GAAGAC 1 cut(s) 550
BbvI GCAGC 2 cut(s) 63, 559
BccI CCATC 1 cut(s) 398
BceAI ACGGC 2 cut(s) 106, 287
BciT130I CCWGG 2 cut(s) 192, 345
BcnI CCSGG 2 cut(s) 135, 333
BfaI CTAG 3 cut(s) 452, 525, 705
BisI GCNGC 4 cut(s) 77, 481, 490, 573
BlsI GCNGC 4 cut(s) 78, 482, 491, 574
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 4 cut(s) 135, 192, 333, 345
Bme18I GGWCC 2 cut(s) 296, 679
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 4 cut(s) 296, 679, 708, 709
BmiI GGNNCC 6 cut(s) 54, 189, 297, 591, 681, 710
BmrFI CCNGG 4 cut(s) 135, 192, 333, 345
BpiI GAAGAC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 135, 333
BsaJI CCNNGG 5 cut(s) 134, 220, 332, 344, 598
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 568, 599, 614, 615
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 2 cut(s) 192, 345
BseDI CCNNGG 5 cut(s) 134, 220, 332, 344, 598
BseLI CCNNNNNNNGG 5 cut(s) 140, 568, 599, 614, 615
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 46, 712
BseXI GCAGC 2 cut(s) 63, 559
BseYI CCCAGC 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 3 cut(s) 24, 274, 710
BsiEI CGRYCG 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 2 cut(s) 134, 332
BslFI GGGAC 2 cut(s) 160, 434
BslI CCNNNNNNNGG 5 cut(s) 140, 568, 599, 614, 615
BsmFI GGGAC 2 cut(s) 160, 434
BsnI GGCC 3 cut(s) 24, 274, 710
BsoBI CYCGRG 1 cut(s) 608
Bsp120I GGGCCC 1 cut(s) 708
Bsp1286I GDGCHC 4 cut(s) 46, 592, 704, 712
Bsp143I GATC 4 cut(s) 187, 202, 336, 456
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 7 cut(s) 93, 225, 284, 329, 408, 480, 489
BspANI GGCC 3 cut(s) 24, 274, 710
BspLI GGNNCC 6 cut(s) 54, 189, 297, 591, 681, 710
BspPI GGATC 5 cut(s) 182, 195, 210, 344, 464
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 5 cut(s) 134, 220, 332, 344, 598
BssMI GATC 4 cut(s) 187, 202, 336, 456
BssT1I CCWWGG 2 cut(s) 220, 598
Bst2UI CCWGG 2 cut(s) 192, 345
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 220
BstKTI GATC 4 cut(s) 190, 205, 339, 459
BstMBI GATC 4 cut(s) 187, 202, 336, 456
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 5 cut(s) 328, 486, 489, 498, 521
BstNI CCWGG 2 cut(s) 192, 345
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 4 cut(s) 133, 190, 331, 343
BstSLI GKGCMC 2 cut(s) 46, 712
BstV1I GCAGC 2 cut(s) 63, 559
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 2 cut(s) 187, 202
BstYI RGATCY 2 cut(s) 187, 202
BsuRI GGCC 3 cut(s) 24, 274, 710
BtgI CCRYGG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 275, 490
Cac8I GCNNGC 1 cut(s) 648
Cfr13I GGNCC 4 cut(s) 296, 679, 708, 709
Csp6I GTAC 1 cut(s) 717
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 4 cut(s) 125, 221, 382, 651
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 1 cut(s) 83
DpnI GATC 4 cut(s) 189, 204, 338, 458
DpnII GATC 4 cut(s) 187, 202, 336, 456
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
EciI GGCGGA 2 cut(s) 108, 299
Eco130I CCWWGG 2 cut(s) 220, 598
Eco24I GRGCYC 3 cut(s) 592, 704, 712
Eco47I GGWCC 2 cut(s) 296, 679
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 708
EcoRII CCWGG 2 cut(s) 190, 343
EcoT14I CCWWGG 2 cut(s) 220, 598
EcoT38I GRGCYC 3 cut(s) 592, 704, 712
ErhI CCWWGG 2 cut(s) 220, 598
FaeI CATG 4 cut(s) 128, 224, 385, 654
FaiI YATR 6 cut(s) 126, 222, 383, 425, 652, 714
FaqI GGGAC 2 cut(s) 160, 434
FatI CATG 4 cut(s) 124, 220, 381, 650
Fnu4HI GCNGC 4 cut(s) 77, 481, 490, 573
FriOI GRGCYC 3 cut(s) 592, 704, 712
Fsp4HI GCNGC 4 cut(s) 77, 481, 490, 573
FspBI CTAG 3 cut(s) 452, 525, 705
GluI GCNGC 4 cut(s) 77, 481, 490, 573
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 3 cut(s) 24, 274, 710
HapII CCGG 2 cut(s) 134, 332
Hin1II CATG 4 cut(s) 128, 224, 385, 654
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 4 cut(s) 130, 242, 370, 473
HpaII CCGG 2 cut(s) 134, 332
HphI GGTGA 3 cut(s) 266, 413, 454
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 3 cut(s) 187, 300, 663
Hpy8I GTNNAC 1 cut(s) 679
Hpy99I CGWCG 4 cut(s) 92, 304, 464, 467
HpyAV CCTTC 2 cut(s) 173, 274
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 124, 381, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 328, 486, 489, 498, 521
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 4 cut(s) 128, 224, 385, 654
Kzo9I GATC 4 cut(s) 187, 202, 336, 456
LmnI GCTCC 2 cut(s) 84, 595
Lsp1109I GCAGC 2 cut(s) 63, 559
MaeI CTAG 3 cut(s) 452, 525, 705
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 254, 442, 653
MalI GATC 4 cut(s) 189, 204, 338, 458
MboI GATC 4 cut(s) 187, 202, 336, 456
MboII GAAGA 2 cut(s) 480, 550
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 187, 202
MhlI GDGCHC 4 cut(s) 46, 592, 704, 712
MluCI AATT 1 cut(s) 576
MmeI TCCRAC 5 cut(s) 139, 165, 219, 323, 641
MnlI CCTC 7 cut(s) 35, 38, 253, 421, 425, 502, 626
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 1 cut(s) 724
MspI CCGG 2 cut(s) 134, 332
MspR9I CCNGG 4 cut(s) 135, 192, 333, 345
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 192, 345
MwoI GCNNNNNNNGC 5 cut(s) 328, 486, 489, 498, 521
NciI CCSGG 2 cut(s) 135, 333
NcoI CCATGG 1 cut(s) 220
NdeII GATC 4 cut(s) 187, 202, 336, 456
NlaIII CATG 4 cut(s) 128, 224, 385, 654
NlaIV GGNNCC 6 cut(s) 54, 189, 297, 591, 681, 710
NmuCI GTSAC 3 cut(s) 254, 442, 653
NspI RCATGY 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 4 cut(s) 130, 242, 370, 473
PkrI GCNGC 4 cut(s) 78, 482, 491, 574
Psp6I CCWGG 2 cut(s) 190, 343
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 190, 343
PspN4I GGNNCC 6 cut(s) 54, 189, 297, 591, 681, 710
PspOMI GGGCCC 1 cut(s) 708
PspPI GGNCC 4 cut(s) 296, 679, 708, 709
PsuI RGATCY 2 cut(s) 187, 202
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
SaqAI TTAA 1 cut(s) 724
SatI GCNGC 4 cut(s) 77, 481, 490, 573
Sau3AI GATC 4 cut(s) 187, 202, 336, 456
Sau96I GGNCC 4 cut(s) 296, 679, 708, 709
ScaI AGTACT 1 cut(s) 718
ScrFI CCNGG 4 cut(s) 135, 192, 333, 345
SduI GDGCHC 4 cut(s) 46, 592, 704, 712
SetI ASST 7 cut(s) 63, 100, 196, 395, 513, 637, 670
SinI GGWCC 2 cut(s) 296, 679
Sse9I AATT 1 cut(s) 576
SsiI CCGC 7 cut(s) 93, 225, 284, 329, 408, 480, 489
SspMI CTAG 3 cut(s) 452, 525, 705
StyD4I CCNGG 4 cut(s) 133, 190, 331, 343
StyI CCWWGG 2 cut(s) 220, 598
TaaI ACNGT 1 cut(s) 659
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 212, 459
TasI AATT 1 cut(s) 576
TatI WGTACW 1 cut(s) 716
TauI GCSGC 2 cut(s) 483, 492
TfiI GAWTC 4 cut(s) 130, 242, 370, 473
Tru1I TTAA 1 cut(s) 724
Tru9I TTAA 1 cut(s) 724
TscAI CASTG 2 cut(s) 282, 490
TseFI GTSAC 3 cut(s) 254, 442, 653
TseI GCWGC 2 cut(s) 76, 572
Tsp45I GTSAC 3 cut(s) 254, 442, 653
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 2 cut(s) 164, 480
TspRI CASTG 2 cut(s) 282, 490
VpaK11BI GGWCC 2 cut(s) 296, 679
XceI RCATGY 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 3 cut(s) 452, 525, 705
ZrmI AGTACT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.