FvH4_1g17340

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008952
Physical Location & Seq
Forward (+)
10026943 .. 10029533
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17340.t1

Sequence Viewer

Length: 975 bp
ATGGATCGGTTCAGTCTTGTTCTGGTATGGTCACTTTGCCTTTCTTTGTGCATGTTCTCTACTCCCACATCCGCGCAGTTGAAAACAAACTTCTACGCCAATATCTGCCCCAATGTGGAATCCATCGTCAAAAGTGCTGTCACTAAGAAGTTCCAGCAAACGTTTGTGACTGTTCCCGCCACAATTCGTCTCTTCTTCCACGATTGCTTTGTCCAGGGCTGTGATGCTTCAGTCATAGTTGCCTCAAGTGGAAGCAACAAAGCTGAGAAAGACCACCCTGATAATCTGTCACTGGCCGGAGATGGGTTCGATACTGTGATCAAAGCAAAAGCAGCCGTCGATGCAGTTGCACAGTGCAGAAACAAAGTCTCTTGTGCAGATATTCTTGCTTTAGCCACCAGAGACGCCATTGTTCTGTCTGGGGGGCCTTCATATCCAGTTGAATTGGGAAGACTGGATGGACTGCGCTCAACTTCATCAAGTGTAAATGGAAAGCTTCCCCAGCCAACCTTCAATGTGGATCAGCTCACTTCCATGTTTAAAGCAAACGGGTTAGATCAGACGGACATGGTTGCTCTTTCAGCGGCGCACACCGTCGGATTCTCTCATTGCAGCAAGTTTGCTAGCCGGATCCGGAACCGGGTTGACCCCACGATGAGCAAAACCTACGCTGCACAATTGCAACAACAGTGTCCGACGAACGTCGACCCTAACATAGCCGTCAACATGGACCCAAACACGCCCAGAACCTTTGACAATATGTACTACAAGAACCTTCAGCAGGGCAAAGGCTTGTTCACCTCAGATCAGGTACTTTTCACTGATACCAGGACCCGGTCCACTGTCAATACGTGGGCCTCAAACAATGCAGCTTTCCAAAAGGCCTTTATTAATGCCATGACAAAATTGGGCCGGGTCGGAGTCAAGACCGGCAGCAATGGTAATATTCGACGTGATTGTGCTGTTTTTAACTGA

Protein Analysis

325

Amino Acids

35.19

Weight (kDa)

9.09

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 288 8.1e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 705
AccII CGCG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 633
AciI CCGC 3 cut(s) 72, 177, 584
AclI AACGTT 1 cut(s) 161
AclWI GGATC 4 cut(s) 12, 528, 625, 638
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 213, 761
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 2 cut(s) 764, 813
AfiI CCNNNNNNNGG 5 cut(s) 115, 303, 640, 781, 834
AgsI TTSAA 3 cut(s) 82, 443, 514
AjiI CACGTC 1 cut(s) 953
AjnI CCWGG 2 cut(s) 213, 827
AluBI AGCT 4 cut(s) 263, 496, 526, 872
AluI AGCT 4 cut(s) 263, 496, 526, 872
Alw26I GTCTC 3 cut(s) 194, 373, 396
AlwI GGATC 4 cut(s) 12, 528, 625, 638
Aor13HI TCCGGA 1 cut(s) 633
AoxI GGCC 5 cut(s) 294, 425, 855, 882, 910
ApeKI GCWGC 5 cut(s) 332, 612, 671, 869, 933
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AseI ATTAAT 1 cut(s) 891
AspLEI GCGC 3 cut(s) 76, 468, 589
AspS9I GGNCC 6 cut(s) 425, 730, 831, 837, 855, 910
AsuC2I CCSGG 3 cut(s) 641, 835, 914
AsuHPI GGTGA 1 cut(s) 790
AsuNHI GCTAGC 1 cut(s) 623
AvaII GGWCC 3 cut(s) 730, 831, 837
BamHI GGATCC 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 5 cut(s) 344, 624, 658, 881, 945
BccI CCATC 3 cut(s) 131, 296, 452
BceAI ACGGC 2 cut(s) 320, 704
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 2 cut(s) 215, 829
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 3 cut(s) 641, 835, 914
BcoDI GTCTC 3 cut(s) 194, 373, 396
BfaI CTAG 1 cut(s) 624
BisI GCNGC 6 cut(s) 333, 585, 613, 672, 870, 934
BlsI GCNGC 6 cut(s) 334, 586, 614, 673, 871, 935
Bme1390I CCNGG 5 cut(s) 215, 641, 829, 835, 914
Bme18I GGWCC 3 cut(s) 730, 831, 837
BmgBI CACGTC 1 cut(s) 953
BmgT120I GGNCC 6 cut(s) 425, 730, 831, 837, 855, 910
BmiI GGNNCC 5 cut(s) 426, 632, 638, 732, 833
BmrFI CCNGG 5 cut(s) 215, 641, 829, 835, 914
BmsI GCATC 2 cut(s) 214, 331
BmtI GCTAGC 1 cut(s) 627
BoxI GACNNNNGTC 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 457
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 3 cut(s) 641, 835, 914
BsaAI YACGTR 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 633
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 303, 640, 781, 834
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 297, 437, 459
Bse3DI GCAATG 2 cut(s) 607, 943
BseAI TCCGGA 1 cut(s) 633
BseBI CCWGG 2 cut(s) 215, 829
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 68, 463
BseLI CCNNNNNNNGG 5 cut(s) 115, 303, 640, 781, 834
BseMI GCAATG 2 cut(s) 607, 943
BseMII CTCAG 2 cut(s) 255, 816
BseNI ACTGG 3 cut(s) 297, 437, 459
BseXI GCAGC 5 cut(s) 344, 624, 658, 881, 945
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 3 cut(s) 376, 396, 657
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 5 cut(s) 296, 427, 857, 884, 912
BsiSI CCGG 7 cut(s) 297, 628, 634, 640, 835, 913, 930
BslI CCNNNNNNNGG 5 cut(s) 115, 303, 640, 781, 834
BsmAI GTCTC 3 cut(s) 194, 373, 396
BsmBI CGTCTC 2 cut(s) 194, 396
BsnI GGCC 5 cut(s) 296, 427, 857, 884, 912
Bsp13I TCCGGA 1 cut(s) 633
Bsp143I GATC 6 cut(s) 4, 318, 520, 556, 630, 805
BspACI CCGC 3 cut(s) 72, 177, 584
BspANI GGCC 5 cut(s) 296, 427, 857, 884, 912
BspCNI CTCAG 2 cut(s) 256, 815
BspEI TCCGGA 1 cut(s) 633
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 5 cut(s) 426, 632, 638, 732, 833
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 4 cut(s) 12, 528, 625, 638
BsrDI GCAATG 2 cut(s) 607, 943
BsrFI RCCGGY 1 cut(s) 929
BsrI ACTGG 3 cut(s) 297, 437, 459
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 6 cut(s) 4, 318, 520, 556, 630, 805
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 215, 829
Bst4CI ACNGT 6 cut(s) 172, 316, 354, 595, 690, 844
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 3 cut(s) 144, 264, 802
BstENI CCTNNNNNAGG 1 cut(s) 779
BstF5I GGATG 2 cut(s) 68, 463
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 3 cut(s) 76, 468, 589
BstKTI GATC 6 cut(s) 7, 321, 523, 559, 633, 808
BstMAI GTCTC 3 cut(s) 194, 373, 396
BstMBI GATC 6 cut(s) 4, 318, 520, 556, 630, 805
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
BstNI CCWGG 2 cut(s) 215, 829
BstNSI RCATGY 1 cut(s) 55
BstPAI GACNNNNGTC 1 cut(s) 701
BstSCI CCNGG 5 cut(s) 213, 639, 827, 833, 912
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 5 cut(s) 344, 624, 658, 881, 945
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 5 cut(s) 296, 427, 857, 884, 912
BtrI CACGTC 1 cut(s) 953
BtsCI GGATG 2 cut(s) 68, 463
BtsIMutI CAGTG 5 cut(s) 290, 359, 695, 819, 840
Cac8I GCNNGC 1 cut(s) 625
CfoI GCGC 3 cut(s) 76, 468, 589
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 6 cut(s) 425, 730, 831, 837, 855, 910
CseI GACGC 1 cut(s) 413
Csp6I GTAC 2 cut(s) 763, 812
CviAII CATG 5 cut(s) 52, 535, 568, 727, 898
CviQI GTAC 2 cut(s) 763, 812
DdeI CTNAG 3 cut(s) 144, 264, 802
DpnI GATC 6 cut(s) 6, 320, 522, 558, 632, 807
DpnII GATC 6 cut(s) 4, 318, 520, 556, 630, 805
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 884
Eco47I GGWCC 3 cut(s) 730, 831, 837
Eco57I CTGAAG 2 cut(s) 213, 761
EcoNI CCTNNNNNAGG 1 cut(s) 779
EcoO109I RGGNCCY 2 cut(s) 425, 831
EcoRII CCWGG 2 cut(s) 213, 827
Esp3I CGTCTC 2 cut(s) 194, 396
FaeI CATG 5 cut(s) 55, 538, 571, 730, 901
FatI CATG 5 cut(s) 51, 534, 567, 726, 897
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 6 cut(s) 333, 585, 613, 672, 870, 934
FokI GGATG 2 cut(s) 55, 470
Fsp4HI GCNGC 6 cut(s) 333, 585, 613, 672, 870, 934
FspBI CTAG 1 cut(s) 624
GlaI GCGC 3 cut(s) 75, 467, 588
GluI GCNGC 6 cut(s) 333, 585, 613, 672, 870, 934
GsaI CCCAGC 1 cut(s) 505
HaeIII GGCC 5 cut(s) 296, 427, 857, 884, 912
HapII CCGG 7 cut(s) 297, 628, 634, 640, 835, 913, 930
HgaI GACGC 1 cut(s) 413
HhaI GCGC 3 cut(s) 76, 468, 589
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 5 cut(s) 55, 538, 571, 730, 901
Hin6I GCGC 3 cut(s) 74, 466, 587
HinP1I GCGC 3 cut(s) 74, 466, 587
HincII GTYRAC 3 cut(s) 646, 706, 724
HindII GTYRAC 3 cut(s) 646, 706, 724
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 3 cut(s) 119, 600, 921
HpaII CCGG 7 cut(s) 297, 628, 634, 640, 835, 913, 930
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 5 cut(s) 646, 706, 724, 798, 840
Hpy188I TCNGA 5 cut(s) 561, 599, 696, 805, 920
Hpy188III TCNNGA 2 cut(s) 634, 925
Hpy8I GTNNAC 5 cut(s) 646, 706, 724, 798, 840
Hpy99I CGWCG 5 cut(s) 341, 599, 700, 707, 954
HpyAV CCTTC 3 cut(s) 438, 520, 785
HpyCH4III ACNGT 6 cut(s) 172, 316, 354, 595, 690, 844
HpyCH4IV ACGT 4 cut(s) 161, 702, 851, 952
HpyCH4V TGCA 9 cut(s) 51, 344, 350, 357, 377, 612, 674, 682, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
HpyF3I CTNAG 3 cut(s) 144, 264, 802
HpySE526I ACGT 4 cut(s) 161, 702, 851, 952
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 5 cut(s) 55, 538, 571, 730, 901
HspAI GCGC 3 cut(s) 74, 466, 587
Kpn2I TCCGGA 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 6 cut(s) 4, 318, 520, 556, 630, 805
Lsp1109I GCAGC 5 cut(s) 344, 624, 658, 881, 945
LweI GCATC 2 cut(s) 214, 331
MaeI CTAG 1 cut(s) 624
MaeII ACGT 4 cut(s) 161, 702, 851, 952
MaeIII GTNAC 4 cut(s) 30, 139, 166, 288
MalI GATC 6 cut(s) 6, 320, 522, 558, 632, 807
MboI GATC 6 cut(s) 4, 318, 520, 556, 630, 805
MboII GAAGA 3 cut(s) 184, 187, 462
MfeI CAATTG 1 cut(s) 677
MflI RGATCY 1 cut(s) 630
MluCI AATT 4 cut(s) 183, 443, 677, 905
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 3 cut(s) 577, 719, 898
MnlI CCTC 3 cut(s) 253, 811, 868
MroI TCCGGA 1 cut(s) 633
MseI TTAA 3 cut(s) 540, 891, 969
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 7 cut(s) 297, 628, 634, 640, 835, 913, 930
MspR9I CCNGG 5 cut(s) 215, 641, 829, 835, 914
MunI CAATTG 1 cut(s) 677
MvaI CCWGG 2 cut(s) 215, 829
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
NciI CCSGG 3 cut(s) 641, 835, 914
NdeII GATC 6 cut(s) 4, 318, 520, 556, 630, 805
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 5 cut(s) 55, 538, 571, 730, 901
NlaIV GGNNCC 5 cut(s) 426, 632, 638, 732, 833
NmuCI GTSAC 4 cut(s) 30, 139, 166, 288
NspI RCATGY 1 cut(s) 55
PceI AGGCCT 1 cut(s) 884
PfeI GAWTC 2 cut(s) 119, 600
PflFI GACNNNGTC 1 cut(s) 835
PkrI GCNGC 6 cut(s) 334, 586, 614, 673, 871, 935
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
Ppu21I YACGTR 1 cut(s) 852
PpuMI RGGWCCY 1 cut(s) 831
PshAI GACNNNNGTC 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 891
Psp1406I AACGTT 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 213, 827
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 213, 827
PspN4I GGNNCC 5 cut(s) 426, 632, 638, 732, 833
PspPI GGNCC 6 cut(s) 425, 730, 831, 837, 855, 910
PspPPI RGGWCCY 1 cut(s) 831
PsuI RGATCY 1 cut(s) 630
PsyI GACNNNGTC 1 cut(s) 835
RsaI GTAC 2 cut(s) 764, 813
RsaNI GTAC 2 cut(s) 763, 812
RseI CAYNNNNRTG 1 cut(s) 533
SalI GTCGAC 1 cut(s) 704
SaqAI TTAA 3 cut(s) 540, 891, 969
SatI GCNGC 6 cut(s) 333, 585, 613, 672, 870, 934
Sau3AI GATC 6 cut(s) 4, 318, 520, 556, 630, 805
Sau96I GGNCC 6 cut(s) 425, 730, 831, 837, 855, 910
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 5 cut(s) 215, 641, 829, 835, 914
SfaNI GCATC 2 cut(s) 214, 331
SinI GGWCC 3 cut(s) 730, 831, 837
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 4 cut(s) 183, 443, 677, 905
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 3 cut(s) 72, 177, 584
SspI AATATT 1 cut(s) 946
SspMI CTAG 1 cut(s) 624
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 5 cut(s) 213, 639, 827, 833, 912
TaaI ACNGT 6 cut(s) 172, 316, 354, 595, 690, 844
TaiI ACGT 4 cut(s) 164, 705, 854, 955
TaqI TCGA 4 cut(s) 309, 339, 705, 949
TasI AATT 4 cut(s) 183, 443, 677, 905
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 2 cut(s) 119, 600
Tru1I TTAA 3 cut(s) 540, 891, 969
Tru9I TTAA 3 cut(s) 540, 891, 969
TscAI CASTG 5 cut(s) 297, 359, 695, 826, 847
TseFI GTSAC 4 cut(s) 30, 139, 166, 288
TseI GCWGC 5 cut(s) 332, 612, 671, 869, 933
Tsp45I GTSAC 4 cut(s) 30, 139, 166, 288
TspDTI ATGAA 2 cut(s) 420, 465
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 5 cut(s) 297, 359, 695, 826, 847
Tth111I GACNNNGTC 1 cut(s) 835
VpaK11BI GGWCC 3 cut(s) 730, 831, 837
VspI ATTAAT 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 779
XceI RCATGY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.