AT5G67400

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008952
Physical Location & Seq
Forward (+)
26894778 .. 26896488
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67400.1

Sequence Viewer

Length: 990 bp
ATGGCGCGGTTCAGTCTGGTTGTAGTCGTGACTCTTAGTCTTGCCATCTCTATGTTCCCTGACACAACCACTGCTCAACTCAAAACCAATTTCTACGGAAACTCATGTCCGAATGTTGAACAAATCGTGAAAAAAGTCGTCCAAGAAAAAATCAAACAGACCTTCGTCACCATCCCAGCTACTCTCCGCCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCGTCGGTCATGATTCAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGGCCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTCTTGACGCTATCCCAAGTTGCAAAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCCGTGATGTTGTTGTCGCCGCCAAAGGTCCGTCGTACGCAGTGGAACTCGGAAGGTTTGATGGTTTGGTGTCGACTGCGGCTAGCGTTAACGGAAACTTGCCCGGACCAAATAACAAAGTTACAGAACTTAACAAGCTTTTTGCCAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACACTTGGATTCGCCCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCTCACACACGCCGTTGACCCAACTCTAAACAAAGCCTACGCTAAAGAACTTCAGTTGGCTTGTCCCAAGACAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGACAATTCGACAACATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTCACCGATGGTCGCTCAAAGCCCACCGTTAACGATTGGGCCAAGAATTCTGTTGCTTTCAACAAGGCTTTCGTAACCGCTATGACCAAACTCGGCCGCGTTGGCGTTAAGACTAGACGCAACGGTAACATTCGTCGTGACTGTGGTGCCTTTAACTGA

Protein Analysis

329

Amino Acids

35.93

Weight (kDa)

9.44

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 293 1.5e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 977
AccI GTMKAC 1 cut(s) 470
AccII CGCG 2 cut(s) 7, 930
AciI CCGC 7 cut(s) 7, 187, 417, 476, 584, 909, 928
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 2 cut(s) 294, 925
AcsI RAATTY 1 cut(s) 877
AcuI CTGAAG 1 cut(s) 680
AfaI GTAC 1 cut(s) 434
AgsI TTSAA 6 cut(s) 119, 242, 625, 643, 784, 892
AhdI GACNNNNNGTC 1 cut(s) 36
AluBI AGCT 3 cut(s) 179, 335, 535
AluI AGCT 3 cut(s) 179, 335, 535
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 1 cut(s) 279
AoxI GGCC 3 cut(s) 294, 870, 925
ApoI RAATTY 1 cut(s) 877
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 425, 503, 745, 870
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 160, 826
AsuNHI GCTAGC 1 cut(s) 479
AvaII GGWCC 3 cut(s) 425, 503, 745
BanI GGYRCC 1 cut(s) 977
BccI CCATC 6 cut(s) 53, 179, 296, 452, 743, 833
BceAI ACGGC 1 cut(s) 641
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 2 cut(s) 480, 945
BglI GCCNNNNNGGC 1 cut(s) 933
BisI GCNGC 4 cut(s) 417, 477, 585, 928
BlsI GCNGC 4 cut(s) 418, 478, 586, 929
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 3 cut(s) 425, 503, 745
BmeRI GACNNNNNGTC 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 425, 503, 745, 870
BmiI GGNNCC 2 cut(s) 747, 979
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 483
BoxI GACNNNNGTC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 501
BseGI GGATG 3 cut(s) 171, 224, 274
BseX3I CGGCCG 1 cut(s) 925
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 2 cut(s) 7, 930
Bsh1285I CGRYCG 1 cut(s) 928
BshFI GGCC 3 cut(s) 296, 872, 927
BshNI GGYRCC 1 cut(s) 977
BsiEI CGRYCG 1 cut(s) 928
BsiSI CCGG 2 cut(s) 297, 501
BsiWI CGTACG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 693
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 693
BsnI GGCC 3 cut(s) 296, 872, 927
Bsp143I GATC 3 cut(s) 271, 318, 570
BspACI CCGC 7 cut(s) 7, 187, 417, 476, 584, 909, 928
BspANI GGCC 3 cut(s) 296, 872, 927
BspFNI CGCG 2 cut(s) 7, 930
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 747, 979
BspOI GCTAGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 977
BssMI GATC 3 cut(s) 271, 318, 570
Bst4CI ACNGT 4 cut(s) 718, 859, 956, 974
Bst6I CTCTTC 3 cut(s) 197, 815, 836
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 171, 224, 274
BstFNI CGCG 2 cut(s) 7, 930
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 274, 321, 573
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 271, 318, 570
BstMCI CGRYCG 1 cut(s) 928
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 581, 933
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 499
BstUI CGCG 2 cut(s) 7, 930
BstXI CCANNNNNNTGG 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 925
BsuRI GGCC 3 cut(s) 296, 872, 927
BtsCI GGATG 3 cut(s) 171, 224, 274
BtsI GCAGTG 2 cut(s) 69, 444
BtsIMutI CAGTG 2 cut(s) 69, 444
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 4 cut(s) 425, 503, 745, 870
CseI GACGC 3 cut(s) 216, 350, 957
Csp6I GTAC 1 cut(s) 433
CviAII CATG 4 cut(s) 105, 235, 568, 742
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 1 cut(s) 35
DpnI GATC 3 cut(s) 273, 320, 572
DpnII GATC 3 cut(s) 271, 318, 570
DriI GACNNNNNGTC 1 cut(s) 36
EaeI YGGCCR 2 cut(s) 294, 925
EagI CGGCCG 1 cut(s) 925
Eam1104I CTCTTC 3 cut(s) 197, 815, 836
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 3 cut(s) 197, 815, 836
EciI GGCGGA 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 925
Eco47I GGWCC 3 cut(s) 425, 503, 745
Eco52I CGGCCG 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 877
FaeI CATG 4 cut(s) 108, 238, 571, 745
FaiI YATR 6 cut(s) 53, 106, 236, 569, 743, 914
FaqI GGGAC 1 cut(s) 693
FatI CATG 4 cut(s) 104, 234, 567, 741
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 4 cut(s) 417, 477, 585, 928
FokI GGATG 3 cut(s) 158, 231, 261
Fsp4HI GCNGC 4 cut(s) 417, 477, 585, 928
FspBI CTAG 2 cut(s) 480, 945
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 417, 477, 585, 928
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 3 cut(s) 296, 872, 927
HapII CCGG 2 cut(s) 297, 501
HgaI GACGC 3 cut(s) 216, 350, 957
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 108, 238, 571, 745
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 5 cut(s) 471, 487, 661, 721, 862
HindII GTYRAC 5 cut(s) 471, 487, 661, 721, 862
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 7 cut(s) 31, 238, 600, 630, 729, 787, 807
HpaI GTTAAC 2 cut(s) 487, 862
HpaII CCGG 2 cut(s) 297, 501
HphI GGTGA 2 cut(s) 160, 826
Hpy166II GTNNAC 5 cut(s) 471, 487, 661, 721, 862
Hpy188I TCNGA 3 cut(s) 111, 449, 820
Hpy188III TCNNGA 7 cut(s) 28, 127, 235, 278, 338, 784, 968
Hpy8I GTNNAC 5 cut(s) 471, 487, 661, 721, 862
Hpy99I CGWCG 3 cut(s) 232, 433, 969
HpyAV CCTTC 3 cut(s) 172, 262, 444
HpyCH4III ACNGT 4 cut(s) 718, 859, 956, 974
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 357, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 581, 933
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 4 cut(s) 108, 238, 571, 745
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 2 cut(s) 487, 862
Kzo9I GATC 3 cut(s) 271, 318, 570
LpnPI CCDG 6 cut(s) 2, 72, 189, 291, 310, 514
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 480, 945
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 6 cut(s) 28, 166, 517, 904, 956, 968
MalI GATC 3 cut(s) 273, 320, 572
MboI GATC 3 cut(s) 271, 318, 570
MboII GAAGA 4 cut(s) 184, 187, 802, 823
MluCI AATT 3 cut(s) 88, 764, 877
MlyI GAGTC 2 cut(s) 25, 801
MmeI TCCRAC 1 cut(s) 843
MnlI CCTC 3 cut(s) 200, 556, 656
MseI TTAA 5 cut(s) 486, 528, 861, 939, 984
MslI CAYNNNNRTG 2 cut(s) 50, 740
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 2 cut(s) 297, 501
MspR9I CCNGG 1 cut(s) 501
MvnI CGCG 2 cut(s) 7, 930
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 581, 933
NciI CCSGG 1 cut(s) 501
NdeII GATC 3 cut(s) 271, 318, 570
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 4 cut(s) 108, 238, 571, 745
NlaIV GGNNCC 2 cut(s) 747, 979
NmeAIII GCCGAG 2 cut(s) 289, 903
NmuCI GTSAC 3 cut(s) 28, 166, 968
PagI TCATGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 5 cut(s) 238, 600, 630, 729, 787
Pfl23II CGTACG 1 cut(s) 432
PkrI GCNGC 4 cut(s) 418, 478, 586, 929
PleI GAGTC 2 cut(s) 25, 801
PpsI GAGTC 2 cut(s) 25, 801
PshAI GACNNNNGTC 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 175
PspLI CGTACG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 747, 979
PspPI GGNCC 4 cut(s) 425, 503, 745, 870
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 50, 740
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 5 cut(s) 486, 528, 861, 939, 984
SatI GCNGC 4 cut(s) 417, 477, 585, 928
Sau3AI GATC 3 cut(s) 271, 318, 570
Sau96I GGNCC 4 cut(s) 425, 503, 745, 870
SchI GAGTC 2 cut(s) 25, 801
ScrFI CCNGG 1 cut(s) 501
SetI ASST 8 cut(s) 164, 181, 315, 337, 427, 455, 537, 648
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 3 cut(s) 425, 503, 745
SmiMI CAYNNNNRTG 2 cut(s) 50, 740
Sse9I AATT 3 cut(s) 88, 764, 877
SsiI CCGC 7 cut(s) 7, 187, 417, 476, 584, 909, 928
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 480, 945
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 4 cut(s) 718, 859, 956, 974
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 470, 768
TaqII GACCGA 1 cut(s) 220
TasI AATT 3 cut(s) 88, 764, 877
TauI GCSGC 4 cut(s) 419, 479, 587, 930
TfiI GAWTC 5 cut(s) 238, 600, 630, 729, 787
Tru1I TTAA 5 cut(s) 486, 528, 861, 939, 984
Tru9I TTAA 5 cut(s) 486, 528, 861, 939, 984
TscAI CASTG 2 cut(s) 76, 444
TseFI GTSAC 3 cut(s) 28, 166, 968
Tsp45I GTSAC 3 cut(s) 28, 166, 968
TspGWI ACGGA 3 cut(s) 111, 417, 504
TspRI CASTG 2 cut(s) 76, 444
VpaK11BI GGWCC 3 cut(s) 425, 503, 745
XapI RAATTY 1 cut(s) 877
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 2 cut(s) 480, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.