AT4G37520

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008952
Physical Location & Seq
Forward (+)
17631500 .. 17633249
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37520.1

Sequence Viewer

Length: 990 bp
ATGGTTGTGGTGAACAAAACGAATCTCTTATTGCTTCTTCTCTCTCTATGTCTCACCCTCGACCTCTCCTCCGCACAACTCCGCCGTAACTTCTACGCCGGAAGTTGTCCTAACGTCGAACAAATCGTTAGAAACGCCGTACAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTACGCCTCTATTTCCATGATTGTTTCGTCAATGGGTGTGATGCATCAGTGATGATAGCGTCAACAAATAATAATAAGGCGGAGAAGGATCATGAGGAAAATTTATCGTTGGCCGGAGATGGATTCGACACCGTCATTAAAGCTAAAGAAGCTCTCGATGCCGTCCCAAATTGTCGTAACAAAGTTTCATGCGCTGATATTCTCACGATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGACCACAATACGACGTGGAATTGGGAAGGCTAGATGGACTATCATCAACAGCGGCTAGCGTCGGAGGGAAGTTGCCGCATCCGACCGACGATGTCAATAAACTCACTTCACTCTTCGCCAAAAACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGCGCATTGCACAAAAGTGTTCAATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCCCACGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCGAAACATAGATCCAAGAGTGGCTATTAACATGGACCCAACAACACCAAGACAATTCGACAACGTTTACTACAAAAACTTGCAACAAGGGAAAGGATTGTTCACGTCGGATCAAGTCTTATTCACGGATCGTCGGTCAAAGCCAACCGTTGACTTATGGGCTAATAATGGACAGTTGTTTAATCAAGCTTTTATTAACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACTGGTAGTAATGGTAATATCCGTCGTGATTGTGGAGCTTTTAATTGA

Protein Analysis

329

Amino Acids

36.08

Weight (kDa)

8.9

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 293 3.4e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 408
AccII CGCG 1 cut(s) 605
AciI CCGC 7 cut(s) 72, 82, 177, 263, 419, 476, 500
AclI AACGTT 1 cut(s) 774
AclWI GGATC 6 cut(s) 279, 656, 669, 716, 828, 846
AcoI YGGCCR 2 cut(s) 294, 393
AcsI RAATTY 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 2 cut(s) 625, 643
AjiI CACGTC 2 cut(s) 439, 816
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 6 cut(s) 326, 335, 694, 899, 922, 980
AluI AGCT 6 cut(s) 326, 335, 694, 899, 922, 980
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 6 cut(s) 279, 656, 669, 716, 828, 846
AoxI GGCC 3 cut(s) 294, 393, 550
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 2 cut(s) 377, 607
AspS9I GGNCC 2 cut(s) 425, 745
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 22, 46, 157
AsuNHI GCTAGC 1 cut(s) 479
AvaII GGWCC 2 cut(s) 425, 745
BaeGI GKGCMC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 395
BamHI GGATCC 1 cut(s) 661
BauI CACGAG 1 cut(s) 399
BccI CCATC 3 cut(s) 296, 385, 452
BceAI ACGGC 4 cut(s) 69, 122, 329, 565
BclI TGATCA 1 cut(s) 915
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 455, 480
BisI GCNGC 2 cut(s) 477, 500
BlsI GCNGC 2 cut(s) 478, 501
Bme1390I CCNGG 1 cut(s) 583
Bme18I GGWCC 2 cut(s) 425, 745
BmgBI CACGTC 2 cut(s) 439, 816
BmgT120I GGNCC 2 cut(s) 425, 745
BmiI GGNNCC 2 cut(s) 663, 747
BmrFI CCNGG 1 cut(s) 583
BmsI GCATC 4 cut(s) 214, 236, 331, 511
BmtI GCTAGC 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 583
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 582, 666
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse1I ACTGG 1 cut(s) 949
Bse3DI GCAATG 1 cut(s) 607
BseDI CCNNGG 2 cut(s) 582, 666
BseGI GGATG 1 cut(s) 502
BseMI GCAATG 1 cut(s) 607
BseNI ACTGG 1 cut(s) 949
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 3 cut(s) 296, 395, 552
BsiEI CGRYCG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 99, 297, 582
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 3 cut(s) 296, 395, 552
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
BspACI CCGC 7 cut(s) 72, 82, 177, 263, 419, 476, 500
BspANI GGCC 3 cut(s) 296, 395, 552
BspFNI CGCG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 663, 747
BspOI GCTAGC 1 cut(s) 483
BspPI GGATC 6 cut(s) 279, 656, 669, 716, 828, 846
BsrDI GCAATG 1 cut(s) 607
BsrI ACTGG 1 cut(s) 949
BssECI CCNNGG 2 cut(s) 582, 666
BssMI GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
BssNI GRCGYC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 4 cut(s) 316, 670, 859, 885
Bst6I CTCTTC 1 cut(s) 542
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 2 cut(s) 377, 607
BstKTI GATC 7 cut(s) 274, 573, 664, 724, 823, 841, 918
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 2 cut(s) 332, 341
BstSCI CCNGG 1 cut(s) 581
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 661, 721
BstYI RGATCY 2 cut(s) 661, 721
BsuRI GGCC 3 cut(s) 296, 395, 552
BtgI CCRYGG 1 cut(s) 666
BtrI CACGTC 2 cut(s) 439, 816
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 377, 607
Cfr13I GGNCC 2 cut(s) 425, 745
CseI GACGC 3 cut(s) 231, 472, 690
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 5 cut(s) 200, 275, 372, 568, 742
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 554
DpnI GATC 7 cut(s) 273, 572, 663, 723, 822, 840, 917
DpnII GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
EaeI YGGCCR 2 cut(s) 294, 393
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
EciI GGCGGA 2 cut(s) 71, 278
Eco47I GGWCC 2 cut(s) 425, 745
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 5 cut(s) 203, 278, 375, 571, 745
FaiI YATR 9 cut(s) 49, 201, 276, 373, 569, 634, 719, 743, 868
FaqI GGGAC 1 cut(s) 332
FatI CATG 5 cut(s) 199, 274, 371, 567, 741
FauI CCCGC 2 cut(s) 184, 412
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 477, 500
FokI GGATG 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 477, 500
FspBI CTAG 2 cut(s) 455, 480
GlaI GCGC 2 cut(s) 376, 606
GluI GCNGC 2 cut(s) 477, 500
HaeIII GGCC 3 cut(s) 296, 395, 552
HapII CCGG 3 cut(s) 99, 297, 582
HgaI GACGC 3 cut(s) 231, 472, 690
HhaI GCGC 2 cut(s) 377, 607
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 5 cut(s) 203, 278, 375, 571, 745
Hin6I GCGC 2 cut(s) 375, 605
HinP1I GCGC 2 cut(s) 375, 605
HincII GTYRAC 3 cut(s) 246, 673, 862
HindII GTYRAC 3 cut(s) 246, 673, 862
HindIII AAGCTT 2 cut(s) 897, 920
HinfI GANTC 3 cut(s) 22, 306, 600
HpaI GTTAAC 1 cut(s) 673
HpaII CCGG 3 cut(s) 99, 297, 582
HphI GGTGA 3 cut(s) 22, 46, 157
Hpy166II GTNNAC 7 cut(s) 13, 246, 425, 673, 778, 813, 862
Hpy188I TCNGA 4 cut(s) 488, 507, 630, 820
Hpy188III TCNNGA 5 cut(s) 275, 338, 388, 401, 968
Hpy8I GTNNAC 7 cut(s) 13, 246, 425, 673, 778, 813, 862
Hpy99I CGWCG 9 cut(s) 119, 410, 440, 488, 515, 706, 820, 846, 969
HpyAV CCTTC 2 cut(s) 262, 444
HpyCH4III ACNGT 4 cut(s) 316, 670, 859, 885
HpyCH4IV ACGT 6 cut(s) 114, 405, 438, 684, 774, 815
HpyCH4V TGCA 3 cut(s) 227, 612, 793
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 341
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 6 cut(s) 114, 405, 438, 684, 774, 815
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 5 cut(s) 203, 278, 375, 571, 745
HspAI GCGC 2 cut(s) 375, 605
Ksp22I TGATCA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 673
Kzo9I GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
LmnI GCTCC 1 cut(s) 977
LpnPI CCDG 4 cut(s) 112, 310, 595, 930
LweI GCATC 4 cut(s) 214, 236, 331, 511
MaeI CTAG 2 cut(s) 455, 480
MaeII ACGT 6 cut(s) 114, 405, 438, 684, 774, 815
MaeIII GTNAC 4 cut(s) 86, 359, 401, 685
MalI GATC 7 cut(s) 273, 572, 663, 723, 822, 840, 917
MboI GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
MboII GAAGA 2 cut(s) 29, 529
MflI RGATCY 2 cut(s) 661, 721
MhlI GDGCHC 1 cut(s) 589
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 5 cut(s) 283, 352, 443, 764, 985
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 4 cut(s) 178, 466, 530, 798
MnlI CCTC 7 cut(s) 68, 74, 79, 200, 271, 482, 720
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 395
MseI TTAA 9 cut(s) 321, 411, 561, 672, 738, 891, 906, 939, 984
MslI CAYNNNNRTG 1 cut(s) 617
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 3 cut(s) 99, 297, 582
MspR9I CCNGG 1 cut(s) 583
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 2 cut(s) 332, 341
NciI CCSGG 1 cut(s) 583
NdeII GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 5 cut(s) 203, 278, 375, 571, 745
NlaIV GGNNCC 2 cut(s) 663, 747
NmuCI GTSAC 2 cut(s) 401, 685
NsiI ATGCAT 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 617
PagI TCATGA 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 22, 306, 600
PflFI GACNNNGTC 2 cut(s) 314, 515
PkrI GCNGC 2 cut(s) 478, 501
Ppu21I YACGTR 1 cut(s) 685
Psp1406I AACGTT 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 663, 747
PspPI GGNCC 2 cut(s) 425, 745
PsuI RGATCY 2 cut(s) 661, 721
PsyI GACNNNGTC 2 cut(s) 314, 515
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 9 cut(s) 321, 411, 561, 672, 738, 891, 906, 939, 984
SatI GCNGC 2 cut(s) 477, 500
Sau3AI GATC 7 cut(s) 271, 570, 661, 721, 820, 838, 915
Sau96I GGNCC 2 cut(s) 425, 745
ScrFI CCNGG 1 cut(s) 583
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 4 cut(s) 214, 236, 331, 511
SinI GGWCC 2 cut(s) 425, 745
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 5 cut(s) 283, 352, 443, 764, 985
SsiI CCGC 7 cut(s) 72, 82, 177, 263, 419, 476, 500
SspMI CTAG 2 cut(s) 455, 480
StyD4I CCNGG 1 cut(s) 581
TaaI ACNGT 4 cut(s) 316, 670, 859, 885
TaiI ACGT 6 cut(s) 117, 408, 441, 687, 777, 818
TaqI TCGA 7 cut(s) 60, 117, 309, 339, 712, 768, 911
TaqII GACCGA 2 cut(s) 524, 834
TasI AATT 5 cut(s) 283, 352, 443, 764, 985
TauI GCSGC 2 cut(s) 479, 502
TfiI GAWTC 3 cut(s) 22, 306, 600
Tru1I TTAA 9 cut(s) 321, 411, 561, 672, 738, 891, 906, 939, 984
Tru9I TTAA 9 cut(s) 321, 411, 561, 672, 738, 891, 906, 939, 984
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 401, 685
Tsp45I GTSAC 2 cut(s) 401, 685
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 2 cut(s) 851, 953
TspRI CASTG 1 cut(s) 237
Tth111I GACNNNGTC 2 cut(s) 314, 515
VpaK11BI GGWCC 2 cut(s) 425, 745
XapI RAATTY 1 cut(s) 283
XspI CTAG 2 cut(s) 455, 480
ZraI GACGTC 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.