Rh2DG201700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008952
Physical Location & Seq
Forward (+)
18562962 .. 18566257
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG201700.1

Sequence Viewer

Length: 975 bp
ATGGGTCGATTCAGTCTTGTTCTGGTTTGGTCACTTTGCCTTTCTTTGTGCATGTTCTCTAAACCCACATCGGCGCAGTTGAAAACAAACTTCTACGCCAATATCTGCCCCAATGTCGAATCCATTGTCAAAAATGCTGTCACTAAGAAGTTCCAACAAACATTTGTGACGGTTCCCGCCACTATTCGTCTCTTTTTCCACGATTGCTTTGTCCAGGGTTGTGATGCTTCAGTAATAATTGCTTCAACAGGAAGCAATAAAGCAGAGAAAGACCACCCTGATAATCTGTCATTGGCCGGAGATGGGTTCGATACTGTGATCAAAGCAAAAGCAGCCGTTGATGCAGTTGCACAATGCAGAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCTACCAGAGACGCTATTGTTCTGTCTGGGGGGCCTTCATATCAAGTTGAATTGGGAAGATTGGATGGACTGAGCTCAACTTCTTCAAGTGTAAATGGGAAGCTTCCCCAGCCAACCTTCAATGTGAACCAGCTCAATTCCATGTTCAGTGCAAATGGGTTAACTCAGTCAGACATGGTTGCTCTTTCAGCGGCGCACACCGTCGGATTCTCTCATTGCAGCAAGTTCGCTAGTCGGATCGGAAACCCGGTGGACACCACGCTAAACAAAACCTATGCTGCAGAGCTGCAACAACAGTGTCCACAGAACGTTGACCCCGACATAGCCATCAACATGGACCCAAACACGCCCAGAACTTTTGACAATATGTACTACAAGAATCTTCAGCAGGGCAAAGGCTTGTTCACCTCCGATCAGGTCCTTTTCACTGACGCTAGAACCCGGCCCACTGTCAATACGTGGGCCTCAAACAATGCAGCTTTCCAACAAGCCTTTATTACTGCTATGACAAAGTTGGGCCGGGTCGGAGTCAAGACCGGCAATAATGGTAATATCCGTCGGGATTGTGCCGTTTTTAATTGA

Protein Analysis

324

Amino Acids

35.01

Weight (kDa)

8.78

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 288 1.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 177, 584
AclI AACGTT 1 cut(s) 702
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 213, 761
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 5 cut(s) 82, 246, 443, 480, 514
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 6 cut(s) 395, 468, 496, 526, 679, 872
AluI AGCT 6 cut(s) 395, 468, 496, 526, 679, 872
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 194, 373, 396
AlwI GGATC 1 cut(s) 638
AoxI GGCC 5 cut(s) 294, 425, 836, 855, 910
ApeKI GCWGC 5 cut(s) 332, 612, 671, 679, 869
ArsI GACNNNNNNTTYG 4 cut(s) 111, 123, 143, 155
AspLEI GCGC 2 cut(s) 76, 589
AspS9I GGNCC 6 cut(s) 425, 730, 811, 837, 855, 910
AsuC2I CCSGG 3 cut(s) 641, 835, 914
AsuHPI GGTGA 1 cut(s) 790
AvaII GGWCC 2 cut(s) 730, 811
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 5 cut(s) 344, 624, 658, 666, 881
BccI CCATC 3 cut(s) 296, 452, 728
BceAI ACGGC 2 cut(s) 320, 947
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 3 cut(s) 641, 835, 914
BcoDI GTCTC 3 cut(s) 194, 373, 396
BfaI CTAG 2 cut(s) 624, 828
BfmI CTRYAG 1 cut(s) 672
BisI GCNGC 6 cut(s) 333, 585, 613, 672, 680, 870
BlsI GCNGC 6 cut(s) 334, 586, 614, 673, 681, 871
Bme1390I CCNGG 4 cut(s) 215, 641, 835, 914
Bme18I GGWCC 2 cut(s) 730, 811
BmgT120I GGNCC 6 cut(s) 425, 730, 811, 837, 855, 910
BmiI GGNNCC 3 cut(s) 174, 426, 732
BmrFI CCNGG 4 cut(s) 215, 641, 835, 914
BmsI GCATC 2 cut(s) 214, 331
BpuMI CCSGG 3 cut(s) 641, 835, 914
BsaAI YACGTR 1 cut(s) 852
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 455, 572
BseXI GCAGC 5 cut(s) 344, 624, 658, 666, 881
BseYI CCCAGC 1 cut(s) 501
BshFI GGCC 5 cut(s) 296, 427, 838, 857, 912
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 5 cut(s) 297, 641, 835, 913, 930
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 3 cut(s) 194, 373, 396
BsmBI CGTCTC 2 cut(s) 194, 396
BsnI GGCC 5 cut(s) 296, 427, 838, 857, 912
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 318, 630, 805
BspACI CCGC 2 cut(s) 177, 584
BspANI GGCC 5 cut(s) 296, 427, 838, 857, 912
BspCNI CTCAG 2 cut(s) 456, 571
BspLI GGNNCC 3 cut(s) 174, 426, 732
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 929
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 318, 630, 805
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 5 cut(s) 172, 316, 595, 690, 844
BstBAI YACGTR 1 cut(s) 852
BstDEI CTNAG 3 cut(s) 144, 464, 558
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 2 cut(s) 76, 589
BstKTI GATC 3 cut(s) 321, 633, 808
BstMAI GTCTC 3 cut(s) 194, 373, 396
BstMBI GATC 3 cut(s) 318, 630, 805
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 4 cut(s) 213, 639, 833, 912
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 5 cut(s) 344, 624, 658, 666, 881
BstXI CCANNNNNNTGG 1 cut(s) 727
BsuRI GGCC 5 cut(s) 296, 427, 838, 857, 912
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 4 cut(s) 547, 695, 819, 840
CfoI GCGC 2 cut(s) 76, 589
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 6 cut(s) 425, 730, 811, 837, 855, 910
CseI GACGC 2 cut(s) 413, 833
Csp6I GTAC 1 cut(s) 763
CviAII CATG 4 cut(s) 52, 535, 568, 727
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 3 cut(s) 144, 464, 558
DpnI GATC 3 cut(s) 320, 632, 807
DpnII GATC 3 cut(s) 318, 630, 805
EaeI YGGCCR 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 730, 811
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 213, 761
EcoICRI GAGCTC 1 cut(s) 468
EcoO109I RGGNCCY 2 cut(s) 425, 811
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 470
Esp3I CGTCTC 2 cut(s) 194, 396
FaeI CATG 4 cut(s) 55, 538, 571, 730
FaiI YATR 9 cut(s) 53, 433, 536, 569, 669, 716, 728, 761, 899
FatI CATG 4 cut(s) 51, 534, 567, 726
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 333, 585, 613, 672, 680, 870
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 6 cut(s) 333, 585, 613, 672, 680, 870
FspBI CTAG 2 cut(s) 624, 828
GlaI GCGC 2 cut(s) 75, 588
GluI GCNGC 6 cut(s) 333, 585, 613, 672, 680, 870
GsaI CCCAGC 1 cut(s) 505
HaeIII GGCC 5 cut(s) 296, 427, 838, 857, 912
HapII CCGG 5 cut(s) 297, 641, 835, 913, 930
HgaI GACGC 2 cut(s) 413, 833
HhaI GCGC 2 cut(s) 76, 589
Hin1II CATG 4 cut(s) 55, 538, 571, 730
Hin6I GCGC 2 cut(s) 74, 587
HinP1I GCGC 2 cut(s) 74, 587
HincII GTYRAC 2 cut(s) 555, 706
HindII GTYRAC 2 cut(s) 555, 706
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 5 cut(s) 9, 119, 600, 772, 921
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 5 cut(s) 297, 641, 835, 913, 930
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 6 cut(s) 520, 555, 646, 695, 706, 798
Hpy188I TCNGA 6 cut(s) 565, 599, 630, 635, 805, 920
Hpy188III TCNNGA 2 cut(s) 925, 953
Hpy8I GTNNAC 6 cut(s) 520, 555, 646, 695, 706, 798
Hpy99I CGWCG 2 cut(s) 599, 954
HpyAV CCTTC 2 cut(s) 438, 520
HpyCH4III ACNGT 5 cut(s) 172, 316, 595, 690, 844
HpyCH4IV ACGT 2 cut(s) 702, 851
HpyCH4V TGCA 9 cut(s) 51, 344, 350, 357, 545, 612, 674, 682, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
HpyF3I CTNAG 3 cut(s) 144, 464, 558
HpySE526I ACGT 2 cut(s) 702, 851
Hsp92II CATG 4 cut(s) 55, 538, 571, 730
HspAI GCGC 2 cut(s) 74, 587
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 318, 630, 805
Lsp1109I GCAGC 5 cut(s) 344, 624, 658, 666, 881
LweI GCATC 2 cut(s) 214, 331
MaeI CTAG 2 cut(s) 624, 828
MaeII ACGT 2 cut(s) 702, 851
MaeIII GTNAC 3 cut(s) 30, 139, 166
MalI GATC 3 cut(s) 320, 632, 807
MboI GATC 3 cut(s) 318, 630, 805
MboII GAAGA 3 cut(s) 462, 468, 767
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 4 cut(s) 237, 443, 529, 970
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 5 cut(s) 178, 577, 608, 898, 901
MnlI CCTC 2 cut(s) 811, 868
MseI TTAA 2 cut(s) 554, 969
MslI CAYNNNNRTG 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 5 cut(s) 297, 641, 835, 913, 930
MspR9I CCNGG 4 cut(s) 215, 641, 835, 914
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 502, 581
NciI CCSGG 3 cut(s) 641, 835, 914
NdeII GATC 3 cut(s) 318, 630, 805
NlaIII CATG 4 cut(s) 55, 538, 571, 730
NlaIV GGNNCC 3 cut(s) 174, 426, 732
NmuCI GTSAC 3 cut(s) 30, 139, 166
NspI RCATGY 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PfeI GAWTC 4 cut(s) 9, 119, 600, 772
PkrI GCNGC 6 cut(s) 334, 586, 614, 673, 681, 871
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
Ppu21I YACGTR 1 cut(s) 852
PpuMI RGGWCCY 1 cut(s) 811
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 174, 426, 732
PspPI GGNCC 6 cut(s) 425, 730, 811, 837, 855, 910
PspPPI RGGWCCY 1 cut(s) 811
PstI CTGCAG 1 cut(s) 676
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 1 cut(s) 725
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 2 cut(s) 554, 969
SatI GCNGC 6 cut(s) 333, 585, 613, 672, 680, 870
Sau3AI GATC 3 cut(s) 318, 630, 805
Sau96I GGNCC 6 cut(s) 425, 730, 811, 837, 855, 910
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 4 cut(s) 215, 641, 835, 914
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 2 cut(s) 214, 331
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 2 cut(s) 730, 811
SmiMI CAYNNNNRTG 1 cut(s) 725
Sse9I AATT 4 cut(s) 237, 443, 529, 970
SsiI CCGC 2 cut(s) 177, 584
SspMI CTAG 2 cut(s) 624, 828
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 4 cut(s) 213, 639, 833, 912
TaaI ACNGT 5 cut(s) 172, 316, 595, 690, 844
TaiI ACGT 2 cut(s) 705, 854
TaqI TCGA 3 cut(s) 7, 117, 309
TasI AATT 4 cut(s) 237, 443, 529, 970
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 4 cut(s) 9, 119, 600, 772
Tru1I TTAA 2 cut(s) 554, 969
Tru9I TTAA 2 cut(s) 554, 969
TscAI CASTG 4 cut(s) 547, 695, 826, 847
TseFI GTSAC 3 cut(s) 30, 139, 166
TseI GCWGC 5 cut(s) 332, 612, 671, 679, 869
Tsp45I GTSAC 3 cut(s) 30, 139, 166
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 4 cut(s) 547, 695, 826, 847
VpaK11BI GGWCC 2 cut(s) 730, 811
XceI RCATGY 1 cut(s) 55
XspI CTAG 2 cut(s) 624, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.