pycom15g25710

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008952
Physical Location & Seq
Forward (+)
20292153 .. 20294359
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g25710.3

Sequence Viewer

Length: 1131 bp
ATGAATGCTTTCTTCAATCCAACTGGCGCATATCTCATGACTCATGCGCCCTCTTCTTTTTATATATTCCTCCACCCTTGGCAATCAAAATCTCAGTCTTCTTCTTCTCTCTCTTCCTATCTGTGTTCTGAAAAAAATCAAATGTTTGGTCGCATGGGTCGCTTCAATCTTTTACTAGTTTGGTCGCTTCGCCTCAGTTTGTGTCTACTTTTTTGTCCCACATCGGCGCAGCTCAAAACAAATTACTATGCCAACATCTGCCCCGACGTAGAAAAAATTGTTAAAAATGCTGTCACTAATAAATTCCAGCGAACATTCGTCACTGTTCCGGCAACACTCCGTCTCTTTTTCCACGATTGCTTTGTCCAGGGATGTGATGCTTCCGTTATAGTTGCTTCCACTGCAAACAACAAGGCAGAAAAGGACCATCCTGATAATCTATCATTAGCCGGAGATGGGTTTGATACGGTGATCAAAGCCAAAGCAGCCGTTGATGCAGTTCCTCAATGCAAAAACAAAGTTTCATGCGCTGATATTCTTGCCTTGGCCACCAGAGATGTTATTGGTTTGGTTGGTGGACCTTCATATTCGGTTGAGTTGGGAAGATTGGATGGTCTAACGTCAACTTCTACAAGTGTAGATGGGAAGCTGCCTAAGCCAACATTCAATTTGAACCAGCTCACTTCCATGTTTGCTTCCAATGGGTTGTCCCAGGCTGACATGGTTGCTCTTTCAGGGGCACACACCCTAGGGTTCGCTCATTGCAACCAGTTCTCAAATCGGATTTACAGTAATCCAGTGGACCCCACGCTGAACGAAACGTATGCAACGCAGCTCCAACAAATGTGTCCCAAAAATGTGGACCCCGACATAGCCATCAACATGGACCCAACCACGCCCAGGGAGTTTGACAATGCATACTTTGAGAATCTTATAGAAGGGAAGGGGTTATTTACCTCGGACCAGGTCCTTTTTACGGACAGCAGGTCCCAGCCCACGGTAAGAACATGGGCCAAAGATAAGACGGCTTTTAACCAGGCCTTTATTAACGCTATGACCAAGCTGGGTCGGGTCGGAATCAAGACCGGCCATAATGGCAATATTCGTCGTGATTGCGGTATTTTAAATTGA

Protein Analysis

377

Amino Acids

41.24

Weight (kDa)

8.42

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 975
AccI GTMKAC 1 cut(s) 205
AciI CCGC 1 cut(s) 1116
AcoI YGGCCR 2 cut(s) 546, 1087
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
AgsI TTSAA 4 cut(s) 16, 166, 667, 673
AhdI GACNNNNNGTC 1 cut(s) 985
AhlI ACTAGT 1 cut(s) 175
AjnI CCWGG 5 cut(s) 366, 711, 899, 963, 1035
AluBI AGCT 5 cut(s) 232, 649, 679, 835, 1063
AluI AGCT 5 cut(s) 232, 649, 679, 835, 1063
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 4 cut(s) 546, 1011, 1038, 1087
ApeKI GCWGC 4 cut(s) 229, 485, 649, 832
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 133, 165
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 748
AspLEI GCGC 4 cut(s) 29, 49, 229, 530
AspS9I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
AvrII CCTAGG 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 742
BalI TGGCCA 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 241, 497, 636, 844
BccI CCATC 5 cut(s) 435, 449, 605, 635, 884
BceAI ACGGC 2 cut(s) 473, 1041
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 175
BfaI CTAG 2 cut(s) 176, 749
BfuAI ACCTGC 1 cut(s) 975
BglI GCCNNNNNGGC 1 cut(s) 1095
BisI GCNGC 4 cut(s) 230, 486, 650, 833
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 4 cut(s) 231, 487, 651, 834
Bme1390I CCNGG 5 cut(s) 368, 713, 901, 965, 1037
Bme18I GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
BmeRI GACNNNNNGTC 1 cut(s) 985
BmgT120I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
BmiI GGNNCC 4 cut(s) 804, 864, 888, 989
BmrFI CCNGG 5 cut(s) 368, 713, 901, 965, 1037
BmsI GCATC 2 cut(s) 367, 484
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 654
BsaJI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
Bsc4I CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 3 cut(s) 28, 769, 797
Bse3DI GCAATG 1 cut(s) 760
BseBI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BseDI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
BseGI GGATG 3 cut(s) 377, 427, 616
BseLI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 2 cut(s) 107, 208
BseNI ACTGG 3 cut(s) 28, 769, 797
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 241, 497, 636, 844
BseYI CCCAGC 2 cut(s) 990, 1063
BshFI GGCC 4 cut(s) 548, 1013, 1040, 1089
BsiSI CCGG 3 cut(s) 329, 450, 1086
BslFI GGGAC 4 cut(s) 201, 694, 834, 973
BslI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 4 cut(s) 201, 694, 834, 973
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 548, 1013, 1040, 1089
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 1 cut(s) 471
BspACI CCGC 1 cut(s) 1116
BspANI GGCC 4 cut(s) 548, 1013, 1040, 1089
BspCNI CTCAG 2 cut(s) 106, 207
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 804, 864, 888, 989
BspMI ACCTGC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 3 cut(s) 28, 769, 797
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
BssMI GATC 1 cut(s) 471
BssT1I CCWWGG 3 cut(s) 77, 543, 748
Bst2UI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
Bst4CI ACNGT 4 cut(s) 325, 469, 791, 1000
Bst6I CTCTTC 2 cut(s) 58, 118
BstDEI CTNAG 3 cut(s) 93, 194, 654
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 3 cut(s) 377, 427, 616
BstHHI GCGC 4 cut(s) 29, 49, 229, 530
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
BstNI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BstSCI CCNGG 5 cut(s) 366, 711, 899, 963, 1035
BstSLI GKGCMC 1 cut(s) 742
BstV1I GCAGC 4 cut(s) 241, 497, 636, 844
BstV2I GAAGAC 1 cut(s) 90
BstXI CCANNNNNNTGG 2 cut(s) 859, 883
BsuRI GGCC 4 cut(s) 548, 1013, 1040, 1089
BtgI CCRYGG 1 cut(s) 996
BtsCI GGATG 3 cut(s) 377, 427, 616
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 321, 399, 804
BveI ACCTGC 1 cut(s) 975
CciI TCATGA 1 cut(s) 36
CfoI GCGC 4 cut(s) 29, 49, 229, 530
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
CsiI ACCWGGT 1 cut(s) 963
CviAII CATG 8 cut(s) 37, 44, 154, 525, 688, 721, 883, 1008
DdeI CTNAG 3 cut(s) 93, 194, 654
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
DraI TTTAAA 1 cut(s) 1125
DriI GACNNNNNGTC 1 cut(s) 985
EaeI YGGCCR 2 cut(s) 546, 1087
Eam1104I CTCTTC 2 cut(s) 58, 118
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 2 cut(s) 58, 118
Eco130I CCWWGG 3 cut(s) 77, 543, 748
Eco147I AGGCCT 1 cut(s) 1040
Eco47I GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
EcoO109I RGGNCCY 2 cut(s) 967, 987
EcoRII CCWGG 5 cut(s) 366, 711, 899, 963, 1035
EcoT14I CCWWGG 3 cut(s) 77, 543, 748
EcoT22I ATGCAT 1 cut(s) 919
ErhI CCWWGG 3 cut(s) 77, 543, 748
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
FaqI GGGAC 4 cut(s) 201, 694, 834, 973
FatI CATG 8 cut(s) 36, 43, 153, 524, 687, 720, 882, 1007
FbaI TGATCA 1 cut(s) 471
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 230, 486, 650, 833
FokI GGATG 3 cut(s) 384, 414, 623
Fsp4HI GCNGC 4 cut(s) 230, 486, 650, 833
FspBI CTAG 2 cut(s) 176, 749
GlaI GCGC 4 cut(s) 28, 48, 228, 529
GluI GCNGC 4 cut(s) 230, 486, 650, 833
GsaI CCCAGC 2 cut(s) 994, 1067
HaeIII GGCC 4 cut(s) 548, 1013, 1040, 1089
HapII CCGG 3 cut(s) 329, 450, 1086
HhaI GCGC 4 cut(s) 29, 49, 229, 530
Hin1II CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
Hin6I GCGC 4 cut(s) 27, 47, 227, 528
HinP1I GCGC 4 cut(s) 27, 47, 227, 528
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 3 cut(s) 40, 928, 1077
HpaII CCGG 3 cut(s) 329, 450, 1086
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 5 cut(s) 206, 578, 624, 802, 862
Hpy188I TCNGA 4 cut(s) 130, 783, 961, 1076
Hpy188III TCNNGA 4 cut(s) 37, 431, 1081, 1109
Hpy8I GTNNAC 5 cut(s) 206, 578, 624, 802, 862
Hpy99I CGWCG 2 cut(s) 269, 1110
HpyAV CCTTC 3 cut(s) 591, 932, 937
HpyCH4III ACNGT 4 cut(s) 325, 469, 791, 1000
HpyCH4IV ACGT 3 cut(s) 267, 620, 821
HpyCH4V TGCA 6 cut(s) 404, 497, 510, 765, 827, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
HpyF3I CTNAG 3 cut(s) 93, 194, 654
HpySE526I ACGT 3 cut(s) 267, 620, 821
Hsp92II CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
HspAI GCGC 4 cut(s) 27, 47, 227, 528
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 4 cut(s) 241, 497, 636, 844
LweI GCATC 2 cut(s) 367, 484
MabI ACCWGGT 1 cut(s) 963
MaeI CTAG 2 cut(s) 176, 749
MaeII ACGT 3 cut(s) 267, 620, 821
MaeIII GTNAC 2 cut(s) 292, 319
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 7 cut(s) 4, 45, 90, 93, 96, 105, 615
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 5 cut(s) 241, 276, 302, 667, 1126
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 3 cut(s) 44, 862, 1054
MnlI CCTC 5 cut(s) 61, 80, 203, 513, 967
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 548
MseI TTAA 4 cut(s) 282, 1032, 1047, 1124
MslI CAYNNNNRTG 2 cut(s) 686, 881
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 3 cut(s) 329, 450, 1086
MspR9I CCNGG 5 cut(s) 368, 713, 901, 965, 1037
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
MwoI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
NdeII GATC 1 cut(s) 471
NlaIII CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
NlaIV GGNNCC 4 cut(s) 804, 864, 888, 989
NmuCI GTSAC 2 cut(s) 292, 319
NsiI ATGCAT 1 cut(s) 919
PagI TCATGA 1 cut(s) 36
PasI CCCWGGG 1 cut(s) 900
PceI AGGCCT 1 cut(s) 1040
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 928, 1077
PflFI GACNNNGTC 1 cut(s) 965
PkrI GCNGC 4 cut(s) 231, 487, 651, 834
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 2 cut(s) 967, 987
Psp5II RGGWCCY 2 cut(s) 967, 987
Psp6I CCWGG 5 cut(s) 366, 711, 899, 963, 1035
PspFI CCCAGC 2 cut(s) 990, 1063
PspGI CCWGG 5 cut(s) 366, 711, 899, 963, 1035
PspN4I GGNNCC 4 cut(s) 804, 864, 888, 989
PspPI GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
PspPPI RGGWCCY 2 cut(s) 967, 987
PsyI GACNNNGTC 1 cut(s) 965
RseI CAYNNNNRTG 2 cut(s) 686, 881
SaqAI TTAA 4 cut(s) 282, 1032, 1047, 1124
SatI GCNGC 4 cut(s) 230, 486, 650, 833
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 5 cut(s) 368, 713, 901, 965, 1037
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 963
SfaNI GCATC 2 cut(s) 367, 484
SinI GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
SmiMI CAYNNNNRTG 2 cut(s) 686, 881
SpeI ACTAGT 1 cut(s) 175
Sse9I AATT 5 cut(s) 241, 276, 302, 667, 1126
SseBI AGGCCT 1 cut(s) 1040
SsiI CCGC 1 cut(s) 1116
SspI AATATT 1 cut(s) 1102
SspMI CTAG 2 cut(s) 176, 749
StuI AGGCCT 1 cut(s) 1040
StyD4I CCNGG 5 cut(s) 366, 711, 899, 963, 1035
StyI CCWWGG 3 cut(s) 77, 543, 748
TaaI ACNGT 4 cut(s) 325, 469, 791, 1000
TaiI ACGT 3 cut(s) 270, 623, 824
TasI AATT 5 cut(s) 241, 276, 302, 667, 1126
TfiI GAWTC 2 cut(s) 928, 1077
Tru1I TTAA 4 cut(s) 282, 1032, 1047, 1124
Tru9I TTAA 4 cut(s) 282, 1032, 1047, 1124
TscAI CASTG 3 cut(s) 328, 406, 804
TseFI GTSAC 2 cut(s) 292, 319
TseI GCWGC 4 cut(s) 229, 485, 649, 832
Tsp45I GTSAC 2 cut(s) 292, 319
TspDTI ATGAA 3 cut(s) 17, 513, 573
TspGWI ACGGA 3 cut(s) 329, 373, 992
TspRI CASTG 3 cut(s) 328, 406, 804
Tth111I GACNNNGTC 1 cut(s) 965
VpaK11BI GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
XapI RAATTY 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 748
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 176, 749
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.