AT3G50130

BEST Arabidopsis thaliana protein match is Plant protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004633
Physical Location & Seq
Reverse (-)
18588981 .. 18591273
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50130.1

Sequence Viewer

Length: 1695 bp
ATGGTGCGTATTCTTTCTTTTACACCACCGCCTCCTCCACCACCACCACCATCGTTTAGATCAATTCCTCGTCCACCACCACCACCATCTTTTAGATCAATTCCTCCTCGGCGGCATTTCTTCAAAAAGAAAAGCAAAAGTCTACCACCACCACCACCACCGCTACCGCCAGCACGACCATTTGGACCGATTCTTCCTTGGCGGTATTCTGTCAAAAGAAAAAGAACTAATCGACCACAACCGTCTACGATCCAGAAAGACATGTTCACATGGTACTTTCTCACCCTCATGATGCGCCAAAAACTCCAAAAACAAAACCAAAAACCCGAAGAGACACGAGAAGAATGGGTGATCTCAATTAGAGACAAAATGGAGCAAGCACTTAGAGAAGACGCCACAACTAGTTGGGACAAACTATGTATCTATAGAGTTCCACAATACCTTCAAGAGAACAACAAGAAGTCCTATTTCCCTCAGACTGTCTCACTTGGTCCGTTCCACCATGGCAACAAACATCTCCTACCCATGGACCGTCACAAGTGGCGTGCAGTCAATATGGTCATGGCACGTACCAAACACGACATTGAAATGTATATTGACGCCATGAAAGAACTCGAAGACAGGGCTCGTGCTTGCTATGAAGGTCCTATAGATTTGAGCAGCAACAAGTTTAGTGAAATGCTGGTTCTTGATGGTTGTTTCGTTCTTGAACTCTTTAGAGGAGCTGATGAAGGATTCTCCGAACTAGGATATGATCGTAACGATCCAGTTTTCGCAATGCGAGGATCAATGCATTCGATTCAACGTGACATGGTAATGCTAGAAAATCAACTCCCTTTGTTTGTTCTCAACCGGTTATTAGAGATACAGCTTGGTAAACGGCACCAAACCGGTTTAGTGTCGCGATTAGCAGTTCGGTTCTTTGATCCACTAATGCCAACCGACGAGCCGTTGACCAAAACCGACGACTCGCTGGAACAAGATAAATTCTTTAACCCAATTGCTGATAAGGACAAGGGTGAGTTGCACTGTCTAGATGTTTTCCGTCGAAATCTACTTCGGCCTTGTTCGAATCCGGAGCCAAGGTTATCACGAATGAGATGGTCATGGAGAACTCGCGTGGCGGATAAGCGCCAACAACAACTGATACATTGCGTGACCGAACTAAGAGAAGCCGGTATTAAATTCAGGACGAGGAAAACCGACCGGTTTTGGGATATTCGATTCAAAAACGGTTATCTCGAGATACCAAAACTACTAATCCATGACGGTACCAAATCTCTCTTCTCGAATCTTATAGCCTTCGAACAATGTCATATTGACTCGAGCAACGATATAACATCGTACATAATCTTTATGGATAATCTAATAGATTCGTCGGAAGATGTTAGGTATTTGCATTATTGTGGTATCATCGAACATTGGTTAGGGAATGATTATGAAGTTGCGGATTTGTTCAACCGGTTATGTCAAGAAGTGGCTTTCGACCCCCAAAATAGTTATTTGTCACAATTGTCGAATAAAGTTGATCGGAATTATAGCCGAAAGTGGAATGTTCTGAAGGCGATCTTAAAACACAAGTACTTCAATAATCCTTGGGCATACTTCTCTTTTTTTGCTGCTCTTGTCCTGCTAGTTCTCACGTTATTTCAGAGTTTCTTTACTGCTTATCCTTATTTTAACCCACCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

564

Amino Acids

66.6

Weight (kDa)

9.38

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 141 - 547 3.4e-133 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1271
AccB1I GGYRCC 2 cut(s) 882, 1271
AccI GTMKAC 2 cut(s) 142, 245
AccII CGCG 2 cut(s) 904, 1119
AccIII TCCGGA 1 cut(s) 1075
AciI CCGC 7 cut(s) 29, 112, 161, 167, 202, 1124, 1448
AclWI GGATC 4 cut(s) 244, 758, 793, 920
AcsI RAATTY 2 cut(s) 986, 1184
AcuI CTGAAG 1 cut(s) 1580
AcyI GRCGYC 2 cut(s) 393, 600
AfaI GTAC 5 cut(s) 275, 571, 1273, 1346, 1583
AfiI CCNNNNNNNGG 2 cut(s) 526, 1213
AflIII ACRYGT 1 cut(s) 261
AgeI ACCGGT 4 cut(s) 852, 890, 1206, 1461
AgsI TTSAA 8 cut(s) 124, 446, 587, 710, 803, 1228, 1459, 1588
AhlI ACTAGT 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AluBI AGCT 2 cut(s) 725, 871
AluI AGCT 2 cut(s) 725, 871
Alw26I GTCTC 3 cut(s) 326, 357, 487
AlwI GGATC 4 cut(s) 244, 758, 793, 920
Ama87I CYCGRG 2 cut(s) 1241, 1324
Aor13HI TCCGGA 1 cut(s) 1075
AoxI GGCC 1 cut(s) 1061
ApeKI GCWGC 2 cut(s) 660, 1619
ApoI RAATTY 2 cut(s) 986, 1184
AsiGI ACCGGT 4 cut(s) 852, 890, 1206, 1461
Asp718I GGTACC 1 cut(s) 1271
AspLEI GCGC 2 cut(s) 297, 1134
AspS9I GGNCC 4 cut(s) 185, 491, 529, 644
AsuHPI GGTGA 3 cut(s) 274, 361, 1031
AsuII TTCGAA 2 cut(s) 1070, 1305
AvaI CYCGRG 2 cut(s) 1241, 1324
AvaII GGWCC 4 cut(s) 185, 491, 529, 644
BanI GGYRCC 2 cut(s) 882, 1271
BanII GRGCYC 1 cut(s) 628
BauI CACGAG 2 cut(s) 336, 627
BbsI GAAGAC 2 cut(s) 396, 624
BbvI GCAGC 2 cut(s) 672, 1606
BccI CCATC 4 cut(s) 58, 94, 686, 1095
BceAI ACGGC 2 cut(s) 896, 934
BcoDI GTCTC 3 cut(s) 326, 357, 487
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 5 cut(s) 402, 746, 821, 1034, 1634
BfmI CTRYAG 2 cut(s) 424, 648
BfoI RGCGCY 1 cut(s) 1135
BisI GCNGC 3 cut(s) 113, 661, 1620
BlsI GCNGC 3 cut(s) 114, 662, 1621
BmcAI AGTACT 1 cut(s) 1583
Bme18I GGWCC 4 cut(s) 185, 491, 529, 644
BmeT110I CYCGRG 2 cut(s) 1241, 1324
BmgT120I GGNCC 4 cut(s) 185, 491, 529, 644
BmiI GGNNCC 3 cut(s) 884, 1080, 1273
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 2 cut(s) 396, 624
Bpu14I TTCGAA 2 cut(s) 1070, 1305
BsaAI YACGTR 1 cut(s) 569
BsaHI GRCGYC 2 cut(s) 393, 600
BsaJI CCNNGG 6 cut(s) 107, 197, 502, 525, 1082, 1595
BsaWI WCCGGW 5 cut(s) 852, 890, 1075, 1206, 1461
BsaXI ACNNNNNCTCC 2 cut(s) 1070, 1100
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 1213
Bse118I RCCGGY 5 cut(s) 852, 890, 1175, 1206, 1461
Bse1I ACTGG 1 cut(s) 767
Bse3DI GCAATG 2 cut(s) 783, 1150
BseAI TCCGGA 1 cut(s) 1075
BseDI CCNNGG 6 cut(s) 107, 197, 502, 525, 1082, 1595
BseLI CCNNNNNNNGG 2 cut(s) 526, 1213
BseMI GCAATG 2 cut(s) 783, 1150
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 3 cut(s) 24, 96, 735
BseXI GCAGC 2 cut(s) 672, 1606
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 904, 1119
Bsh1285I CGRYCG 1 cut(s) 1207
BshFI GGCC 1 cut(s) 1063
BshNI GGYRCC 2 cut(s) 882, 1271
BshTI ACCGGT 4 cut(s) 852, 890, 1206, 1461
BsiEI CGRYCG 1 cut(s) 1207
BsiHKCI CYCGRG 2 cut(s) 1241, 1324
BsiSI CCGG 6 cut(s) 853, 891, 1076, 1176, 1207, 1462
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 526, 1213
BsmAI GTCTC 3 cut(s) 326, 357, 487
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 1 cut(s) 1063
BsoBI CYCGRG 2 cut(s) 1241, 1324
Bsp119I TTCGAA 2 cut(s) 1070, 1305
Bsp1286I GDGCHC 1 cut(s) 628
Bsp13I TCCGGA 1 cut(s) 1075
Bsp19I CCATGG 2 cut(s) 502, 525
Bsp68I TCGCGA 1 cut(s) 904
BspACI CCGC 7 cut(s) 29, 112, 161, 167, 202, 1124, 1448
BspANI GGCC 1 cut(s) 1063
BspCNI CTCAG 1 cut(s) 487
BspEI TCCGGA 1 cut(s) 1075
BspFNI CGCG 2 cut(s) 904, 1119
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 884, 1080, 1273
BspPI GGATC 4 cut(s) 244, 758, 793, 920
BspT104I TTCGAA 2 cut(s) 1070, 1305
BspT107I GGYRCC 2 cut(s) 882, 1271
BsrDI GCAATG 2 cut(s) 783, 1150
BsrFI RCCGGY 5 cut(s) 852, 890, 1175, 1206, 1461
BsrI ACTGG 1 cut(s) 767
BssAI RCCGGY 5 cut(s) 852, 890, 1175, 1206, 1461
BssECI CCNNGG 6 cut(s) 107, 197, 502, 525, 1082, 1595
BssNI GRCGYC 2 cut(s) 393, 600
BssSI CACGAG 2 cut(s) 336, 627
BssT1I CCWWGG 5 cut(s) 197, 502, 525, 1082, 1595
Bst2BI CACGAG 2 cut(s) 336, 627
Bst4CI ACNGT 6 cut(s) 243, 481, 533, 1031, 1235, 1271
Bst6I CTCTTC 2 cut(s) 324, 1289
BstACI GRCGYC 2 cut(s) 393, 600
BstBAI YACGTR 1 cut(s) 569
BstBI TTCGAA 2 cut(s) 1070, 1305
BstC8I GCNNGC 4 cut(s) 171, 378, 546, 634
BstDEI CTNAG 3 cut(s) 383, 474, 1166
BstDSI CCRYGG 2 cut(s) 502, 525
BstFNI CGCG 2 cut(s) 904, 1119
BstH2I RGCGCY 1 cut(s) 1135
BstHHI GCGC 2 cut(s) 297, 1134
BstMAI GTCTC 3 cut(s) 326, 357, 487
BstMCI CGRYCG 1 cut(s) 1207
BstNSI RCATGY 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 424, 648
BstUI CGCG 2 cut(s) 904, 1119
BstV1I GCAGC 2 cut(s) 672, 1606
BstV2I GAAGAC 2 cut(s) 396, 624
BsuRI GGCC 1 cut(s) 1063
BtgI CCRYGG 2 cut(s) 502, 525
BtsIMutI CAGTG 1 cut(s) 1027
BtuMI TCGCGA 1 cut(s) 904
Cac8I GCNNGC 4 cut(s) 171, 378, 546, 634
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 297, 1134
Cfr10I RCCGGY 5 cut(s) 852, 890, 1175, 1206, 1461
Cfr13I GGNCC 4 cut(s) 185, 491, 529, 644
CseI GACGC 2 cut(s) 401, 608
Csp6I GTAC 5 cut(s) 274, 570, 1272, 1345, 1582
CspAI ACCGGT 4 cut(s) 852, 890, 1206, 1461
CviQI GTAC 5 cut(s) 274, 570, 1272, 1345, 1582
DdeI CTNAG 3 cut(s) 383, 474, 1166
Eam1104I CTCTTC 2 cut(s) 324, 1289
EarI CTCTTC 2 cut(s) 324, 1289
EciI GGCGGA 1 cut(s) 1139
Eco130I CCWWGG 5 cut(s) 197, 502, 525, 1082, 1595
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 4 cut(s) 185, 491, 529, 644
Eco57I CTGAAG 1 cut(s) 1580
Eco88I CYCGRG 2 cut(s) 1241, 1324
EcoO109I RGGNCCY 1 cut(s) 644
EcoT14I CCWWGG 5 cut(s) 197, 502, 525, 1082, 1595
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 5 cut(s) 197, 502, 525, 1082, 1595
FalI AAGNNNNNCTT 2 cut(s) 1553, 1585
FaqI GGGAC 1 cut(s) 422
FblI GTMKAC 2 cut(s) 142, 245
Fnu4HI GCNGC 3 cut(s) 113, 661, 1620
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 3 cut(s) 113, 661, 1620
FspBI CTAG 5 cut(s) 402, 746, 821, 1034, 1634
GlaI GCGC 2 cut(s) 296, 1133
GluI GCNGC 3 cut(s) 113, 661, 1620
HaeII RGCGCY 1 cut(s) 1135
HaeIII GGCC 1 cut(s) 1063
HapII CCGG 6 cut(s) 853, 891, 1076, 1176, 1207, 1462
HgaI GACGC 2 cut(s) 401, 608
HhaI GCGC 2 cut(s) 297, 1134
Hin1I GRCGYC 2 cut(s) 393, 600
Hin6I GCGC 2 cut(s) 295, 1132
HinP1I GCGC 2 cut(s) 295, 1132
HincII GTYRAC 1 cut(s) 954
HindII GTYRAC 1 cut(s) 954
HinfI GANTC 9 cut(s) 190, 735, 799, 968, 1072, 1224, 1291, 1322, 1373
HpaII CCGG 6 cut(s) 853, 891, 1076, 1176, 1207, 1462
HphI GGTGA 3 cut(s) 274, 361, 1031
Hpy166II GTNNAC 6 cut(s) 74, 143, 246, 267, 878, 954
Hpy188I TCNGA 6 cut(s) 477, 742, 1381, 1533, 1560, 1653
Hpy8I GTNNAC 6 cut(s) 74, 143, 246, 267, 878, 954
Hpy99I CGWCG 4 cut(s) 947, 968, 1050, 1381
HpyAV CCTTC 5 cut(s) 452, 635, 725, 1312, 1555
HpyCH4III ACNGT 6 cut(s) 243, 481, 533, 1031, 1235, 1271
HpyCH4IV ACGT 3 cut(s) 568, 805, 1643
HpyCH4V TGCA 4 cut(s) 548, 793, 1027, 1399
HpyF3I CTNAG 3 cut(s) 383, 474, 1166
HpySE526I ACGT 3 cut(s) 568, 805, 1643
Hsp92I GRCGYC 2 cut(s) 393, 600
HspAI GCGC 2 cut(s) 295, 1132
Kpn2I TCCGGA 1 cut(s) 1075
KpnI GGTACC 1 cut(s) 1275
LmnI GCTCC 3 cut(s) 373, 722, 1078
Lsp1109I GCAGC 2 cut(s) 672, 1606
LweI GCATC 1 cut(s) 282
MaeI CTAG 5 cut(s) 402, 746, 821, 1034, 1634
MaeII ACGT 3 cut(s) 568, 805, 1643
MaeIII GTNAC 5 cut(s) 533, 758, 806, 1156, 1506
MboII GAAGA 8 cut(s) 112, 185, 341, 353, 401, 629, 1276, 1394
MfeI CAATTG 2 cut(s) 999, 1511
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 8 cut(s) 63, 99, 357, 986, 999, 1184, 1511, 1534
MlyI GAGTC 2 cut(s) 962, 1316
MmeI TCCRAC 1 cut(s) 1359
Mph1103I ATGCAT 1 cut(s) 795
MroI TCCGGA 1 cut(s) 1075
MseI TTAA 4 cut(s) 993, 1182, 1571, 1680
MslI CAYNNNNRTG 4 cut(s) 287, 587, 815, 1404
MspI CCGG 6 cut(s) 853, 891, 1076, 1176, 1207, 1462
MunI CAATTG 2 cut(s) 999, 1511
Mva1269I GAATGC 1 cut(s) 793
MvnI CGCG 2 cut(s) 904, 1119
NcoI CCATGG 2 cut(s) 502, 525
NlaIV GGNNCC 3 cut(s) 884, 1080, 1273
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 4 cut(s) 533, 806, 1156, 1506
NruI TCGCGA 1 cut(s) 904
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 1 cut(s) 265
NspV TTCGAA 2 cut(s) 1070, 1305
PaeR7I CTCGAG 2 cut(s) 1241, 1324
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 1239
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 7 cut(s) 190, 735, 799, 1072, 1224, 1291, 1373
PinAI ACCGGT 4 cut(s) 852, 890, 1206, 1461
PkrI GCNGC 3 cut(s) 114, 662, 1621
PleI GAGTC 2 cut(s) 962, 1316
PpsI GAGTC 2 cut(s) 962, 1316
Ppu21I YACGTR 1 cut(s) 569
PpuMI RGGWCCY 1 cut(s) 644
PscI ACATGT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 884, 1080, 1273
PspPI GGNCC 4 cut(s) 185, 491, 529, 644
PspPPI RGGWCCY 1 cut(s) 644
PspXI VCTCGAGB 1 cut(s) 1324
RruI TCGCGA 1 cut(s) 904
RsaI GTAC 5 cut(s) 275, 571, 1273, 1346, 1583
RsaNI GTAC 5 cut(s) 274, 570, 1272, 1345, 1582
RseI CAYNNNNRTG 4 cut(s) 287, 587, 815, 1404
SaqAI TTAA 4 cut(s) 993, 1182, 1571, 1680
SatI GCNGC 3 cut(s) 113, 661, 1620
Sau96I GGNCC 4 cut(s) 185, 491, 529, 644
ScaI AGTACT 1 cut(s) 1583
SchI GAGTC 2 cut(s) 962, 1316
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 2 cut(s) 424, 648
Sfr274I CTCGAG 2 cut(s) 1241, 1324
SfuI TTCGAA 2 cut(s) 1070, 1305
SinI GGWCC 4 cut(s) 185, 491, 529, 644
SlaI CTCGAG 2 cut(s) 1241, 1324
SmiMI CAYNNNNRTG 4 cut(s) 287, 587, 815, 1404
SmlI CTYRAG 2 cut(s) 1241, 1324
SmoI CTYRAG 2 cut(s) 1241, 1324
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 8 cut(s) 63, 99, 357, 986, 999, 1184, 1511, 1534
SsiI CCGC 7 cut(s) 29, 112, 161, 167, 202, 1124, 1448
SspMI CTAG 5 cut(s) 402, 746, 821, 1034, 1634
StyI CCWWGG 5 cut(s) 197, 502, 525, 1082, 1595
TaaI ACNGT 6 cut(s) 243, 481, 533, 1031, 1235, 1271
TaiI ACGT 3 cut(s) 571, 808, 1646
TaqII GACCGA 2 cut(s) 202, 1175
TasI AATT 8 cut(s) 63, 99, 357, 986, 999, 1184, 1511, 1534
TatI WGTACW 1 cut(s) 1581
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 7 cut(s) 190, 735, 799, 1072, 1224, 1291, 1373
Tru1I TTAA 4 cut(s) 993, 1182, 1571, 1680
Tru9I TTAA 4 cut(s) 993, 1182, 1571, 1680
TscAI CASTG 1 cut(s) 1034
TseFI GTSAC 4 cut(s) 533, 806, 1156, 1506
TseI GCWGC 2 cut(s) 660, 1619
Tsp45I GTSAC 4 cut(s) 533, 806, 1156, 1506
TspDTI ATGAA 4 cut(s) 620, 654, 744, 1455
TspGWI ACGGA 2 cut(s) 483, 1034
TspRI CASTG 1 cut(s) 1034
VpaK11BI GGWCC 4 cut(s) 185, 491, 529, 644
XapI RAATTY 2 cut(s) 986, 1184
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 1 cut(s) 265
XhoI CTCGAG 2 cut(s) 1241, 1324
XmiI GTMKAC 2 cut(s) 142, 245
XspI CTAG 5 cut(s) 402, 746, 821, 1034, 1634
ZrmI AGTACT 1 cut(s) 1583
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.