Rmu_co8167908.1_g000001

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8167908.1
OG0004633
Physical Location & Seq
Reverse (-)
2 .. 625
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8167908.1_g000001.1.cds

Sequence Viewer

Length: 624 bp
atgcgtggctcgatgcattcgattcagagggacatgattatgcttgagaatcagcttccacttttcgttcttgatcggctattgggtctgcagttgggggatcctgagcttaaaggacttgtatccaagctagcattgaggtttttcgatccattaatgccaacagatgagccattaacaaagagtgataggaacaaattggagtcatcactgggatatgcaacaacctttgatccattgtctgatcaaggtgcccttcattgccttgatgttttccgacgtagtctattgcgatcagggccgaaacctgtgccaagagtttggatcaagagatggtcaaacgtgaatcgggttgccgataaaaggaggacacagttgattcattgtgtcacagagcttagggaggccgggatcaagttcaagaagaggaagactgatcggttctgggatgtgaaatttgaaaatgggattctgagtattccaaggctcttgatccacgatggtactaaatctctattcctcaatcttattgcatttgagcagtgtcatcttgattgcagcaatgacattacctcctatgtcatcttcatggacaacttgatcaactctcctgctgatgtgggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

208

Amino Acids

23.88

Weight (kDa)

9.11

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AclWI GGATC 7 cut(s) 95, 108, 143, 227, 332, 419, 487
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 2 cut(s) 421, 461
AluBI AGCT 4 cut(s) 55, 109, 130, 397
AluI AGCT 4 cut(s) 55, 109, 130, 397
AlwI GGATC 7 cut(s) 95, 108, 143, 227, 332, 419, 487
AoxI GGCC 2 cut(s) 299, 405
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 455
AseI ATTAAT 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 409
AsuNHI GCTAGC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 570
BccI CCATC 2 cut(s) 327, 494
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 244, 600
BcnI CCSGG 1 cut(s) 409
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 559
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 102, 253
BmrFI CCNGG 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 3
BmtI GCTAGC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 437
Bpu10I CCTNAGC 2 cut(s) 105, 398
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 216
Bse3DI GCAATG 2 cut(s) 259, 568
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 2 cut(s) 259, 568
BseMII CTCAG 2 cut(s) 96, 464
BseNI ACTGG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 570
BshFI GGCC 2 cut(s) 301, 407
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 301, 407
Bsp1286I GDGCHC 1 cut(s) 256
BspANI GGCC 2 cut(s) 301, 407
BspCNI CTCAG 2 cut(s) 97, 465
BspLI GGNNCC 2 cut(s) 102, 253
BspMAI CTGCAG 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 7 cut(s) 95, 108, 143, 227, 332, 419, 487
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 259, 568
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 105, 398, 473
BstF5I GGATG 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 570
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 301, 407
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 2 cut(s) 209, 548
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 504
CviAII CATG 2 cut(s) 34, 589
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 3 cut(s) 105, 398, 473
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 37, 592
FaiI YATR 5 cut(s) 35, 41, 219, 579, 590
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 33, 588
FbaI TGATCA 2 cut(s) 244, 600
Fnu4HI GCNGC 1 cut(s) 559
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 1 cut(s) 559
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 559
HaeIII GGCC 2 cut(s) 301, 407
HapII CCGG 1 cut(s) 408
Hin1II CATG 2 cut(s) 37, 592
HinfI GANTC 6 cut(s) 22, 49, 203, 346, 379, 469
HpaII CCGG 1 cut(s) 408
Hpy188I TCNGA 4 cut(s) 27, 244, 278, 474
Hpy188III TCNNGA 6 cut(s) 71, 104, 328, 421, 490, 551
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 280, 342
HpyCH4V TGCA 5 cut(s) 16, 91, 221, 533, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 3 cut(s) 105, 398, 473
HpySE526I ACGT 2 cut(s) 280, 342
Hsp92II CATG 2 cut(s) 37, 592
Ksp22I TGATCA 2 cut(s) 244, 600
LpnPI CCDG 6 cut(s) 117, 197, 282, 321, 421, 430
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 280, 342
MaeIII GTNAC 1 cut(s) 388
MboII GAAGA 3 cut(s) 436, 442, 577
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 2 cut(s) 197, 455
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 21, 132, 360, 397, 420, 530, 583
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 3 cut(s) 111, 155, 176
MslI CAYNNNNRTG 2 cut(s) 38, 587
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 409
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 37, 592
NlaIV GGNNCC 2 cut(s) 102, 253
NmuCI GTSAC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 5 cut(s) 22, 49, 346, 379, 469
PflFI GACNNNGTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 560
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 102, 253
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 282
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 2 cut(s) 38, 587
SaqAI TTAA 3 cut(s) 111, 155, 176
SatI GCNGC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 38, 587
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 197, 455
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 2 cut(s) 283, 345
TaqI TCGA 3 cut(s) 11, 20, 147
TasI AATT 2 cut(s) 197, 455
TfiI GAWTC 5 cut(s) 22, 49, 346, 379, 469
Tru1I TTAA 3 cut(s) 111, 155, 176
Tru9I TTAA 3 cut(s) 111, 155, 176
TscAI CASTG 2 cut(s) 216, 548
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 248, 371, 577
TspRI CASTG 2 cut(s) 216, 548
Tth111I GACNNNGTC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 1 cut(s) 455
XspI CTAG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.