Rroxscaffold_2G00137170

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004633
Physical Location & Seq
Reverse (-)
74853146 .. 74854999
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137170.1

Sequence Viewer

Length: 1026 bp
ATGATGGTGCTTGATGGTTGCTTTGTGCTTGAGCTATTTCGTGGTGCAGCTGAGGGGTTTAAGCAACTCGGGTACCCTCGAAACGATCCCATTTTTGCAATGCGTGGCTCGATGCATTCGATTCAGAGGGACATGATTATGCTTGAGAATCAGCTTCCACTTTTCGTTCTTGATCGGCTATTGGGTCTGCAGTTGGGGGATCCTGAGCTTAAAGGACTTGTATCCAAGCTAGCATTGAGGTTTTTCGATCCATTAATGCCAACAGATGAGCCATTAACAAAGAGTGATAGGAACAAATTGGAGTCATCACTTGGATATGCAACAACCTTTGATCCATTGTCTGATCAAGGTGCCCTACATTGCCTTGATGTTTTCCGGCGTAGTCTATTGCGATCAGGGACGAAACCTGTGCCAAGAGTTTGGATCAAGAGATGGTCAAACGTGAATCGGGTTGCCGATAAAAGGAGGACACAGTTGATTTATTGTGTCACAGAGCTTAGGGAGGCCGGGATCAAGTTCAAGAAGAGGAAGACTGATCGGTTCTGGGATGTGAAATTTGAAAATGGGATTCTGAGTATTCCAAGGCTCTTGATCCACGATGGTACTAAATCTCTATTCCTCAATCTTATTGCATTTGAGCAGTGTCATCTTGATTGCAGCAATGACATTACCTCCTATGTCATCTTCATGGACAACTTGATCAACTCTCCTGCTGATGTGGGTTATCTACATTATTGTGGCATAATTGAACACTGGCTTGGCAGTGATGCTGAGGTTGCTGACCTATTTAATCGTCTCTGCCAAGAGGTGGTCTTCGACATCAACGACAGTTATCTTTCTCGGCTTTCGGCTGATGTAAACCGCTACTACGACCACCGGTGGAATGCATGGCGTGCCAGTTTAAAGCACAACTACTTCAGCAATCCCTGGGCCATCCTCTCCTTCCTTGCTGCTGTTGTGTTGCTGTTTCTGACTTTCACTCAAACTTTCTATGGAGTTTATAGCTACTACAGACCGCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

341

Amino Acids

39.49

Weight (kDa)

8.1

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 324 2.2e-100 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 2 cut(s) 72, 350
AccB7I CCANNNNNTGG 1 cut(s) 808
AciI CCGC 2 cut(s) 862, 1016
AclWI GGATC 8 cut(s) 80, 194, 207, 242, 326, 431, 518, 586
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 901
AfaI GTAC 2 cut(s) 74, 604
AfiI CCNNNNNNNGG 2 cut(s) 462, 808
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 3 cut(s) 520, 560, 749
AjnI CCWGG 1 cut(s) 926
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 7 cut(s) 34, 50, 154, 208, 229, 496, 1005
AluI AGCT 7 cut(s) 34, 50, 154, 208, 229, 496, 1005
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 8 cut(s) 80, 194, 207, 242, 326, 431, 518, 586
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 504, 930
ApeKI GCWGC 3 cut(s) 47, 657, 950
ApoI RAATTY 1 cut(s) 554
AseI ATTAAT 1 cut(s) 254
AsiGI ACCGGT 1 cut(s) 876
Asp718I GGTACC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 930
AsuC2I CCSGG 1 cut(s) 508
AsuNHI GCTAGC 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 355
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 2 cut(s) 72, 350
BbsI GAAGAC 2 cut(s) 536, 805
BbvCI CCTCAGC 2 cut(s) 51, 771
BbvI GCAGC 3 cut(s) 59, 669, 937
BccI CCATC 4 cut(s) 8, 426, 593, 941
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 928
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 2 cut(s) 343, 699
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 2 cut(s) 230, 1024
BfmI CTRYAG 2 cut(s) 188, 1009
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 3 cut(s) 48, 658, 951
BlsI GCNGC 3 cut(s) 49, 659, 952
Bme1390I CCNGG 2 cut(s) 508, 928
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 930
BmiI GGNNCC 3 cut(s) 74, 201, 352
BmrFI CCNGG 2 cut(s) 508, 928
BmsI GCATC 2 cut(s) 102, 757
BmtI GCTAGC 1 cut(s) 233
BpiI GAAGAC 2 cut(s) 536, 805
Bpu10I CCTNAGC 4 cut(s) 51, 204, 497, 771
BpuEI CTTGAG 2 cut(s) 50, 164
BpuMI CCSGG 1 cut(s) 508
BsaJI CCNNGG 3 cut(s) 581, 926, 927
BsaWI WCCGGW 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 808
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 758, 897
Bse3DI GCAATG 3 cut(s) 105, 358, 667
BseBI CCWGG 1 cut(s) 928
BseDI CCNNGG 3 cut(s) 581, 926, 927
BseGI GGATG 2 cut(s) 553, 933
BseLI CCNNNNNNNGG 2 cut(s) 462, 808
BseMI GCAATG 3 cut(s) 105, 358, 667
BseMII CTCAG 4 cut(s) 42, 195, 563, 762
BseNI ACTGG 2 cut(s) 758, 897
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 3 cut(s) 59, 669, 937
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 2 cut(s) 506, 932
BshNI GGYRCC 2 cut(s) 72, 350
BshTI ACCGGT 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 376, 507, 877
BslFI GGGAC 2 cut(s) 143, 412
BslI CCNNNNNNNGG 2 cut(s) 462, 808
BsmAI GTCTC 1 cut(s) 800
BsmBI CGTCTC 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 143, 412
BsmI GAATGC 2 cut(s) 115, 889
BsnI GGCC 2 cut(s) 506, 932
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 355
BspACI CCGC 2 cut(s) 862, 1016
BspANI GGCC 2 cut(s) 506, 932
BspCNI CTCAG 4 cut(s) 43, 196, 564, 763
BspLI GGNNCC 3 cut(s) 74, 201, 352
BspMAI CTGCAG 1 cut(s) 192
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 8 cut(s) 80, 194, 207, 242, 326, 431, 518, 586
BspT107I GGYRCC 2 cut(s) 72, 350
BsrDI GCAATG 3 cut(s) 105, 358, 667
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 2 cut(s) 758, 897
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 3 cut(s) 581, 926, 927
BssT1I CCWWGG 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 928
Bst4CI ACNGT 2 cut(s) 474, 830
Bst6I CTCTTC 1 cut(s) 518
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 231, 894
BstDEI CTNAG 5 cut(s) 51, 204, 497, 572, 771
BstF5I GGATG 2 cut(s) 553, 933
BstMAI GTCTC 1 cut(s) 800
BstMWI GCNNNNNNNGC 2 cut(s) 776, 893
BstNI CCWGG 1 cut(s) 928
BstSCI CCNGG 2 cut(s) 506, 926
BstSFI CTRYAG 2 cut(s) 188, 1009
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 3 cut(s) 59, 669, 937
BstV2I GAAGAC 2 cut(s) 536, 805
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 1 cut(s) 199
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 2 cut(s) 506, 932
BtsCI GGATG 2 cut(s) 553, 933
BtsI GCAGTG 2 cut(s) 647, 769
BtsIMutI CAGTG 3 cut(s) 647, 751, 769
Cac8I GCNNGC 2 cut(s) 231, 894
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 930
Csp6I GTAC 2 cut(s) 73, 603
CspAI ACCGGT 1 cut(s) 876
CviAII CATG 3 cut(s) 133, 688, 888
CviQI GTAC 2 cut(s) 73, 603
DdeI CTNAG 5 cut(s) 51, 204, 497, 572, 771
DraI TTTAAA 1 cut(s) 903
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 901
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 926
EcoT14I CCWWGG 1 cut(s) 581
EcoT22I ATGCAT 2 cut(s) 117, 889
ErhI CCWWGG 1 cut(s) 581
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 3 cut(s) 136, 691, 891
FaiI YATR 9 cut(s) 134, 140, 318, 678, 689, 743, 889, 993, 1002
FaqI GGGAC 2 cut(s) 143, 412
FatI CATG 3 cut(s) 132, 687, 887
FbaI TGATCA 2 cut(s) 343, 699
Fnu4HI GCNGC 3 cut(s) 48, 658, 951
FokI GGATG 2 cut(s) 560, 920
Fsp4HI GCNGC 3 cut(s) 48, 658, 951
FspBI CTAG 2 cut(s) 230, 1024
GluI GCNGC 3 cut(s) 48, 658, 951
HaeIII GGCC 2 cut(s) 506, 932
HapII CCGG 3 cut(s) 376, 507, 877
Hin1II CATG 3 cut(s) 136, 691, 891
HinfI GANTC 5 cut(s) 121, 148, 302, 445, 568
HpaII CCGG 3 cut(s) 376, 507, 877
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 4 cut(s) 126, 343, 573, 972
Hpy188III TCNNGA 6 cut(s) 170, 203, 427, 520, 589, 650
Hpy8I GTNNAC 1 cut(s) 859
HpyAV CCTTC 1 cut(s) 952
HpyCH4III ACNGT 2 cut(s) 474, 830
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 8 cut(s) 47, 98, 115, 190, 320, 632, 657, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 776, 893
HpyF3I CTNAG 5 cut(s) 51, 204, 497, 572, 771
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 136, 691, 891
KpnI GGTACC 1 cut(s) 76
Ksp22I TGATCA 2 cut(s) 343, 699
Lsp1109I GCAGC 3 cut(s) 59, 669, 937
LweI GCATC 2 cut(s) 102, 757
MaeI CTAG 2 cut(s) 230, 1024
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 487
MboII GAAGA 4 cut(s) 535, 541, 676, 805
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 3 cut(s) 296, 554, 744
MlyI GAGTC 1 cut(s) 311
Mph1103I ATGCAT 2 cut(s) 117, 889
MseI TTAA 6 cut(s) 60, 210, 254, 275, 789, 902
MslI CAYNNNNRTG 3 cut(s) 137, 686, 735
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 3 cut(s) 376, 507, 877
MspR9I CCNGG 2 cut(s) 508, 928
Mva1269I GAATGC 2 cut(s) 115, 889
MvaI CCWGG 1 cut(s) 928
MwoI GCNNNNNNNGC 2 cut(s) 776, 893
NciI CCSGG 1 cut(s) 508
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 3 cut(s) 136, 691, 891
NlaIV GGNNCC 3 cut(s) 74, 201, 352
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 2 cut(s) 117, 889
PasI CCCWGGG 1 cut(s) 927
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 822
PctI GAATGC 2 cut(s) 115, 889
PfeI GAWTC 4 cut(s) 121, 148, 445, 568
PflMI CCANNNNNTGG 1 cut(s) 808
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 3 cut(s) 49, 659, 952
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 926
PspGI CCWGG 1 cut(s) 926
PspN4I GGNNCC 3 cut(s) 74, 201, 352
PspPI GGNCC 1 cut(s) 930
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 74, 604
RsaNI GTAC 2 cut(s) 73, 603
RseI CAYNNNNRTG 3 cut(s) 137, 686, 735
SaqAI TTAA 6 cut(s) 60, 210, 254, 275, 789, 902
SatI GCNGC 3 cut(s) 48, 658, 951
Sau96I GGNCC 1 cut(s) 930
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 508, 928
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 2 cut(s) 102, 757
SfcI CTRYAG 2 cut(s) 188, 1009
SgrAI CRCCGGYG 1 cut(s) 876
SmiMI CAYNNNNRTG 3 cut(s) 137, 686, 735
SmlI CTYRAG 2 cut(s) 29, 143
SmoI CTYRAG 2 cut(s) 29, 143
Sse9I AATT 3 cut(s) 296, 554, 744
SsiI CCGC 2 cut(s) 862, 1016
SspMI CTAG 2 cut(s) 230, 1024
StyD4I CCNGG 2 cut(s) 506, 926
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 2 cut(s) 474, 830
TaiI ACGT 1 cut(s) 444
TaqI TCGA 5 cut(s) 79, 110, 119, 246, 816
TasI AATT 3 cut(s) 296, 554, 744
TfiI GAWTC 4 cut(s) 121, 148, 445, 568
Tru1I TTAA 6 cut(s) 60, 210, 254, 275, 789, 902
Tru9I TTAA 6 cut(s) 60, 210, 254, 275, 789, 902
TscAI CASTG 3 cut(s) 647, 758, 769
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 3 cut(s) 47, 657, 950
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 676
TspRI CASTG 3 cut(s) 647, 758, 769
Van91I CCANNNNNTGG 1 cut(s) 808
VspI ATTAAT 1 cut(s) 254
XapI RAATTY 1 cut(s) 554
XspI CTAG 2 cut(s) 230, 1024
Zsp2I ATGCAT 2 cut(s) 117, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.