AT3G50190

BEST Arabidopsis thaliana protein match is Plant protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004633
Physical Location & Seq
Reverse (-)
18608113 .. 18611263
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50190.1

Sequence Viewer

Length: 1482 bp
ATGGCAGTTCCTAGTAAACGACGATCACCACCTCCACCACCGCCGCCGCCCCAGCTACCATTTGGACCGAAGCTTCCTTTCCCTCATATTATCATAAGAAGAAAAGCAAGAAGAAATTATCAACTACGACCGATGTTGACCTGGTACTTCCTCACCTTCATGATGCGCCAAAAACTCCAAACCCGAAACCAACAACCTGAAGAGACACGGGAAGAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAGTAATGAGAGACGCCGCCACAACTAGCTGGGACAAGCTCTGTATCTACAGAGTTCCACTCTCCTTTCAAAAAAGCGACAAGAATTCCTACTTCCCTCACACTGTCTCTCTTGGTCCGTACCACCATGGGGACGAACATCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATATGGTCATGAAACGTACCAAGCAAGGCATCGAAATGTATATTGACGCCATGAAAGAGCTCGAAGAGAGGGCTCGTGCTTGCTACGAAGGTCCTATTGGTTTGAGCAGTAACAAGTTCACCCAAATGCTAGTTCTTGATGGCTGTTTTGTTCTCGATCTCTTCAGAGGAGCCTATGAAGGATTCTCGAAACTTGGCTATGATCGAAACGACCCTGTTTTCGCGATGCGAGGATCTATGCATTCGATTCGACGTGACATGCTAATGCTGGAAAATCAACTTCCTTTGATGCCAACTTATATGCCATCAACCAAAATCGAGAATTCGCAAGAAAACAACAATAAATTCTTTCACCCAATTGCTGACAAGGACAAGGAAGAGTTGCACTGTCTGGATGTTTTCCGTCGAAGTGTGCTCCAGCCTAGTCTGAAACCGGAGCCAAGGTTATCGCGTAGATGGTCCTGGAAACCCGTCGTGGCGGACAAGCGCCAACAAAAATTGCTACATTGCGTGACAGAACTAAGAGAAGCCGGTATAAAATTCAAAAGAAGAAAATCCGACCGGTTATGGGATATTCAATTCAAAAACGGTTGTCTAGAGATACCGAAACTACTTATCCATGACGGTACCAAGTCTCTCTTGTCAAATCTTATAGCTTTTGAGCAATGCCATATCGACTCAACCAAACAGATAACATCCTACATAATTTTCGTGGAGAATCTAATAAATTCTAACGAAGATGTTAGATACTTGCAATATTGTGGTATCATCGAGCATTGGCTTGAGAGTGACTCTGAAGTTGTGGATTTGTTCCACAAATTATGTCAAGACGTGGTTTTCGATCCCATTGATAGTTATCTATATCCACTTTGTCTTGGTGTAGACCGTTTTTACAGTCGTAAGTGGAGTCTGTTTAGTGCAGTCATATTACACAAGTACCAGCTCAACCTTAGAAGTCCTTGGGCATATTTTTCCTTTTTTGGTGCAGTTATTTTGCTACTTCTCACATTTTGTGAGAGTTTCTTTACTGTTTATGCTTATTTTGAGCCAAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

493

Amino Acids

58.43

Weight (kDa)

9.09

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 98 - 476 7.9e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 1305
AccII CGCG 2 cut(s) 647, 874
AciI CCGC 6 cut(s) 41, 44, 47, 264, 419, 902
AclWI GGATC 3 cut(s) 236, 664, 1259
AcsI RAATTY 5 cut(s) 331, 745, 767, 962, 1150
AcuI CTGAAG 3 cut(s) 219, 571, 1239
AcyI GRCGYC 2 cut(s) 261, 471
AfaI GTAC 5 cut(s) 146, 368, 442, 1051, 1361
AfiI CCNNNNNNNGG 3 cut(s) 376, 397, 991
AgeI ACCGGT 1 cut(s) 984
AgsI TTSAA 4 cut(s) 317, 967, 1001, 1006
AjiI CACGTC 2 cut(s) 677, 1255
AjnI CCWGG 2 cut(s) 140, 884
AjuI GAANNNNNNNTTGG 4 cut(s) 504, 536, 540, 572
AluBI AGCT 7 cut(s) 55, 73, 276, 286, 484, 1079, 1366
AluI AGCT 7 cut(s) 55, 73, 276, 286, 484, 1079, 1366
Alw21I GWGCWC 2 cut(s) 486, 840
Alw26I GTCTC 4 cut(s) 197, 252, 358, 1062
AlwI GGATC 3 cut(s) 236, 664, 1259
ApoI RAATTY 5 cut(s) 331, 745, 767, 962, 1150
ArsI GACNNNNNNTTYG 4 cut(s) 626, 658, 1244, 1276
AsiGI ACCGGT 1 cut(s) 984
Asp718I GGTACC 1 cut(s) 1049
AspLEI GCGC 2 cut(s) 168, 912
AspS9I GGNCC 4 cut(s) 65, 362, 515, 882
AsuHPI GGTGA 5 cut(s) 18, 145, 232, 535, 767
AvaII GGWCC 4 cut(s) 65, 362, 515, 882
BaeI ACNNNNGTAYC 2 cut(s) 1343, 1376
BanI GGYRCC 1 cut(s) 1049
BanII GRGCYC 2 cut(s) 486, 499
BauI CACGAG 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 486, 840
BccI CCATC 4 cut(s) 235, 557, 736, 873
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 2 cut(s) 142, 886
BcoDI GTCTC 4 cut(s) 197, 252, 358, 1062
BfaI CTAG 5 cut(s) 12, 273, 554, 846, 1019
BfmI CTRYAG 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 913
BisI GCNGC 3 cut(s) 44, 47, 264
BlsI GCNGC 3 cut(s) 45, 48, 265
Bme1390I CCNGG 2 cut(s) 142, 886
Bme18I GGWCC 4 cut(s) 65, 362, 515, 882
BmgBI CACGTC 2 cut(s) 677, 1255
BmgT120I GGNCC 4 cut(s) 65, 362, 515, 882
BmiI GGNNCC 3 cut(s) 595, 861, 1051
BmrFI CCNGG 2 cut(s) 142, 886
BmsI GCATC 4 cut(s) 153, 462, 639, 702
BplI GAGNNNNNCTC 4 cut(s) 291, 323, 1199, 1231
BpmI CTGGAG 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 1226
BsaBI GATNNNNATC 2 cut(s) 227, 1278
BsaHI GRCGYC 2 cut(s) 261, 471
BsaJI CCNNGG 4 cut(s) 373, 396, 863, 1382
BsaWI WCCGGW 2 cut(s) 856, 984
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 397, 991
Bse118I RCCGGY 2 cut(s) 953, 984
Bse3DI GCAATG 2 cut(s) 928, 1094
Bse8I GATNNNNATC 2 cut(s) 227, 1278
BseBI CCWGG 2 cut(s) 142, 886
BseDI CCNNGG 4 cut(s) 373, 396, 863, 1382
BseGI GGATG 2 cut(s) 823, 1118
BseJI GATNNNNATC 2 cut(s) 227, 1278
BseLI CCNNNNNNNGG 3 cut(s) 376, 397, 991
BseMI GCAATG 2 cut(s) 928, 1094
BseRI GAGGAG 1 cut(s) 606
BseYI CCCAGC 2 cut(s) 51, 276
BsgI GTGCAG 2 cut(s) 1362, 1428
Bsh1236I CGCG 2 cut(s) 647, 874
Bsh1285I CGRYCG 2 cut(s) 131, 985
BshNI GGYRCC 1 cut(s) 1049
BshTI ACCGGT 1 cut(s) 984
BsiEI CGRYCG 2 cut(s) 131, 985
BsiHKAI GWGCWC 2 cut(s) 486, 840
BsiSI CCGG 3 cut(s) 857, 954, 985
BslFI GGGAC 2 cut(s) 293, 392
BslI CCNNNNNNNGG 3 cut(s) 376, 397, 991
BsmAI GTCTC 4 cut(s) 197, 252, 358, 1062
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 293, 392
BsmI GAATGC 1 cut(s) 664
Bsp1286I GDGCHC 3 cut(s) 486, 499, 840
Bsp143I GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
Bsp19I CCATGG 2 cut(s) 373, 396
Bsp68I TCGCGA 1 cut(s) 647
BspACI CCGC 6 cut(s) 41, 44, 47, 264, 419, 902
BspFNI CGCG 2 cut(s) 647, 874
BspHI TCATGA 2 cut(s) 159, 432
BspLI GGNNCC 3 cut(s) 595, 861, 1051
BspPI GGATC 3 cut(s) 236, 664, 1259
BspT107I GGYRCC 1 cut(s) 1049
BsrDI GCAATG 2 cut(s) 928, 1094
BsrFI RCCGGY 2 cut(s) 953, 984
BssAI RCCGGY 2 cut(s) 953, 984
BssECI CCNNGG 4 cut(s) 373, 396, 863, 1382
BssMI GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
BssNI GRCGYC 2 cut(s) 261, 471
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 4 cut(s) 373, 396, 863, 1382
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 142, 886
Bst4CI ACNGT 7 cut(s) 352, 812, 1013, 1049, 1310, 1319, 1453
Bst6I CTCTTC 4 cut(s) 195, 483, 590, 795
BstACI GRCGYC 2 cut(s) 261, 471
BstC8I GCNNGC 2 cut(s) 417, 505
BstDEI CTNAG 2 cut(s) 944, 1373
BstDSI CCRYGG 2 cut(s) 373, 396
BstF5I GGATG 2 cut(s) 823, 1118
BstFNI CGCG 2 cut(s) 647, 874
BstH2I RGCGCY 1 cut(s) 913
BstHHI GCGC 2 cut(s) 168, 912
BstKTI GATC 6 cut(s) 26, 231, 583, 628, 659, 1267
BstMAI GTCTC 4 cut(s) 197, 252, 358, 1062
BstMBI GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
BstMCI CGRYCG 2 cut(s) 131, 985
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 2 cut(s) 142, 886
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 140, 884
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 2 cut(s) 647, 874
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BtgI CCRYGG 2 cut(s) 373, 396
BtgZI GCGATG 1 cut(s) 662
BtrI CACGTC 2 cut(s) 677, 1255
BtsCI GGATG 2 cut(s) 823, 1118
BtsIMutI CAGTG 2 cut(s) 348, 808
BtuMI TCGCGA 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 417, 505
CciI TCATGA 2 cut(s) 159, 432
CfoI GCGC 2 cut(s) 168, 912
Cfr10I RCCGGY 2 cut(s) 953, 984
Cfr13I GGNCC 4 cut(s) 65, 362, 515, 882
CseI GACGC 2 cut(s) 269, 479
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 5 cut(s) 145, 367, 441, 1050, 1360
CspAI ACCGGT 1 cut(s) 984
CviAII CATG 7 cut(s) 160, 374, 397, 433, 475, 682, 1043
CviQI GTAC 5 cut(s) 145, 367, 441, 1050, 1360
DdeI CTNAG 2 cut(s) 944, 1373
DpnI GATC 6 cut(s) 25, 230, 582, 627, 658, 1266
DpnII GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
Eam1104I CTCTTC 4 cut(s) 195, 483, 590, 795
EarI CTCTTC 4 cut(s) 195, 483, 590, 795
EciI GGCGGA 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 4 cut(s) 373, 396, 863, 1382
Eco24I GRGCYC 2 cut(s) 486, 499
Eco47I GGWCC 4 cut(s) 65, 362, 515, 882
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 3 cut(s) 219, 571, 1239
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 515
EcoRI GAATTC 2 cut(s) 331, 745
EcoRII CCWGG 2 cut(s) 140, 884
EcoT14I CCWWGG 4 cut(s) 373, 396, 863, 1382
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 2 cut(s) 486, 499
ErhI CCWWGG 4 cut(s) 373, 396, 863, 1382
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 7 cut(s) 163, 377, 400, 436, 478, 685, 1046
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 2 cut(s) 293, 392
FatI CATG 7 cut(s) 159, 373, 396, 432, 474, 681, 1042
FblI GTMKAC 1 cut(s) 1305
Fnu4HI GCNGC 3 cut(s) 44, 47, 264
FokI GGATG 2 cut(s) 830, 1105
FriOI GRGCYC 2 cut(s) 486, 499
Fsp4HI GCNGC 3 cut(s) 44, 47, 264
FspBI CTAG 5 cut(s) 12, 273, 554, 846, 1019
GlaI GCGC 2 cut(s) 167, 911
GluI GCNGC 3 cut(s) 44, 47, 264
GsaI CCCAGC 2 cut(s) 55, 280
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 913
HapII CCGG 3 cut(s) 857, 954, 985
HgaI GACGC 2 cut(s) 269, 479
HhaI GCGC 2 cut(s) 168, 912
Hin1I GRCGYC 2 cut(s) 261, 471
Hin1II CATG 7 cut(s) 163, 377, 400, 436, 478, 685, 1046
Hin6I GCGC 2 cut(s) 166, 910
HinP1I GCGC 2 cut(s) 166, 910
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 606, 670, 1100, 1141, 1214, 1330
HpaII CCGG 3 cut(s) 857, 954, 985
HphI GGTGA 5 cut(s) 18, 145, 232, 535, 767
Hpy166II GTNNAC 4 cut(s) 17, 138, 543, 1306
Hpy188I TCNGA 5 cut(s) 392, 590, 852, 982, 1219
Hpy8I GTNNAC 4 cut(s) 17, 138, 543, 1306
Hpy99I CGWCG 4 cut(s) 24, 678, 831, 899
HpyAV CCTTC 3 cut(s) 166, 506, 596
HpyCH4III ACNGT 7 cut(s) 352, 812, 1013, 1049, 1310, 1319, 1453
HpyCH4IV ACGT 3 cut(s) 439, 676, 1254
HpyCH4V TGCA 5 cut(s) 664, 808, 1177, 1343, 1409
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 944, 1373
HpySE526I ACGT 3 cut(s) 439, 676, 1254
Hsp92I GRCGYC 2 cut(s) 261, 471
Hsp92II CATG 7 cut(s) 163, 377, 400, 436, 478, 685, 1046
HspAI GCGC 2 cut(s) 166, 910
KpnI GGTACC 1 cut(s) 1053
Kzo9I GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
LmnI GCTCC 4 cut(s) 244, 593, 843, 859
LweI GCATC 4 cut(s) 153, 462, 639, 702
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 5 cut(s) 12, 273, 554, 846, 1019
MaeII ACGT 3 cut(s) 439, 676, 1254
MaeIII GTNAC 4 cut(s) 533, 677, 934, 1211
MalI GATC 6 cut(s) 25, 230, 582, 627, 658, 1266
MboI GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
MboII GAAGA 9 cut(s) 111, 123, 212, 224, 500, 577, 812, 984, 1172
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 3 cut(s) 486, 499, 840
MlyI GAGTC 3 cut(s) 1094, 1208, 1339
MmeI TCCRAC 2 cut(s) 415, 1005
MnlI CCTC 7 cut(s) 42, 93, 161, 354, 486, 584, 647
Mph1103I ATGCAT 1 cut(s) 666
MseI TTAA 1 cut(s) 1480
MslI CAYNNNNRTG 4 cut(s) 158, 458, 548, 686
MspI CCGG 3 cut(s) 857, 954, 985
MspR9I CCNGG 2 cut(s) 142, 886
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 2 cut(s) 142, 886
MvnI CGCG 2 cut(s) 647, 874
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 2 cut(s) 373, 396
NdeII GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
NlaIII CATG 7 cut(s) 163, 377, 400, 436, 478, 685, 1046
NlaIV GGNNCC 3 cut(s) 595, 861, 1051
NmuCI GTSAC 3 cut(s) 677, 934, 1211
NruI TCGCGA 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 1 cut(s) 685
PagI TCATGA 2 cut(s) 159, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 1260
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 606, 670, 1141
PfoI TCCNGGA 1 cut(s) 884
PinAI ACCGGT 1 cut(s) 984
PkrI GCNGC 3 cut(s) 45, 48, 265
PleI GAGTC 3 cut(s) 1094, 1208, 1338
PpsI GAGTC 3 cut(s) 1094, 1208, 1338
PpuMI RGGWCCY 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 140, 884
PspFI CCCAGC 2 cut(s) 51, 276
PspGI CCWGG 2 cut(s) 140, 884
PspN4I GGNNCC 3 cut(s) 595, 861, 1051
PspPI GGNCC 4 cut(s) 65, 362, 515, 882
PspPPI RGGWCCY 1 cut(s) 515
PsuI RGATCY 1 cut(s) 656
RruI TCGCGA 1 cut(s) 647
RsaI GTAC 5 cut(s) 146, 368, 442, 1051, 1361
RsaNI GTAC 5 cut(s) 145, 367, 441, 1050, 1360
RseI CAYNNNNRTG 4 cut(s) 158, 458, 548, 686
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 1480
SatI GCNGC 3 cut(s) 44, 47, 264
Sau3AI GATC 6 cut(s) 23, 228, 580, 625, 656, 1264
Sau96I GGNCC 4 cut(s) 65, 362, 515, 882
SchI GAGTC 3 cut(s) 1094, 1208, 1339
ScrFI CCNGG 2 cut(s) 142, 886
SduI GDGCHC 3 cut(s) 486, 499, 840
SexAI ACCWGGT 1 cut(s) 140
SfaNI GCATC 4 cut(s) 153, 462, 639, 702
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 4 cut(s) 65, 362, 515, 882
SmiMI CAYNNNNRTG 4 cut(s) 158, 458, 548, 686
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
SsiI CCGC 6 cut(s) 41, 44, 47, 264, 419, 902
SspI AATATT 1 cut(s) 1181
SspMI CTAG 5 cut(s) 12, 273, 554, 846, 1019
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 140, 884
StyI CCWWGG 4 cut(s) 373, 396, 863, 1382
TaaI ACNGT 7 cut(s) 352, 812, 1013, 1049, 1310, 1319, 1453
TaiI ACGT 3 cut(s) 442, 679, 1257
TaqII GACCGA 2 cut(s) 82, 145
TauI GCSGC 3 cut(s) 46, 49, 266
TfiI GAWTC 3 cut(s) 606, 670, 1141
Tru1I TTAA 1 cut(s) 1480
Tru9I TTAA 1 cut(s) 1480
TscAI CASTG 2 cut(s) 355, 815
TseFI GTSAC 3 cut(s) 677, 934, 1211
Tsp45I GTSAC 3 cut(s) 677, 934, 1211
TspDTI ATGAA 4 cut(s) 148, 449, 491, 615
TspGWI ACGGA 2 cut(s) 354, 815
TspRI CASTG 2 cut(s) 355, 815
VpaK11BI GGWCC 4 cut(s) 65, 362, 515, 882
XapI RAATTY 5 cut(s) 331, 745, 767, 962, 1150
XbaI TCTAGA 1 cut(s) 1018
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 1305
XspI CTAG 5 cut(s) 12, 273, 554, 846, 1019
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.