Rh2DG193200

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004633
Physical Location & Seq
Forward (+)
17608413 .. 17610456
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG193200.1

Sequence Viewer

Length: 1068 bp
ATGGTTGCTGTGTTCAACAAGGAGCTCCTGAGCTGGTACCTGATCACAGTCAAGCTCCGAGAAACAGTTGAATCCGGAATAGCAAATCCGAACCAATCAATCCAATCTCCTGATCAGAATCTGCAGAAACGAGAGCAGCAACAATCTCAGTCACTCCAAGTTGTGATCCAAAATGGTGGTGATGGGAAATTTGAAGAAGGGCCGAAATCGCCAGAGTCCGAGTGGGTTCTCACCATCAAAGATAAACTCGAGCAAGCTTCTCAAGACGATGCAGCAAATGTGTGGTCAAAGCTCTGCATCTACAGAGTCCCACATTACCTGAGAGAAGGTGATGACAAAGCTTATGTTCCTCAGATTGTGTCATTGGGGCCTTACCACCATGGAAGGAGACGCCTTCGCCAAATGGACCGCCACAAGTGGCGTTCGCTACATCAAATGCTCAAGAGGACTAATCAGGACATAAAGCTCTATCTGGATTCTATGAAAGAAGTTGAAGAAAAAGCTCGGTCTTGCTATGAAGGGCCGGTTGCAATAAGCCTTAGTAGCAATGAGTTTGTTGAAATGATGGTGCTTGATGGTTGCTTTGTGCTTGAGCTATTTCGTGGTGCAGCTGATGGGTTTAAGCAACTCGGGTACCCTCGAAACGATCCCATTTTTGCAATGCGTGGCTCGATGCATTCGATTCAGAGGGACATGATTATGCTTGAGAATCAGCTTCCACTTTTCGTTCTTGATCGGCTATTGGGTCTGCAGTTGGGGGATCCTGAGCTTAAAGGACTTGTATCCAAGCTAGCATTGAGGTTTTTCGATCCATTAATGCCAACAGATGAGCCATTAACAAAGAGTGATAGGAACAAATTGGAGTCATCACTGGGATATGCAACAACCTTTGATCCATTGTCTGATCAAGGTGCCCTTCATTGCCTTGATGTTTTCCGACGTAGTCTATTGCGATCAGGGCCGAAACCTGTGCCAAGAGTTTGGATCAAGAGATGGTCAAACGTGAATCGGGTTGCCGATAAAAGGAGGACACAGAGAAGCCTTTACTGCCACAAGCAACAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

355

Amino Acids

40.9

Weight (kDa)

9.05

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 100 - 322 6.2e-61 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 36, 633
AccB1I GGYRCC 3 cut(s) 36, 633, 911
AccIII TCCGGA 1 cut(s) 74
AciI CCGC 1 cut(s) 409
AclWI GGATC 7 cut(s) 160, 641, 755, 768, 803, 887, 992
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 2 cut(s) 38, 635
AfiI CCNNNNNNNGG 1 cut(s) 1023
AgsI TTSAA 5 cut(s) 16, 71, 194, 494, 560
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 7 cut(s) 160, 641, 755, 768, 803, 887, 992
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 248, 629
Aor13HI TCCGGA 1 cut(s) 74
AoxI GGCC 4 cut(s) 200, 368, 521, 959
ApeKI GCWGC 3 cut(s) 136, 272, 608
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AseI ATTAAT 1 cut(s) 815
Asp718I GGTACC 2 cut(s) 36, 633
AspS9I GGNCC 5 cut(s) 200, 368, 406, 521, 959
AsuHPI GGTGA 3 cut(s) 191, 223, 341
AsuNHI GCTAGC 1 cut(s) 790
AvaI CYCGRG 2 cut(s) 248, 629
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 916
BaeI ACNNNNGTAYC 2 cut(s) 617, 650
BamHI GGATCC 1 cut(s) 760
BanI GGYRCC 3 cut(s) 36, 633, 911
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 148, 284, 620
BccI CCATC 6 cut(s) 176, 242, 559, 569, 608, 987
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 3 cut(s) 42, 112, 904
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 791
BfmI CTRYAG 3 cut(s) 122, 301, 749
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 3 cut(s) 137, 273, 609
BlsI GCNGC 3 cut(s) 138, 274, 610
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 2 cut(s) 248, 629
BmgT120I GGNCC 5 cut(s) 200, 368, 406, 521, 959
BmiI GGNNCC 5 cut(s) 38, 369, 635, 762, 913
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 3 cut(s) 259, 306, 663
BmtI GCTAGC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 881
Bpu10I CCTNAGC 2 cut(s) 29, 765
BpuEI CTTGAG 4 cut(s) 246, 425, 611, 725
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 1023
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 876
Bse3DI GCAATG 3 cut(s) 553, 666, 919
Bse8I GATNNNNATC 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 379
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 1023
BseMI GCAATG 3 cut(s) 553, 666, 919
BseMII CTCAG 5 cut(s) 20, 161, 311, 365, 756
BseNI ACTGG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 3 cut(s) 148, 284, 620
BsgI GTGCAG 1 cut(s) 627
BshFI GGCC 4 cut(s) 202, 370, 523, 961
BshNI GGYRCC 3 cut(s) 36, 633, 911
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 2 cut(s) 248, 629
BsiSI CCGG 2 cut(s) 75, 524
BslFI GGGAC 2 cut(s) 293, 704
BslI CCNNNNNNNGG 1 cut(s) 1023
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 293, 704
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 4 cut(s) 202, 370, 523, 961
BsoBI CYCGRG 2 cut(s) 248, 629
Bsp1286I GDGCHC 2 cut(s) 27, 916
Bsp13I TCCGGA 1 cut(s) 74
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 1 cut(s) 409
BspANI GGCC 4 cut(s) 202, 370, 523, 961
BspCNI CTCAG 5 cut(s) 21, 160, 312, 364, 757
BspEI TCCGGA 1 cut(s) 74
BspLI GGNNCC 5 cut(s) 38, 369, 635, 762, 913
BspMAI CTGCAG 2 cut(s) 126, 753
BspOI GCTAGC 1 cut(s) 794
BspPI GGATC 7 cut(s) 160, 641, 755, 768, 803, 887, 992
BspT107I GGYRCC 3 cut(s) 36, 633, 911
BsrDI GCAATG 3 cut(s) 553, 666, 919
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 1 cut(s) 876
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 379
BssNI GRCGYC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 49, 67
BstACI GRCGYC 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 255, 792
BstDEI CTNAG 6 cut(s) 29, 147, 320, 351, 539, 765
BstDSI CCRYGG 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 382
BstMWI GCNNNNNNNGC 4 cut(s) 208, 543, 958, 1047
BstSFI CTRYAG 3 cut(s) 122, 301, 749
BstSLI GKGCMC 1 cut(s) 916
BstV1I GCAGC 3 cut(s) 148, 284, 620
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 2 cut(s) 176, 981
BstYI RGATCY 1 cut(s) 760
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 4 cut(s) 202, 370, 523, 961
BtgI CCRYGG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 869
Cac8I GCNNGC 2 cut(s) 255, 792
CaiI CAGNNNCTG 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 5 cut(s) 200, 368, 406, 521, 959
CseI GACGC 1 cut(s) 399
Csp6I GTAC 2 cut(s) 37, 634
CviAII CATG 2 cut(s) 380, 694
CviQI GTAC 2 cut(s) 37, 634
DdeI CTNAG 6 cut(s) 29, 147, 320, 351, 539, 765
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 25
Eco88I CYCGRG 2 cut(s) 248, 629
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 2 cut(s) 383, 697
FaiI YATR 8 cut(s) 345, 381, 461, 482, 516, 695, 701, 879
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 2 cut(s) 293, 704
FatI CATG 2 cut(s) 379, 693
FbaI TGATCA 3 cut(s) 42, 112, 904
Fnu4HI GCNGC 3 cut(s) 137, 273, 609
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 137, 273, 609
FspBI CTAG 1 cut(s) 791
GluI GCNGC 3 cut(s) 137, 273, 609
HaeIII GGCC 4 cut(s) 202, 370, 523, 961
HapII CCGG 2 cut(s) 75, 524
HgaI GACGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 2 cut(s) 383, 697
HindIII AAGCTT 2 cut(s) 255, 339
HinfI GANTC 9 cut(s) 71, 118, 215, 306, 476, 682, 709, 863, 1006
HpaII CCGG 2 cut(s) 75, 524
HphI GGTGA 3 cut(s) 191, 223, 341
Hpy188I TCNGA 8 cut(s) 59, 90, 117, 220, 354, 687, 904, 938
Hpy99I CGWCG 1 cut(s) 942
HpyAV CCTTC 6 cut(s) 191, 320, 378, 404, 512, 926
HpyCH4III ACNGT 2 cut(s) 49, 67
HpyCH4IV ACGT 2 cut(s) 940, 1002
HpyCH4V TGCA 9 cut(s) 124, 272, 297, 530, 608, 659, 676, 751, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 543, 958, 1047
HpyF3I CTNAG 6 cut(s) 29, 147, 320, 351, 539, 765
HpySE526I ACGT 2 cut(s) 940, 1002
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 2 cut(s) 383, 697
Kpn2I TCCGGA 1 cut(s) 74
KpnI GGTACC 2 cut(s) 40, 637
Ksp22I TGATCA 3 cut(s) 42, 112, 904
LmnI GCTCC 3 cut(s) 22, 30, 60
Lsp1109I GCAGC 3 cut(s) 148, 284, 620
LweI GCATC 3 cut(s) 259, 306, 663
MaeI CTAG 1 cut(s) 791
MaeII ACGT 2 cut(s) 940, 1002
MaeIII GTNAC 1 cut(s) 150
MboII GAAGA 2 cut(s) 206, 506
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 2 cut(s) 27, 916
MluCI AATT 2 cut(s) 188, 857
MlyI GAGTC 3 cut(s) 224, 315, 872
MmeI TCCRAC 1 cut(s) 961
MnlI CCTC 6 cut(s) 360, 438, 648, 681, 792, 1020
Mph1103I ATGCAT 1 cut(s) 678
MroI TCCGGA 1 cut(s) 74
MseI TTAA 4 cut(s) 621, 771, 815, 836
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 2 cut(s) 75, 524
Mva1269I GAATGC 1 cut(s) 676
MwoI GCNNNNNNNGC 4 cut(s) 208, 543, 958, 1047
NcoI CCATGG 1 cut(s) 379
NheI GCTAGC 1 cut(s) 790
NlaIII CATG 2 cut(s) 383, 697
NlaIV GGNNCC 5 cut(s) 38, 369, 635, 762, 913
NmuCI GTSAC 1 cut(s) 150
NsiI ATGCAT 1 cut(s) 678
PaeR7I CTCGAG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 6 cut(s) 71, 118, 476, 682, 709, 1006
PflFI GACNNNGTC 1 cut(s) 942
PkrI GCNGC 3 cut(s) 138, 274, 610
PleI GAGTC 3 cut(s) 223, 314, 871
PpsI GAGTC 3 cut(s) 223, 314, 871
PshBI ATTAAT 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 5 cut(s) 38, 369, 635, 762, 913
PspPI GGNCC 5 cut(s) 200, 368, 406, 521, 959
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 2 cut(s) 126, 753
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 760
PsyI GACNNNGTC 1 cut(s) 942
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 2 cut(s) 38, 635
RsaNI GTAC 2 cut(s) 37, 634
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 621, 771, 815, 836
SatI GCNGC 3 cut(s) 137, 273, 609
Sau96I GGNCC 5 cut(s) 200, 368, 406, 521, 959
SchI GAGTC 3 cut(s) 224, 315, 872
SduI GDGCHC 2 cut(s) 27, 916
SfaNI GCATC 3 cut(s) 259, 306, 663
SfcI CTRYAG 3 cut(s) 122, 301, 749
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 406
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 5 cut(s) 248, 261, 440, 590, 704
SmoI CTYRAG 5 cut(s) 248, 261, 440, 590, 704
Sse9I AATT 2 cut(s) 188, 857
SsiI CCGC 1 cut(s) 409
SspMI CTAG 1 cut(s) 791
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 49, 67
TaiI ACGT 2 cut(s) 943, 1005
TaqI TCGA 5 cut(s) 249, 640, 671, 680, 807
TaqII GACCGA 1 cut(s) 495
TasI AATT 2 cut(s) 188, 857
TfiI GAWTC 6 cut(s) 71, 118, 476, 682, 709, 1006
Tru1I TTAA 4 cut(s) 621, 771, 815, 836
Tru9I TTAA 4 cut(s) 621, 771, 815, 836
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 3 cut(s) 136, 272, 608
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 497, 531, 908
TspRI CASTG 1 cut(s) 876
Tth111I GACNNNGTC 1 cut(s) 942
VpaK11BI GGWCC 1 cut(s) 406
VspI ATTAAT 1 cut(s) 815
XapI RAATTY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 1 cut(s) 791
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.