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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50370 AT3G50370 |
| fragaria_vesca | FvH4_5g28170 FvH4_5g28170 |
| malus_domestica | MD02G1171200.v1.1 MD15G1283100.v1.1 |
| prunus_persica | Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 |
| pyrus_communis | pycom02g13790 pycom15g24620 |
| rosa_chinensis | RchiOBHm_Chr2g0105371 |
| rosa_laevigata | RLG00000017420 |
| rosa_multiflora | Rmu_sc0001407.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00138260 |
| rosa_rugosa | Rorug02G0127800 Rorug02G0127900 Rorug02G0127900 Rorug02G0127900 |
| rosa_samantha | Rh2AG178600 Rh2BG187000 Rh2CG183100 Rh2DG184500 |
| rosa_wichuraiana | Rw2G014020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1116, 5667 |
| AarI | CACCTGC | 1 cut(s) | 428 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4891 |
| Acc36I | ACCTGC | 5 cut(s) | 160, 428, 3070, 3642, 5851 |
| AccB1I | GGYRCC | 1 cut(s) | 4856 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 891, 1256, 3158, 4226, 6349 |
| AccBSI | CCGCTC | 1 cut(s) | 1462 |
| AccI | GTMKAC | 3 cut(s) | 3192, 3494, 6087 |
| AciI | CCGC | 7 cut(s) | 48, 74, 1375, 1462, 3054, 3527, 5468 |
| AclI | AACGTT | 1 cut(s) | 6066 |
| AcoI | YGGCCR | 4 cut(s) | 3180, 4010, 5345, 6351 |
| AcuI | CTGAAG | 7 cut(s) | 360, 1686, 3254, 3285, 3743, 5106, 5837 |
| AcvI | CACGTG | 1 cut(s) | 2294 |
| AdeI | CACNNNGTG | 1 cut(s) | 5624 |
| AfaI | GTAC | 7 cut(s) | 1254, 1821, 3925, 5020, 5179, 5251, 5841 |
| AfeI | AGCGCT | 1 cut(s) | 3247 |
| AflII | CTTAAG | 1 cut(s) | 688 |
| AflIII | ACRYGT | 3 cut(s) | 589, 2293, 5655 |
| AhlI | ACTAGT | 2 cut(s) | 677, 5267 |
| AjiI | CACGTC | 1 cut(s) | 1851 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1980, 2012, 3393, 3425, 5755, 5787 |
| Alw21I | GWGCWC | 5 cut(s) | 546, 2659, 4651, 5926, 6136 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 197, 383, 2711, 5114, 5525 |
| Ama87I | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| Aor51HI | AGCGCT | 1 cut(s) | 3247 |
| ApaI | GGGCCC | 1 cut(s) | 6282 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1211, 1243, 3814, 3846 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 348, 1936 |
| AspLEI | GCGC | 2 cut(s) | 3248, 3915 |
| AsuC2I | CCSGG | 2 cut(s) | 2048, 5622 |
| AsuNHI | GCTAGC | 1 cut(s) | 4508 |
| AvaI | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| BaeGI | GKGCMC | 4 cut(s) | 2023, 3719, 4051, 6282 |
| BalI | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| BamHI | GGATCC | 1 cut(s) | 3590 |
| BanI | GGYRCC | 1 cut(s) | 4856 |
| BanII | GRGCYC | 2 cut(s) | 546, 6282 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1419, 1451 |
| BauI | CACGAG | 2 cut(s) | 1446, 2130 |
| BbrPI | CACGTG | 1 cut(s) | 2294 |
| BbsI | GAAGAC | 5 cut(s) | 1072, 1770, 2272, 3697, 5889 |
| Bbv12I | GWGCWC | 5 cut(s) | 546, 2659, 4651, 5926, 6136 |
| BbvCI | CCTCAGC | 4 cut(s) | 3672, 3930, 4956, 5283 |
| BceAI | ACGGC | 4 cut(s) | 1454, 2169, 3024, 4374 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 5252, 5286, 5950, 5984 |
| BciVI | GTATCC | 2 cut(s) | 2792, 3860 |
| BclI | TGATCA | 3 cut(s) | 2062, 4672, 5382 |
| BcnI | CCSGG | 2 cut(s) | 2048, 5622 |
| BcuI | ACTAGT | 2 cut(s) | 677, 5267 |
| BfmI | CTRYAG | 5 cut(s) | 189, 435, 1743, 2389, 4479 |
| BfoI | RGCGCY | 1 cut(s) | 3249 |
| BfrI | CTTAAG | 1 cut(s) | 688 |
| BfuAI | ACCTGC | 5 cut(s) | 160, 428, 3070, 3642, 5851 |
| BfuI | GTATCC | 2 cut(s) | 2792, 3860 |
| BglII | AGATCT | 3 cut(s) | 1810, 2842, 5314 |
| BlpI | GCTNAGC | 5 cut(s) | 288, 545, 1617, 4123, 6405 |
| BmcAI | AGTACT | 2 cut(s) | 1254, 5179 |
| BmeT110I | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| BmgBI | CACGTC | 1 cut(s) | 1851 |
| BmrI | ACTGGG | 1 cut(s) | 1244 |
| BmtI | GCTAGC | 1 cut(s) | 4512 |
| BmuI | ACTGGG | 1 cut(s) | 1244 |
| BpiI | GAAGAC | 5 cut(s) | 1072, 1770, 2272, 3697, 5889 |
| BpmI | CTGGAG | 5 cut(s) | 56, 2103, 3726, 5382, 5583 |
| Bpu10I | CCTNAGC | 4 cut(s) | 3672, 3930, 4956, 5283 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 288, 545, 1617, 4123, 6405 |
| BpuEI | CTTGAG | 3 cut(s) | 834, 1358, 5194 |
| BpuMI | CCSGG | 2 cut(s) | 2048, 5622 |
| Bsa29I | ATCGAT | 1 cut(s) | 2469 |
| BsaAI | YACGTR | 2 cut(s) | 1905, 2294 |
| BsaBI | GATNNNNATC | 5 cut(s) | 9, 2475, 4026, 4677, 5430 |
| BsaI | GGTCTC | 1 cut(s) | 496 |
| BsaWI | WCCGGW | 4 cut(s) | 119, 4130, 5779, 6315 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 45, 75, 2907, 2937, 6118, 6148 |
| Bse118I | RCCGGY | 5 cut(s) | 528, 1371, 2481, 4774, 5591 |
| Bse3DI | GCAATG | 4 cut(s) | 1849, 4946, 5834, 6099 |
| Bse8I | GATNNNNATC | 5 cut(s) | 9, 2475, 4026, 4677, 5430 |
| BseCI | ATCGAT | 1 cut(s) | 2469 |
| BseJI | GATNNNNATC | 5 cut(s) | 9, 2475, 4026, 4677, 5430 |
| BseMI | GCAATG | 4 cut(s) | 1849, 4946, 5834, 6099 |
| BseSI | GKGCMC | 4 cut(s) | 2023, 3719, 4051, 6282 |
| BseYI | CCCAGC | 5 cut(s) | 134, 2721, 2933, 3459, 6281 |
| BsgI | GTGCAG | 3 cut(s) | 303, 3912, 4998 |
| BshNI | GGYRCC | 1 cut(s) | 4856 |
| BshVI | ATCGAT | 1 cut(s) | 2469 |
| BsiHKAI | GWGCWC | 5 cut(s) | 546, 2659, 4651, 5926, 6136 |
| BsiHKCI | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| BslFI | GGGAC | 8 cut(s) | 340, 713, 2014, 2346, 4084, 4759, 5485, 5658 |
| BsmBI | CGTCTC | 3 cut(s) | 267, 1857, 5853 |
| BsmFI | GGGAC | 8 cut(s) | 340, 713, 2014, 2346, 4084, 4759, 5485, 5658 |
| BsmI | GAATGC | 5 cut(s) | 2053, 3733, 4144, 4439, 5173 |
| Bso31I | GGTCTC | 1 cut(s) | 496 |
| BsoBI | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| Bsp120I | GGGCCC | 1 cut(s) | 6278 |
| Bsp1286I | GDGCHC | 9 cut(s) | 546, 2023, 2659, 3719, 4051, 4651, 5926, 6136, 6282 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 288, 545, 1617, 4123, 6405 |
| Bsp19I | CCATGG | 3 cut(s) | 1073, 6331, 6348 |
| BspACI | CCGC | 7 cut(s) | 48, 74, 1375, 1462, 3054, 3527, 5468 |
| BspDI | ATCGAT | 1 cut(s) | 2469 |
| BspHI | TCATGA | 3 cut(s) | 1237, 1303, 2569 |
| BspMAI | CTGCAG | 3 cut(s) | 439, 1747, 4483 |
| BspMI | ACCTGC | 5 cut(s) | 160, 428, 3070, 3642, 5851 |
| BspOI | GCTAGC | 1 cut(s) | 4512 |
| BspQI | GCTCTTC | 2 cut(s) | 1696, 4656 |
| BspT107I | GGYRCC | 1 cut(s) | 4856 |
| BspTI | CTTAAG | 1 cut(s) | 688 |
| BspTNI | GGTCTC | 1 cut(s) | 496 |
| BsrBI | CCGCTC | 1 cut(s) | 1462 |
| BsrDI | GCAATG | 4 cut(s) | 1849, 4946, 5834, 6099 |
| BsrFI | RCCGGY | 5 cut(s) | 528, 1371, 2481, 4774, 5591 |
| BssAI | RCCGGY | 5 cut(s) | 528, 1371, 2481, 4774, 5591 |
| BssNAI | GTATAC | 1 cut(s) | 3495 |
| BssSI | CACGAG | 2 cut(s) | 1446, 2130 |
| BssT1I | CCWWGG | 7 cut(s) | 1073, 3081, 3511, 3594, 4434, 6331, 6348 |
| Bst1107I | GTATAC | 1 cut(s) | 3495 |
| Bst2BI | CACGAG | 2 cut(s) | 1446, 2130 |
| BstAFI | CTTAAG | 1 cut(s) | 688 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5114 |
| BstBAI | YACGTR | 2 cut(s) | 1905, 2294 |
| BstDSI | CCRYGG | 4 cut(s) | 1073, 3040, 6331, 6348 |
| BstEII | GGTNACC | 2 cut(s) | 212, 4754 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 958 |
| BstH2I | RGCGCY | 1 cut(s) | 3249 |
| BstHHI | GCGC | 2 cut(s) | 3248, 3915 |
| BstNSI | RCATGY | 7 cut(s) | 593, 785, 3091, 5659, 5941, 6034, 6272 |
| BstPI | GGTNACC | 2 cut(s) | 212, 4754 |
| BstSFI | CTRYAG | 5 cut(s) | 189, 435, 1743, 2389, 4479 |
| BstSLI | GKGCMC | 4 cut(s) | 2023, 3719, 4051, 6282 |
| BstV2I | GAAGAC | 5 cut(s) | 1072, 1770, 2272, 3697, 5889 |
| BstX2I | RGATCY | 5 cut(s) | 1195, 1810, 2842, 3590, 5314 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3554 |
| BstYI | RGATCY | 5 cut(s) | 1195, 1810, 2842, 3590, 5314 |
| BstZ17I | GTATAC | 1 cut(s) | 3495 |
| Bsu15I | ATCGAT | 1 cut(s) | 2469 |
| BsuI | GTATCC | 2 cut(s) | 2792, 3860 |
| BsuTUI | ATCGAT | 1 cut(s) | 2469 |
| BtgI | CCRYGG | 4 cut(s) | 1073, 3040, 6331, 6348 |
| BtgZI | GCGATG | 2 cut(s) | 2462, 2952 |
| BtrI | CACGTC | 1 cut(s) | 1851 |
| BtsI | GCAGTG | 1 cut(s) | 620 |
| BtsIMutI | CAGTG | 9 cut(s) | 620, 871, 2023, 3719, 4992, 5079, 5167, 5328, 6126 |
| BveI | ACCTGC | 5 cut(s) | 160, 428, 3070, 3642, 5851 |
| CaiI | CAGNNNCTG | 5 cut(s) | 197, 383, 2711, 5114, 5525 |
| CciI | TCATGA | 3 cut(s) | 1237, 1303, 2569 |
| CfoI | GCGC | 2 cut(s) | 3248, 3915 |
| Cfr10I | RCCGGY | 5 cut(s) | 528, 1371, 2481, 4774, 5591 |
| ClaI | ATCGAT | 1 cut(s) | 2469 |
| CseI | GACGC | 7 cut(s) | 2104, 3087, 4116, 4674, 5486, 5835, 6098 |
| Csp6I | GTAC | 7 cut(s) | 1253, 1820, 3924, 5019, 5178, 5250, 5840 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1941, 1976 |
| CviQI | GTAC | 7 cut(s) | 1253, 1820, 3924, 5019, 5178, 5250, 5840 |
| DraI | TTTAAA | 1 cut(s) | 1287 |
| DraIII | CACNNNGTG | 1 cut(s) | 5624 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4891 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4891 |
| EaeI | YGGCCR | 4 cut(s) | 3180, 4010, 5345, 6351 |
| EciI | GGCGGA | 1 cut(s) | 1390 |
| Ecl136II | GAGCTC | 1 cut(s) | 544 |
| Eco130I | CCWWGG | 7 cut(s) | 1073, 3081, 3511, 3594, 4434, 6331, 6348 |
| Eco147I | AGGCCT | 1 cut(s) | 760 |
| Eco24I | GRGCYC | 2 cut(s) | 546, 6282 |
| Eco31I | GGTCTC | 1 cut(s) | 496 |
| Eco32I | GATATC | 4 cut(s) | 7, 2012, 3968, 6059 |
| Eco47III | AGCGCT | 1 cut(s) | 3247 |
| Eco53kI | GAGCTC | 1 cut(s) | 544 |
| Eco57I | CTGAAG | 7 cut(s) | 360, 1686, 3254, 3285, 3743, 5106, 5837 |
| Eco72I | CACGTG | 1 cut(s) | 2294 |
| Eco88I | CYCGRG | 3 cut(s) | 273, 2237, 3939 |
| Eco91I | GGTNACC | 2 cut(s) | 212, 4754 |
| EcoICRI | GAGCTC | 1 cut(s) | 544 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 958 |
| EcoO109I | RGGNCCY | 7 cut(s) | 951, 3105, 5402, 5447, 5603, 5645, 5951 |
| EcoO65I | GGTNACC | 2 cut(s) | 212, 4754 |
| EcoRI | GAATTC | 2 cut(s) | 1991, 2076 |
| EcoRV | GATATC | 4 cut(s) | 7, 2012, 3968, 6059 |
| EcoT14I | CCWWGG | 7 cut(s) | 1073, 3081, 3511, 3594, 4434, 6331, 6348 |
| EcoT22I | ATGCAT | 2 cut(s) | 2871, 3093 |
| EcoT38I | GRGCYC | 2 cut(s) | 546, 6282 |
| ErhI | CCWWGG | 7 cut(s) | 1073, 3081, 3511, 3594, 4434, 6331, 6348 |
| Esp3I | CGTCTC | 3 cut(s) | 267, 1857, 5853 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2318, 2350, 4224, 4256 |
| FaqI | GGGAC | 8 cut(s) | 340, 713, 2014, 2346, 4084, 4759, 5485, 5658 |
| FauI | CCCGC | 2 cut(s) | 41, 5475 |
| FauNDI | CATATG | 1 cut(s) | 3447 |
| FbaI | TGATCA | 3 cut(s) | 2062, 4672, 5382 |
| FblI | GTMKAC | 3 cut(s) | 3192, 3494, 6087 |
| FriOI | GRGCYC | 2 cut(s) | 546, 6282 |
| GlaI | GCGC | 2 cut(s) | 3247, 3914 |
| GsaI | CCCAGC | 5 cut(s) | 138, 2725, 2937, 3463, 6285 |
| GsuI | CTGGAG | 5 cut(s) | 56, 2103, 3726, 5382, 5583 |
| HaeII | RGCGCY | 1 cut(s) | 3249 |
| HgaI | GACGC | 7 cut(s) | 2104, 3087, 4116, 4674, 5486, 5835, 6098 |
| HhaI | GCGC | 2 cut(s) | 3248, 3915 |
| Hin6I | GCGC | 2 cut(s) | 3246, 3913 |
| HinP1I | GCGC | 2 cut(s) | 3246, 3913 |
| HincII | GTYRAC | 2 cut(s) | 2957, 3485 |
| HindII | GTYRAC | 2 cut(s) | 2957, 3485 |
| HindIII | AAGCTT | 1 cut(s) | 1625 |
| Hpy99I | CGWCG | 2 cut(s) | 2786, 3975 |
| HspAI | GCGC | 2 cut(s) | 3246, 3913 |
| KroI | GCCGGC | 2 cut(s) | 528, 1371 |
| KroNI | GCCGGC | 2 cut(s) | 530, 1373 |
| Ksp22I | TGATCA | 3 cut(s) | 2062, 4672, 5382 |
| LguI | GCTCTTC | 2 cut(s) | 1696, 4656 |
| MbiI | CCGCTC | 1 cut(s) | 1462 |
| MfeI | CAATTG | 2 cut(s) | 2058, 4569 |
| MflI | RGATCY | 5 cut(s) | 1195, 1810, 2842, 3590, 5314 |
| MhlI | GDGCHC | 9 cut(s) | 546, 2023, 2659, 3719, 4051, 4651, 5926, 6136, 6282 |
| MlsI | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| MluNI | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| MmeI | TCCRAC | 8 cut(s) | 1617, 2051, 4116, 4515, 4572, 5665, 5764, 5981 |
| Mox20I | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| Mph1103I | ATGCAT | 2 cut(s) | 2871, 3093 |
| MreI | CGCCGGCG | 1 cut(s) | 1371 |
| MroNI | GCCGGC | 2 cut(s) | 528, 1371 |
| MroXI | GAANNNNTTC | 2 cut(s) | 348, 1936 |
| MscI | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| MslI | CAYNNNNRTG | 6 cut(s) | 120, 222, 2874, 3401, 4605, 6273 |
| Msp20I | TGGCCA | 4 cut(s) | 3182, 4012, 5347, 6353 |
| MspA1I | CMGCKG | 3 cut(s) | 287, 2006, 6423 |
| MspCI | CTTAAG | 1 cut(s) | 688 |
| MunI | CAATTG | 2 cut(s) | 2058, 4569 |
| Mva1269I | GAATGC | 5 cut(s) | 2053, 3733, 4144, 4439, 5173 |
| NaeI | GCCGGC | 2 cut(s) | 530, 1373 |
| NciI | CCSGG | 2 cut(s) | 2048, 5622 |
| NcoI | CCATGG | 3 cut(s) | 1073, 6331, 6348 |
| NdeI | CATATG | 1 cut(s) | 3447 |
| NgoMIV | GCCGGC | 2 cut(s) | 528, 1371 |
| NheI | GCTAGC | 1 cut(s) | 4508 |
| NmeAIII | GCCGAG | 2 cut(s) | 486, 4538 |
| NmuCI | GTSAC | 6 cut(s) | 1175, 1217, 2510, 3598, 3771, 4334 |
| NsiI | ATGCAT | 2 cut(s) | 2871, 3093 |
| NspI | RCATGY | 7 cut(s) | 593, 785, 3091, 5659, 5941, 6034, 6272 |
| PaeI | GCATGC | 2 cut(s) | 785, 3091 |
| PagI | TCATGA | 3 cut(s) | 1237, 1303, 2569 |
| PaqCI | CACCTGC | 1 cut(s) | 428 |
| PceI | AGGCCT | 1 cut(s) | 760 |
| PciI | ACATGT | 2 cut(s) | 589, 5655 |
| PciSI | GCTCTTC | 2 cut(s) | 1696, 4656 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 104, 1444, 4889 |
| PctI | GAATGC | 5 cut(s) | 2053, 3733, 4144, 4439, 5173 |
| PdiI | GCCGGC | 2 cut(s) | 530, 1373 |
| PdmI | GAANNNNTTC | 2 cut(s) | 348, 1936 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 891, 1256, 3158, 4226, 6349 |
| PfoI | TCCNGGA | 5 cut(s) | 1652, 2046, 2080, 2161, 3586 |
| PmaCI | CACGTG | 1 cut(s) | 2294 |
| PmlI | CACGTG | 1 cut(s) | 2294 |
| Ppu21I | YACGTR | 2 cut(s) | 1905, 2294 |
| PpuMI | RGGWCCY | 5 cut(s) | 3105, 5447, 5603, 5645, 5951 |
| PscI | ACATGT | 2 cut(s) | 589, 5655 |
| PsiI | TTATAA | 2 cut(s) | 1116, 5667 |
| Psp124BI | GAGCTC | 1 cut(s) | 546 |
| Psp1406I | AACGTT | 1 cut(s) | 6066 |
| Psp5II | RGGWCCY | 5 cut(s) | 3105, 5447, 5603, 5645, 5951 |
| PspCI | CACGTG | 1 cut(s) | 2294 |
| PspEI | GGTNACC | 2 cut(s) | 212, 4754 |
| PspFI | CCCAGC | 5 cut(s) | 134, 2721, 2933, 3459, 6281 |
| PspOMI | GGGCCC | 1 cut(s) | 6278 |
| PspPPI | RGGWCCY | 5 cut(s) | 3105, 5447, 5603, 5645, 5951 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 469, 501 |
| PstI | CTGCAG | 3 cut(s) | 439, 1747, 4483 |
| PstNI | CAGNNNCTG | 5 cut(s) | 197, 383, 2711, 5114, 5525 |
| PsuI | RGATCY | 5 cut(s) | 1195, 1810, 2842, 3590, 5314 |
| PvuII | CAGCTG | 3 cut(s) | 287, 2006, 6423 |
| RsaI | GTAC | 7 cut(s) | 1254, 1821, 3925, 5020, 5179, 5251, 5841 |
| RsaNI | GTAC | 7 cut(s) | 1253, 1820, 3924, 5019, 5178, 5250, 5840 |
| RseI | CAYNNNNRTG | 6 cut(s) | 120, 222, 2874, 3401, 4605, 6273 |
| SacI | GAGCTC | 1 cut(s) | 546 |
| SapI | GCTCTTC | 2 cut(s) | 1696, 4656 |
| ScaI | AGTACT | 2 cut(s) | 1254, 5179 |
| SduI | GDGCHC | 9 cut(s) | 546, 2023, 2659, 3719, 4051, 4651, 5926, 6136, 6282 |
| SfcI | CTRYAG | 5 cut(s) | 189, 435, 1743, 2389, 4479 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1371 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 120, 222, 2874, 3401, 4605, 6273 |
| SmlI | CTYRAG | 4 cut(s) | 688, 849, 1337, 5173 |
| SmoI | CTYRAG | 4 cut(s) | 688, 849, 1337, 5173 |
| SpeI | ACTAGT | 2 cut(s) | 677, 5267 |
| SphI | GCATGC | 2 cut(s) | 785, 3091 |
| SseBI | AGGCCT | 1 cut(s) | 760 |
| SsiI | CCGC | 7 cut(s) | 48, 74, 1375, 1462, 3054, 3527, 5468 |
| SspI | AATATT | 1 cut(s) | 3157 |
| SstI | GAGCTC | 1 cut(s) | 546 |
| StuI | AGGCCT | 1 cut(s) | 760 |
| StyI | CCWWGG | 7 cut(s) | 1073, 3081, 3511, 3594, 4434, 6331, 6348 |
| TaqII | GACCGA | 1 cut(s) | 3709 |
| TatI | WGTACW | 2 cut(s) | 1252, 5177 |
| TauI | GCSGC | 2 cut(s) | 1465, 3056 |
| TscAI | CASTG | 9 cut(s) | 627, 871, 2023, 3726, 4999, 5086, 5167, 5328, 6133 |
| TseFI | GTSAC | 6 cut(s) | 1175, 1217, 2510, 3598, 3771, 4334 |
| Tsp45I | GTSAC | 6 cut(s) | 1175, 1217, 2510, 3598, 3771, 4334 |
| TspGWI | ACGGA | 3 cut(s) | 342, 2521, 2974 |
| TspRI | CASTG | 9 cut(s) | 627, 871, 2023, 3726, 4999, 5086, 5167, 5328, 6133 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 891, 1256, 3158, 4226, 6349 |
| Vha464I | CTTAAG | 1 cut(s) | 688 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 958 |
| XbaI | TCTAGA | 1 cut(s) | 1630 |
| XceI | RCATGY | 7 cut(s) | 593, 785, 3091, 5659, 5941, 6034, 6272 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 515, 651, 5340, 5538 |
| XmiI | GTMKAC | 3 cut(s) | 3192, 3494, 6087 |
| XmnI | GAANNNNTTC | 2 cut(s) | 348, 1936 |
| ZrmI | AGTACT | 2 cut(s) | 1254, 5179 |
| Zsp2I | ATGCAT | 2 cut(s) | 2871, 3093 |