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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50370 AT3G50370 |
| fragaria_vesca | FvH4_5g28170 FvH4_5g28170 |
| malus_domestica | MD02G1171200.v1.1 MD15G1283100.v1.1 |
| prunus_persica | Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 |
| pyrus_communis | pycom02g13790 pycom15g24620 |
| rosa_chinensis | RchiOBHm_Chr2g0105371 |
| rosa_laevigata | RLG00000017420 |
| rosa_multiflora | Rmu_sc0001407.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00138260 |
| rosa_rugosa | Rorug02G0127800 Rorug02G0127900 Rorug02G0127900 Rorug02G0127900 |
| rosa_samantha | Rh2AG178600 Rh2BG187000 Rh2CG183100 Rh2DG184500 |
| rosa_wichuraiana | Rw2G014020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 6179 |
| AarI | CACCTGC | 1 cut(s) | 6236 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3392 |
| Acc16I | TGCGCA | 1 cut(s) | 224 |
| Acc36I | ACCTGC | 2 cut(s) | 6236, 6587 |
| Acc65I | GGTACC | 1 cut(s) | 3481 |
| AccB1I | GGYRCC | 5 cut(s) | 3481, 4444, 5134, 5720, 6020 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1169, 4508, 6874 |
| AccBSI | CCGCTC | 1 cut(s) | 4442 |
| AccI | GTMKAC | 4 cut(s) | 4004, 7045, 7203, 7548 |
| AccII | CGCG | 3 cut(s) | 341, 5124, 7209 |
| AcoI | YGGCCR | 8 cut(s) | 2359, 3719, 3991, 6344, 6915, 6974, 7092, 7402 |
| AcyI | GRCGYC | 1 cut(s) | 4445 |
| AdeI | CACNNNGTG | 1 cut(s) | 7244 |
| AfeI | AGCGCT | 4 cut(s) | 239, 1535, 7339, 7587 |
| AflIII | ACRYGT | 2 cut(s) | 6954, 6979 |
| AgeI | ACCGGT | 2 cut(s) | 2942, 3200 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1496, 4902 |
| AhlI | ACTAGT | 1 cut(s) | 850 |
| AjiI | CACGTC | 2 cut(s) | 4702, 5261 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3025, 3057, 6428, 6460 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5134, 5166 |
| Alw21I | GWGCWC | 5 cut(s) | 234, 3516, 5504, 6526, 7262 |
| Alw44I | GTGCAC | 1 cut(s) | 6522 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 3803, 4508, 4574, 4685 |
| Aor51HI | AGCGCT | 4 cut(s) | 239, 1535, 7339, 7587 |
| ApaLI | GTGCAC | 1 cut(s) | 6522 |
| AseI | ATTAAT | 1 cut(s) | 5601 |
| AsiGI | ACCGGT | 2 cut(s) | 2942, 3200 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1060, 2417, 4388, 4837, 5660, 6170 |
| Asp718I | GGTACC | 1 cut(s) | 3481 |
| AspA2I | CCTAGG | 1 cut(s) | 4763 |
| AsuC2I | CCSGG | 7 cut(s) | 12, 117, 475, 920, 1613, 4191, 7114 |
| AsuNHI | GCTAGC | 1 cut(s) | 1789 |
| AvrII | CCTAGG | 1 cut(s) | 4763 |
| AxyI | CCTNAGG | 3 cut(s) | 1080, 3486, 3933 |
| BaeGI | GKGCMC | 1 cut(s) | 6526 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1417, 1450 |
| BalI | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| BamHI | GGATCC | 2 cut(s) | 1570, 1615 |
| BanI | GGYRCC | 5 cut(s) | 3481, 4444, 5134, 5720, 6020 |
| BanII | GRGCYC | 3 cut(s) | 4826, 5504, 7262 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 2845, 2877, 7036, 7068, 7532, 7564 |
| BauI | CACGAG | 3 cut(s) | 233, 1141, 2733 |
| BbsI | GAAGAC | 2 cut(s) | 1625, 2436 |
| Bbv12I | GWGCWC | 5 cut(s) | 234, 3516, 5504, 6526, 7262 |
| BbvCI | CCTCAGC | 2 cut(s) | 2188, 2809 |
| BceAI | ACGGC | 5 cut(s) | 712, 2346, 2610, 5708, 5742 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 713, 747, 1203, 1237, 3122, 3156 |
| BciVI | GTATCC | 3 cut(s) | 43, 2679, 4318 |
| BclI | TGATCA | 4 cut(s) | 2794, 6058, 6250, 7303 |
| BcnI | CCSGG | 7 cut(s) | 12, 117, 475, 920, 1613, 4191, 7114 |
| BcuI | ACTAGT | 1 cut(s) | 850 |
| BfmI | CTRYAG | 9 cut(s) | 2779, 2867, 3795, 4677, 5199, 5412, 6594, 7122, 7152 |
| BfoI | RGCGCY | 6 cut(s) | 241, 1537, 4448, 6539, 7341, 7589 |
| BfuAI | ACCTGC | 2 cut(s) | 6236, 6587 |
| BfuI | GTATCC | 3 cut(s) | 43, 2679, 4318 |
| BglII | AGATCT | 2 cut(s) | 6118, 6310 |
| BlnI | CCTAGG | 1 cut(s) | 4763 |
| BlpI | GCTNAGC | 1 cut(s) | 1998 |
| BmcAI | AGTACT | 1 cut(s) | 5170 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1496, 4902 |
| BmgBI | CACGTC | 2 cut(s) | 4702, 5261 |
| BmrI | ACTGGG | 3 cut(s) | 2158, 7202, 7236 |
| BmtI | GCTAGC | 1 cut(s) | 1793 |
| BmuI | ACTGGG | 3 cut(s) | 2158, 7202, 7236 |
| BpiI | GAAGAC | 2 cut(s) | 1625, 2436 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1520, 1552, 1620, 1652, 2716, 2748 |
| BpmI | CTGGAG | 6 cut(s) | 1647, 4086, 4458, 4944, 6648, 7204 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2188, 2809, 3998 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1998 |
| BpuEI | CTTGAG | 8 cut(s) | 568, 702, 1272, 1739, 4206, 4840, 6733, 7552 |
| BpuMI | CCSGG | 7 cut(s) | 12, 117, 475, 920, 1613, 4191, 7114 |
| BsaAI | YACGTR | 2 cut(s) | 4588, 7552 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2538, 7302 |
| BsaHI | GRCGYC | 1 cut(s) | 4445 |
| BsaI | GGTCTC | 3 cut(s) | 1389, 2244, 6125 |
| BsaWI | WCCGGW | 3 cut(s) | 2942, 3200, 3880 |
| Bse118I | RCCGGY | 6 cut(s) | 111, 272, 2942, 3200, 6053, 7090 |
| Bse21I | CCTNAGG | 3 cut(s) | 1080, 3486, 3933 |
| Bse3DI | GCAATG | 5 cut(s) | 569, 754, 3633, 7022, 7085 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2538, 7302 |
| BseJI | GATNNNNATC | 2 cut(s) | 2538, 7302 |
| BseMI | GCAATG | 5 cut(s) | 569, 754, 3633, 7022, 7085 |
| BseRI | GAGGAG | 7 cut(s) | 1823, 1964, 3299, 3966, 4032, 4965, 7207 |
| BseSI | GKGCMC | 1 cut(s) | 6526 |
| BseYI | CCCAGC | 4 cut(s) | 176, 3886, 4501, 6498 |
| BsgI | GTGCAG | 3 cut(s) | 743, 6816, 7530 |
| Bsh1236I | CGCG | 3 cut(s) | 341, 5124, 7209 |
| BshNI | GGYRCC | 5 cut(s) | 3481, 4444, 5134, 5720, 6020 |
| BshTI | ACCGGT | 2 cut(s) | 2942, 3200 |
| BsiHKAI | GWGCWC | 5 cut(s) | 234, 3516, 5504, 6526, 7262 |
| BsmBI | CGTCTC | 3 cut(s) | 735, 1948, 5736 |
| BsmI | GAATGC | 5 cut(s) | 1821, 3184, 3432, 3473, 5229 |
| Bso31I | GGTCTC | 3 cut(s) | 1389, 2244, 6125 |
| Bsp1286I | GDGCHC | 6 cut(s) | 234, 3516, 4826, 5504, 6526, 7262 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1998 |
| Bsp19I | CCATGG | 3 cut(s) | 2632, 6786, 7066 |
| BspFNI | CGCG | 3 cut(s) | 341, 5124, 7209 |
| BspHI | TCATGA | 3 cut(s) | 1578, 3046, 5643 |
| BspMAI | CTGCAG | 3 cut(s) | 2871, 5203, 6598 |
| BspMI | ACCTGC | 2 cut(s) | 6236, 6587 |
| BspOI | GCTAGC | 1 cut(s) | 1793 |
| BspQI | GCTCTTC | 3 cut(s) | 1912, 1920, 3504 |
| BspT107I | GGYRCC | 5 cut(s) | 3481, 4444, 5134, 5720, 6020 |
| BspTNI | GGTCTC | 3 cut(s) | 1389, 2244, 6125 |
| BsrBI | CCGCTC | 1 cut(s) | 4442 |
| BsrDI | GCAATG | 5 cut(s) | 569, 754, 3633, 7022, 7085 |
| BsrFI | RCCGGY | 6 cut(s) | 111, 272, 2942, 3200, 6053, 7090 |
| BssAI | RCCGGY | 6 cut(s) | 111, 272, 2942, 3200, 6053, 7090 |
| BssNAI | GTATAC | 3 cut(s) | 4005, 7046, 7549 |
| BssNI | GRCGYC | 1 cut(s) | 4445 |
| BssSI | CACGAG | 3 cut(s) | 233, 1141, 2733 |
| BssT1I | CCWWGG | 5 cut(s) | 2632, 2981, 4763, 6786, 7066 |
| Bst1107I | GTATAC | 3 cut(s) | 4005, 7046, 7549 |
| Bst2BI | CACGAG | 3 cut(s) | 233, 1141, 2733 |
| BstACI | GRCGYC | 1 cut(s) | 4445 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 7163 |
| BstBAI | YACGTR | 2 cut(s) | 4588, 7552 |
| BstDSI | CCRYGG | 5 cut(s) | 339, 2632, 5138, 6786, 7066 |
| BstEII | GGTNACC | 1 cut(s) | 6885 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2779, 6594 |
| BstFNI | CGCG | 3 cut(s) | 341, 5124, 7209 |
| BstH2I | RGCGCY | 6 cut(s) | 241, 1537, 4448, 6539, 7341, 7589 |
| BstNSI | RCATGY | 8 cut(s) | 712, 1994, 3352, 5629, 5809, 6856, 6958, 6983 |
| BstPI | GGTNACC | 1 cut(s) | 6885 |
| BstSFI | CTRYAG | 9 cut(s) | 2779, 2867, 3795, 4677, 5199, 5412, 6594, 7122, 7152 |
| BstSLI | GKGCMC | 1 cut(s) | 6526 |
| BstUI | CGCG | 3 cut(s) | 341, 5124, 7209 |
| BstV2I | GAAGAC | 2 cut(s) | 1625, 2436 |
| BstX2I | RGATCY | 6 cut(s) | 1570, 1615, 3827, 5372, 6118, 6310 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2357, 7400 |
| BstYI | RGATCY | 6 cut(s) | 1570, 1615, 3827, 5372, 6118, 6310 |
| BstZ17I | GTATAC | 3 cut(s) | 4005, 7046, 7549 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1080, 3486, 3933 |
| BsuI | GTATCC | 3 cut(s) | 43, 2679, 4318 |
| BtgI | CCRYGG | 5 cut(s) | 339, 2632, 5138, 6786, 7066 |
| BtrI | CACGTC | 2 cut(s) | 4702, 5261 |
| BtsI | GCAGTG | 8 cut(s) | 136, 169, 539, 775, 1414, 5956, 6563, 6890 |
| BveI | ACCTGC | 2 cut(s) | 6236, 6587 |
| CaiI | CAGNNNCTG | 4 cut(s) | 3803, 4508, 4574, 4685 |
| CciI | TCATGA | 3 cut(s) | 1578, 3046, 5643 |
| Cfr10I | RCCGGY | 6 cut(s) | 111, 272, 2942, 3200, 6053, 7090 |
| Cfr42I | CCGCGG | 1 cut(s) | 342 |
| CseI | GACGC | 2 cut(s) | 4629, 5542 |
| CsiI | ACCWGGT | 2 cut(s) | 6157, 6637 |
| CspAI | ACCGGT | 2 cut(s) | 2942, 3200 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 186, 221, 325, 360 |
| DinI | GGCGCC | 1 cut(s) | 4446 |
| DraIII | CACNNNGTG | 1 cut(s) | 7244 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3392 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1496, 4902 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3392 |
| EaeI | YGGCCR | 8 cut(s) | 2359, 3719, 3991, 6344, 6915, 6974, 7092, 7402 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1496, 4902 |
| EciI | GGCGGA | 3 cut(s) | 896, 1727, 6772 |
| Ecl136II | GAGCTC | 2 cut(s) | 5502, 7260 |
| Eco130I | CCWWGG | 5 cut(s) | 2632, 2981, 4763, 6786, 7066 |
| Eco147I | AGGCCT | 2 cut(s) | 157, 304 |
| Eco24I | GRGCYC | 3 cut(s) | 4826, 5504, 7262 |
| Eco31I | GGTCTC | 3 cut(s) | 1389, 2244, 6125 |
| Eco32I | GATATC | 1 cut(s) | 2494 |
| Eco47III | AGCGCT | 4 cut(s) | 239, 1535, 7339, 7587 |
| Eco53kI | GAGCTC | 2 cut(s) | 5502, 7260 |
| Eco81I | CCTNAGG | 3 cut(s) | 1080, 3486, 3933 |
| Eco91I | GGTNACC | 1 cut(s) | 6885 |
| EcoICRI | GAGCTC | 2 cut(s) | 5502, 7260 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2779, 6594 |
| EcoO109I | RGGNCCY | 7 cut(s) | 491, 599, 2217, 3369, 5473, 6452, 6546 |
| EcoO65I | GGTNACC | 1 cut(s) | 6885 |
| EcoRI | GAATTC | 5 cut(s) | 1060, 2573, 3531, 6367, 7231 |
| EcoRV | GATATC | 1 cut(s) | 2494 |
| EcoT14I | CCWWGG | 5 cut(s) | 2632, 2981, 4763, 6786, 7066 |
| EcoT22I | ATGCAT | 1 cut(s) | 3354 |
| EcoT38I | GRGCYC | 3 cut(s) | 4826, 5504, 7262 |
| EgeI | GGCGCC | 1 cut(s) | 4446 |
| EheI | GGCGCC | 1 cut(s) | 4446 |
| ErhI | CCWWGG | 5 cut(s) | 2632, 2981, 4763, 6786, 7066 |
| Esp3I | CGTCTC | 3 cut(s) | 735, 1948, 5736 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 292, 324 |
| FauI | CCCGC | 2 cut(s) | 1023, 6414 |
| FauNDI | CATATG | 3 cut(s) | 1363, 3561, 3666 |
| FbaI | TGATCA | 4 cut(s) | 2794, 6058, 6250, 7303 |
| FblI | GTMKAC | 4 cut(s) | 4004, 7045, 7203, 7548 |
| FriOI | GRGCYC | 3 cut(s) | 4826, 5504, 7262 |
| FseI | GGCCGGCC | 1 cut(s) | 115 |
| FspI | TGCGCA | 1 cut(s) | 224 |
| GsaI | CCCAGC | 4 cut(s) | 180, 3890, 4505, 6502 |
| GsuI | CTGGAG | 6 cut(s) | 1647, 4086, 4458, 4944, 6648, 7204 |
| HaeII | RGCGCY | 6 cut(s) | 241, 1537, 4448, 6539, 7341, 7589 |
| HgaI | GACGC | 2 cut(s) | 4629, 5542 |
| Hin1I | GRCGYC | 1 cut(s) | 4445 |
| HincII | GTYRAC | 2 cut(s) | 397, 706 |
| HindII | GTYRAC | 2 cut(s) | 397, 706 |
| HindIII | AAGCTT | 2 cut(s) | 2006, 3836 |
| Hpy99I | CGWCG | 3 cut(s) | 738, 4623, 4706 |
| HpyCH4IV | ACGT | 5 cut(s) | 4587, 4701, 5260, 5729, 7551 |
| HpySE526I | ACGT | 5 cut(s) | 4587, 4701, 5260, 5729, 7551 |
| Hsp92I | GRCGYC | 1 cut(s) | 4445 |
| KasI | GGCGCC | 1 cut(s) | 4444 |
| KflI | GGGWCCC | 2 cut(s) | 491, 3369 |
| KpnI | GGTACC | 1 cut(s) | 3485 |
| KroI | GCCGGC | 2 cut(s) | 111, 7090 |
| KroNI | GCCGGC | 2 cut(s) | 113, 7092 |
| Ksp22I | TGATCA | 4 cut(s) | 2794, 6058, 6250, 7303 |
| KspI | CCGCGG | 1 cut(s) | 342 |
| LguI | GCTCTTC | 3 cut(s) | 1912, 1920, 3504 |
| MabI | ACCWGGT | 2 cut(s) | 6157, 6637 |
| MaeII | ACGT | 5 cut(s) | 4587, 4701, 5260, 5729, 7551 |
| MbiI | CCGCTC | 1 cut(s) | 4442 |
| MfeI | CAATTG | 2 cut(s) | 4208, 5328 |
| MflI | RGATCY | 6 cut(s) | 1570, 1615, 3827, 5372, 6118, 6310 |
| MhlI | GDGCHC | 6 cut(s) | 234, 3516, 4826, 5504, 6526, 7262 |
| MlsI | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| MluNI | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| Mly113I | GGCGCC | 1 cut(s) | 4445 |
| MlyI | GAGTC | 9 cut(s) | 24, 2576, 2984, 4093, 4862, 4912, 5627, 6293, 7118 |
| Mox20I | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| Mph1103I | ATGCAT | 1 cut(s) | 3354 |
| MroNI | GCCGGC | 2 cut(s) | 111, 7090 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1060, 2417, 4388, 4837, 5660, 6170 |
| MscI | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| MslI | CAYNNNNRTG | 6 cut(s) | 129, 1044, 2487, 3564, 3699, 5051 |
| Msp20I | TGGCCA | 5 cut(s) | 3993, 6346, 6917, 6976, 7404 |
| MspA1I | CMGCKG | 8 cut(s) | 341, 1756, 2135, 4304, 5288, 5918, 5927, 6626 |
| MunI | CAATTG | 2 cut(s) | 4208, 5328 |
| Mva1269I | GAATGC | 5 cut(s) | 1821, 3184, 3432, 3473, 5229 |
| MvnI | CGCG | 3 cut(s) | 341, 5124, 7209 |
| NaeI | GCCGGC | 2 cut(s) | 113, 7092 |
| NarI | GGCGCC | 1 cut(s) | 4445 |
| NciI | CCSGG | 7 cut(s) | 12, 117, 475, 920, 1613, 4191, 7114 |
| NcoI | CCATGG | 3 cut(s) | 2632, 6786, 7066 |
| NdeI | CATATG | 3 cut(s) | 1363, 3561, 3666 |
| NgoMIV | GCCGGC | 2 cut(s) | 111, 7090 |
| NheI | GCTAGC | 1 cut(s) | 1789 |
| NmeAIII | GCCGAG | 1 cut(s) | 3697 |
| NsbI | TGCGCA | 1 cut(s) | 224 |
| NsiI | ATGCAT | 1 cut(s) | 3354 |
| NspI | RCATGY | 8 cut(s) | 712, 1994, 3352, 5629, 5809, 6856, 6958, 6983 |
| PaeI | GCATGC | 3 cut(s) | 1994, 3352, 5629 |
| PagI | TCATGA | 3 cut(s) | 1578, 3046, 5643 |
| PaqCI | CACCTGC | 1 cut(s) | 6236 |
| PasI | CCCWGGG | 3 cut(s) | 3092, 4021, 6881 |
| PceI | AGGCCT | 2 cut(s) | 157, 304 |
| PciI | ACATGT | 2 cut(s) | 6954, 6979 |
| PciSI | GCTCTTC | 3 cut(s) | 1912, 1920, 3504 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5146 |
| PctI | GAATGC | 5 cut(s) | 1821, 3184, 3432, 3473, 5229 |
| PdiI | GCCGGC | 2 cut(s) | 113, 7092 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1060, 2417, 4388, 4837, 5660, 6170 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1169, 4508, 6874 |
| PfoI | TCCNGGA | 6 cut(s) | 10, 2577, 3609, 4102, 5475, 7112 |
| PinAI | ACCGGT | 2 cut(s) | 2942, 3200 |
| PleI | GAGTC | 9 cut(s) | 23, 2575, 2984, 4093, 4861, 4911, 5626, 6292, 7117 |
| PluTI | GGCGCC | 1 cut(s) | 4448 |
| PpsI | GAGTC | 9 cut(s) | 23, 2575, 2984, 4093, 4861, 4911, 5626, 6292, 7117 |
| Ppu21I | YACGTR | 2 cut(s) | 4588, 7552 |
| PpuMI | RGGWCCY | 6 cut(s) | 491, 2217, 3369, 5473, 6452, 6546 |
| PscI | ACATGT | 2 cut(s) | 6954, 6979 |
| PshBI | ATTAAT | 1 cut(s) | 5601 |
| PsiI | TTATAA | 1 cut(s) | 6179 |
| Psp124BI | GAGCTC | 2 cut(s) | 5504, 7262 |
| Psp5II | RGGWCCY | 6 cut(s) | 491, 2217, 3369, 5473, 6452, 6546 |
| PspEI | GGTNACC | 1 cut(s) | 6885 |
| PspFI | CCCAGC | 4 cut(s) | 176, 3886, 4501, 6498 |
| PspPPI | RGGWCCY | 6 cut(s) | 491, 2217, 3369, 5473, 6452, 6546 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3792, 3824 |
| PstI | CTGCAG | 3 cut(s) | 2871, 5203, 6598 |
| PstNI | CAGNNNCTG | 4 cut(s) | 3803, 4508, 4574, 4685 |
| PsuI | RGATCY | 6 cut(s) | 1570, 1615, 3827, 5372, 6118, 6310 |
| PvuII | CAGCTG | 4 cut(s) | 2135, 5288, 5927, 6626 |
| RigI | GGCCGGCC | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 6 cut(s) | 129, 1044, 2487, 3564, 3699, 5051 |
| SacI | GAGCTC | 2 cut(s) | 5504, 7262 |
| SacII | CCGCGG | 1 cut(s) | 342 |
| SapI | GCTCTTC | 3 cut(s) | 1912, 1920, 3504 |
| SbfI | CCTGCAGG | 1 cut(s) | 6598 |
| ScaI | AGTACT | 1 cut(s) | 5170 |
| SchI | GAGTC | 9 cut(s) | 24, 2576, 2984, 4093, 4862, 4912, 5627, 6293, 7118 |
| SdaI | CCTGCAGG | 1 cut(s) | 6598 |
| SduI | GDGCHC | 6 cut(s) | 234, 3516, 4826, 5504, 6526, 7262 |
| SexAI | ACCWGGT | 2 cut(s) | 6157, 6637 |
| SfcI | CTRYAG | 9 cut(s) | 2779, 2867, 3795, 4677, 5199, 5412, 6594, 7122, 7152 |
| SfoI | GGCGCC | 1 cut(s) | 4446 |
| Sfr303I | CCGCGG | 1 cut(s) | 342 |
| SgrBI | CCGCGG | 1 cut(s) | 342 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 129, 1044, 2487, 3564, 3699, 5051 |
| SmlI | CTYRAG | 8 cut(s) | 547, 717, 1287, 1718, 4221, 4819, 6712, 7567 |
| SmoI | CTYRAG | 8 cut(s) | 547, 717, 1287, 1718, 4221, 4819, 6712, 7567 |
| SpeI | ACTAGT | 1 cut(s) | 850 |
| SphI | GCATGC | 3 cut(s) | 1994, 3352, 5629 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 6598 |
| SseBI | AGGCCT | 2 cut(s) | 157, 304 |
| SspDI | GGCGCC | 1 cut(s) | 4444 |
| SspI | AATATT | 5 cut(s) | 3322, 3606, 4948, 5275, 5437 |
| SstI | GAGCTC | 2 cut(s) | 5504, 7262 |
| StuI | AGGCCT | 2 cut(s) | 157, 304 |
| StyI | CCWWGG | 5 cut(s) | 2632, 2981, 4763, 6786, 7066 |
| TaiI | ACGT | 5 cut(s) | 4590, 4704, 5263, 5732, 7554 |
| TaqII | GACCGA | 2 cut(s) | 1413, 5787 |
| TatI | WGTACW | 2 cut(s) | 2835, 5168 |
| TauI | GCSGC | 4 cut(s) | 1822, 3707, 4445, 5921 |
| TspGWI | ACGGA | 5 cut(s) | 25, 1370, 1972, 2631, 5155 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1169, 4508, 6874 |
| VneI | GTGCAC | 1 cut(s) | 6522 |
| VspI | ATTAAT | 1 cut(s) | 5601 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2779, 6594 |
| XbaI | TCTAGA | 2 cut(s) | 2249, 3599 |
| XceI | RCATGY | 8 cut(s) | 712, 1994, 3352, 5629, 5809, 6856, 6958, 6983 |
| XcmI | CCANNNNNNNNNTGG | 7 cut(s) | 407, 873, 3773, 4376, 6190, 6339, 6546 |
| XmaJI | CCTAGG | 1 cut(s) | 4763 |
| XmiI | GTMKAC | 4 cut(s) | 4004, 7045, 7203, 7548 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1060, 2417, 4388, 4837, 5660, 6170 |
| ZrmI | AGTACT | 1 cut(s) | 5170 |
| Zsp2I | ATGCAT | 1 cut(s) | 3354 |