Rorug02G0127900

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
11011447 .. 11018914
7468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0127900.1

Sequence Viewer

Length: 3051 bp
ATGGTGGCCATTGGTGAGGAGGAGCCAATGCAGGAGCCAGGCCACGGGGAGAGGATACTCGTTTCTGTTCGGCTGCGTCCTTTGAACGAGAAGGAGACTGCCAGGAATGATGTGTCGGATTGGGAATGTATTAATGACAACACTATCATATACAGGAACAACCTTTCCATTTCTGAGCGCTCCATGTACCCAACTGCCTACACATTCGACAGAGTATTTAGTACGGATTGCTCCACAAGGCGGGTGTATGAAGAAGGAGCCAAGAAAGTTGCTCTTTCAGTTGCCAGTGGTATAAACTCAAGTATTTTTGCATATGGACAAACAAGCAGTGGAAAGACATACACCATGAGTGGAATTACTGAGTACGCTGTTGCAGATTTATATGAGTATATAGATAAGCACGAGGAGAGAGAATTTGTTTTAAAATTTTCTGCTTTGGAGATCTACAACGAATCTGTTAGGGACCTTCTTAGTGCAGATACCACTCCCCTTAGGCTTCTGGATGATCCTGAGAGAGGTACAATTGTTGAAAAACTTACAGAGGAAACTCTAAGGGACTGGAATCATTTCAGAGAACTTCTATCTGTCTGCGAAGCTCAAAGACAGATAGGAGAAACATCTTTAAATGAAGCAAGCTCCAGATCTCATCAGATTCTCAGATTGGTAATAGAAAGTTCAGCACGTGAGTTTCTTGGCTATGACAAGTCAAGCTCCCTTACTGCTATGGTGAACTTTGTCGATCTTGCTGGAAGTGAGCGTGCATCCCAGACATTATCAGCTGGCACAAGGTTGAAAGAGGGTTGCCACATAAATCGCAGTTTACTAACTCTGGGCACTGTTATCCGTAAGCTGAGCAAGGGAAGAAATGGGCATATTCCTTACAGAGATTCAAAGCTAACCCGCATCCTACAGTCCTCCTTAGGAGGAAATGCTAGAACTGCCGTCATCTGTACTTTGAGTCCTGCACATAGCCATGTTGAGCAATCAAGAAACACCCTTTTGTTTGCAAGTTGTGCTAAAGAAGTGACAACAAATGCACAGGTTAATGTAGTCATGTCAGATAAAACATTGGTGAAGCATTTGCAAAAGCAATTGGCTAAATTAGAGAATGAGTTGAAATCTTCGGGATCAAAAATTGTTCCAGCTGATTCTTATACTCTACTGAGAGAAAAAGACCTTCAAATTGAAAAGCTTAAGAAAGAGGTGTCAGAGCTGACTCTGCAACGAGACCTTGCTCAGTCTCAGGTTAAGGATCTGGTACGAGTGCTTGAAGATGATAAACCATCACCAGCGGATTTGGATCGTTATTACCCCAAATTGCGAGTGCGAAATTCATGGGAGAACATTGAAATTCAACCATCAGCAATACCTGTTCTGGCTGGTTCTCACCACCGCCGAGGCAGTGTTAGATCTTTTTCTACATCTCAGTATTCAGATGTAGACAGTAGGACTAGTTCTGATGATACTTTACTCCAACTTCCGGACTTTGATGACAATTTCCTGATCCCACACACGTTCTCCTCCAGCCAGTTGCCAGTTAGATTTCCTAATTCCATTGATGCCAATCTTCATCAGGAGGAGAACAAAGAACAGTCTGATGTAAATTCAGAAGATGTTTGCAAAGAAGTTCGGTGCATTGAAATGGAAGAGTCGAGCACAAACAGATATGTAGCATCAAATATATCAGATTCAAGCAGAAGCAGATACCAAAACTCAAATCTGTCATCTCCTGCAGCAAACACACCTACCTCAGGATTGACAGTGGTTGAGAATGGAGATGGCACCAATAAAGAAATGCAGTCGCCCCTATTGAACCATAAAGGTTTTATAATTCAATCTCCTGAAAAGACATCTCAATGGCTCCCAGAGAAACAGATGTCTACCCCCTTGATCTACAAGTTAAGGCGGAGTAGAAGTTGTAAAGCAAGTCTTGTGACTACGTTCTCTTCATGTTGGCTTGAGATGGTAGAGAAGAATGAGAACACACCTTTGATTGAGTTTGAGAAAAGTTATAATGAGAGCACACCTCCAACCGAGTTTGAGAAAATTTTTGTAGGAAGGCCCAAGGGTCTGCAAAAGAAACTTCCTTCATTCAAGTATGATGATTCTCAGGCTTCTGCAAGAACTGCAGCAGCTTCTGATGAGTGTAAACTACAGAATACCGAATCCGCAACTAATGACGAGAGTATTGAAACAAGTTCTTTAGTTGAAGAAACAAAGGAAACAACCACAACTGATGACAAGACTACTGAAAGCAGTTCTTTAGTTGAAGAAACAAATGAAGTGACTACAACTAATGACAAGGCTACTGAAAGCAGTTCTCTAGTTGAAGGAACAAAGGAAATGGTGGACACCCAGTGCATTACTCAACTTGCTGATTCTATGGTACCGGAGACAGATACAAAGCCTATACCAGAGACAGGTTTAAGGCCCAATCCATCTACAAGGGATGTGAGAGATGTTGGCTTGGACCCAATGCCTATGGATGAGGAAAGCGATTCAATGTGGCCATCAGAATTCAAGAGGCTGCAAAGAGAGATTGTTGAACTTTGGCATGCTTGCAATGTGTCATTGGTTCACAGGACTTACTTCTTCCTGCTATTTAAAGGTGATCCAAGTGATTCTATATACATGGAGGTTGAGCTCAGGAGATTGTCCTTCCTCAAAGGCACATTTCTTAAGGGAGATCAAGCTTTGGAAGATGGTCTAACACCCGCTTCAAGCCTGAGGGCTTTATGCAGTGAGAGACACATGCTGAGCAAGCAAATGAGCAAGAGGCTCTCCAAAGATGAAAGAGATAACCTCTACCTGAAGTGGGGTATTGGGCTAAACTCAAAGAATAGGAGGTTGCAGTTGGCGAACCGCCTGTGGAGTGACACAAACAACATGGATCACATCGCAGATAGTGCCAATGTTGTTGCGAAGCTGGTTGGTTCAGTAGAGCCAGAGCAGGCTTTCAAGGAGATGTTTGGACTCAGATTTACACCTCGAGACACAATTACAAGGCGGAGATCTTACCGTTGGACAGAAAGTTTGAAGCATCTTGTTTAA

Protein Analysis

1016

Amino Acids

114.68

Weight (kDa)

5.49

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Microtub_bd PF16796 23 - 157 3.7e-20 Microtubule binding
Kinesin PF00225 24 - 342 4e-99 Kinesin motor domain
DUF3490 PF11995 839 - 997 4.8e-74 Domain of unknown function (DUF3490)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1829, 2013
Acc65I GGTACC 1 cut(s) 2386
AccB1I GGYRCC 2 cut(s) 1781, 2386
AccI GTMKAC 2 cut(s) 1440, 1880
AccIII TCCGGA 1 cut(s) 1480
AciI CCGC 9 cut(s) 241, 901, 1292, 1393, 1906, 2169, 2715, 2863, 3007
AclWI GGATC 7 cut(s) 500, 1135, 1260, 1308, 1498, 2606, 2898
AcoI YGGCCR 2 cut(s) 6, 2507
AcsI RAATTY 7 cut(s) 413, 425, 1330, 1350, 1603, 2046, 2516
AcuI CTGAAG 1 cut(s) 2831
AcvI CACGTG 1 cut(s) 683
AdeI CACNNNGTG 1 cut(s) 2358
AfaI GTAC 7 cut(s) 188, 223, 365, 520, 952, 1260, 2388
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 7 cut(s) 44, 240, 515, 1480, 1751, 2420, 2815
AflII CTTAAG 2 cut(s) 1193, 2678
AflIII ACRYGT 1 cut(s) 1512
AhlI ACTAGT 1 cut(s) 1451
AjnI CCWGG 2 cut(s) 37, 101
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
Alw21I GWGCWC 3 cut(s) 1658, 2024, 2646
Alw26I GTCTC 7 cut(s) 89, 1221, 1245, 2387, 2411, 2740, 2985
AlwI GGATC 7 cut(s) 500, 1135, 1260, 1308, 1498, 2606, 2898
AlwNI CAGNNNCTG 1 cut(s) 2138
Ama87I CYCGRG 1 cut(s) 2988
Aor13HI TCCGGA 1 cut(s) 1480
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 5 cut(s) 6, 40, 2060, 2429, 2507
ApeKI GCWGC 5 cut(s) 73, 1733, 2129, 2132, 2527
ApoI RAATTY 7 cut(s) 413, 425, 1330, 1350, 1603, 2046, 2516
ArsI GACNNNNNNTTYG 2 cut(s) 3016, 3048
AseI ATTAAT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 566
Asp718I GGTACC 1 cut(s) 2386
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 4 cut(s) 463, 2061, 2430, 2470
AsuHPI GGTGA 6 cut(s) 26, 739, 1084, 1278, 1379, 2621
AvaI CYCGRG 1 cut(s) 2988
AvaII GGWCC 2 cut(s) 463, 2470
AxyI CCTNAGG 4 cut(s) 491, 919, 1750, 2726
BaeGI GKGCMC 1 cut(s) 836
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BalI TGGCCA 2 cut(s) 8, 2509
BanI GGYRCC 2 cut(s) 1781, 2386
BanII GRGCYC 1 cut(s) 2646
BauI CACGAG 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 683
Bbv12I GWGCWC 3 cut(s) 1658, 2024, 2646
BbvI GCAGC 5 cut(s) 60, 1745, 2141, 2144, 2514
BccI CCATC 7 cut(s) 1291, 1366, 1772, 1957, 2446, 2518, 2696
BceAI ACGGC 1 cut(s) 926
BciT130I CCWGG 2 cut(s) 39, 103
BciVI GTATCC 1 cut(s) 48
BcoDI GTCTC 7 cut(s) 89, 1221, 1245, 2387, 2411, 2740, 2985
BcuI ACTAGT 1 cut(s) 1451
BfaI CTAG 3 cut(s) 933, 1452, 2324
BfmI CTRYAG 4 cut(s) 908, 1731, 2127, 2153
BfoI RGCGCY 1 cut(s) 181
BfrI CTTAAG 2 cut(s) 1193, 2678
BfuI GTATCC 1 cut(s) 48
BglII AGATCT 4 cut(s) 441, 641, 1409, 3011
BisI GCNGC 5 cut(s) 74, 1734, 2130, 2133, 2528
BlpI GCTNAGC 2 cut(s) 851, 2756
BlsI GCNGC 5 cut(s) 75, 1735, 2131, 2134, 2529
Bme1390I CCNGG 2 cut(s) 39, 103
Bme18I GGWCC 2 cut(s) 463, 2470
BmeT110I CYCGRG 1 cut(s) 2988
BmgT120I GGNCC 4 cut(s) 463, 2061, 2430, 2470
BmiI GGNNCC 8 cut(s) 24, 36, 259, 464, 1783, 1862, 2388, 2472
BmrFI CCNGG 2 cut(s) 39, 103
BmrI ACTGGG 1 cut(s) 2350
BmsI GCATC 4 cut(s) 770, 912, 1549, 1682
BmuI ACTGGG 1 cut(s) 2350
BplI GAGNNNNNCTC 4 cut(s) 2011, 2043, 2787, 2819
BpmI CTGGAG 2 cut(s) 622, 1507
Bpu10I CCTNAGC 1 cut(s) 2645
Bpu1102I GCTNAGC 2 cut(s) 851, 2756
BpuEI CTTGAG 2 cut(s) 283, 1979
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 2 cut(s) 1299, 1563
BsaI GGTCTC 1 cut(s) 1221
BsaJI CCNNGG 3 cut(s) 43, 1396, 2064
BsaWI WCCGGW 2 cut(s) 1480, 2389
BsaXI ACNNNNNCTCC 4 cut(s) 1502, 1532, 1900, 1930
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 240, 515, 1480, 1751, 2420, 2815
Bse1I ACTGG 5 cut(s) 285, 563, 1528, 1535, 2356
Bse21I CCTNAGG 4 cut(s) 491, 919, 1750, 2726
Bse3DI GCAATG 1 cut(s) 2569
Bse8I GATNNNNATC 2 cut(s) 1299, 1563
BseAI TCCGGA 1 cut(s) 1480
BseBI CCWGG 2 cut(s) 39, 103
BseDI CCNNGG 3 cut(s) 43, 1396, 2064
BseGI GGATG 5 cut(s) 508, 761, 903, 2455, 2491
BseJI GATNNNNATC 2 cut(s) 1299, 1563
BseLI CCNNNNNNNGG 7 cut(s) 44, 240, 515, 1480, 1751, 2420, 2815
BseMI GCAATG 1 cut(s) 2569
BseNI ACTGG 5 cut(s) 285, 563, 1528, 1535, 2356
BseRI GAGGAG 5 cut(s) 32, 35, 419, 1510, 1592
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 5 cut(s) 60, 1745, 2141, 2144, 2514
BsgI GTGCAG 2 cut(s) 495, 948
BshFI GGCC 5 cut(s) 8, 42, 2062, 2431, 2509
BshNI GGYRCC 2 cut(s) 1781, 2386
BsiHKAI GWGCWC 3 cut(s) 1658, 2024, 2646
BsiHKCI CYCGRG 1 cut(s) 2988
BsiSI CCGG 2 cut(s) 1481, 2390
BslFI GGGAC 2 cut(s) 476, 569
BslI CCNNNNNNNGG 7 cut(s) 44, 240, 515, 1480, 1751, 2420, 2815
BsmAI GTCTC 7 cut(s) 89, 1221, 1245, 2387, 2411, 2740, 2985
BsmFI GGGAC 2 cut(s) 476, 569
BsnI GGCC 5 cut(s) 8, 42, 2062, 2431, 2509
Bso31I GGTCTC 1 cut(s) 1221
BsoBI CYCGRG 1 cut(s) 2988
Bsp1286I GDGCHC 4 cut(s) 836, 1658, 2024, 2646
Bsp13I TCCGGA 1 cut(s) 1480
Bsp1720I GCTNAGC 2 cut(s) 851, 2756
BspACI CCGC 9 cut(s) 241, 901, 1292, 1393, 1906, 2169, 2715, 2863, 3007
BspANI GGCC 5 cut(s) 8, 42, 2062, 2431, 2509
BspEI TCCGGA 1 cut(s) 1480
BspLI GGNNCC 8 cut(s) 24, 36, 259, 464, 1783, 1862, 2388, 2472
BspMAI CTGCAG 2 cut(s) 1735, 2131
BspPI GGATC 7 cut(s) 500, 1135, 1260, 1308, 1498, 2606, 2898
BspT107I GGYRCC 2 cut(s) 1781, 2386
BspTI CTTAAG 2 cut(s) 1193, 2678
BspTNI GGTCTC 1 cut(s) 1221
BsrDI GCAATG 1 cut(s) 2569
BsrI ACTGG 5 cut(s) 285, 563, 1528, 1535, 2356
BssECI CCNNGG 3 cut(s) 43, 1396, 2064
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 2064
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 39, 103
Bst4CI ACNGT 6 cut(s) 838, 912, 1445, 1593, 1762, 3020
Bst6I CTCTTC 2 cut(s) 1641, 1951
BstAFI CTTAAG 2 cut(s) 1193, 2678
BstAPI GCANNNNNTGC 3 cut(s) 1013, 2126, 2906
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 634, 759, 781, 2556, 2560, 2762, 2952
BstDSI CCRYGG 1 cut(s) 43
BstENI CCTNNNNNAGG 2 cut(s) 513, 1749
BstF5I GGATG 5 cut(s) 508, 761, 903, 2455, 2491
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 7 cut(s) 89, 1221, 1245, 2387, 2411, 2740, 2985
BstMWI GCNNNNNNNGC 6 cut(s) 938, 1013, 1219, 2126, 2761, 2906
BstNI CCWGG 2 cut(s) 39, 103
BstNSI RCATGY 2 cut(s) 2558, 2755
BstSCI CCNGG 2 cut(s) 37, 101
BstSFI CTRYAG 4 cut(s) 908, 1731, 2127, 2153
BstSLI GKGCMC 1 cut(s) 836
BstV1I GCAGC 5 cut(s) 60, 1745, 2141, 2144, 2514
BstX2I RGATCY 5 cut(s) 441, 641, 1252, 1409, 3011
BstYI RGATCY 5 cut(s) 441, 641, 1252, 1409, 3011
Bsu36I CCTNAGG 4 cut(s) 491, 919, 1750, 2726
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 5 cut(s) 8, 42, 2062, 2431, 2509
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 2881
BtsCI GGATG 5 cut(s) 508, 761, 903, 2455, 2491
BtsI GCAGTG 3 cut(s) 334, 1408, 2746
BtsIMutI CAGTG 7 cut(s) 292, 334, 834, 1408, 1767, 2363, 2746
Cac8I GCNNGC 7 cut(s) 634, 759, 781, 2556, 2560, 2762, 2952
CaiI CAGNNNCTG 1 cut(s) 2138
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 4 cut(s) 463, 2061, 2430, 2470
CseI GACGC 1 cut(s) 65
Csp6I GTAC 7 cut(s) 187, 222, 364, 519, 951, 1259, 2387
CviQI GTAC 7 cut(s) 187, 222, 364, 519, 951, 1259, 2387
DraI TTTAAA 3 cut(s) 423, 624, 2605
DraIII CACNNNGTG 1 cut(s) 2358
EaeI YGGCCR 2 cut(s) 6, 2507
Eam1104I CTCTTC 2 cut(s) 1641, 1951
EarI CTCTTC 2 cut(s) 1641, 1951
EciI GGCGGA 2 cut(s) 1921, 3022
Ecl136II GAGCTC 1 cut(s) 2644
Eco130I CCWWGG 1 cut(s) 2064
Eco24I GRGCYC 1 cut(s) 2646
Eco31I GGTCTC 1 cut(s) 1221
Eco47I GGWCC 2 cut(s) 463, 2470
Eco47III AGCGCT 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 2644
Eco57I CTGAAG 1 cut(s) 2831
Eco72I CACGTG 1 cut(s) 683
Eco81I CCTNAGG 4 cut(s) 491, 919, 1750, 2726
Eco88I CYCGRG 1 cut(s) 2988
EcoICRI GAGCTC 1 cut(s) 2644
EcoNI CCTNNNNNAGG 2 cut(s) 513, 1749
EcoO109I RGGNCCY 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 2516
EcoRII CCWGG 2 cut(s) 37, 101
EcoT14I CCWWGG 1 cut(s) 2064
EcoT38I GRGCYC 1 cut(s) 2646
ErhI CCWWGG 1 cut(s) 2064
FalI AAGNNNNNCTT 6 cut(s) 258, 290, 1914, 1946, 2245, 2277
FaqI GGGAC 2 cut(s) 476, 569
FauI CCCGC 3 cut(s) 234, 908, 2722
FauNDI CATATG 1 cut(s) 313
FblI GTMKAC 2 cut(s) 1440, 1880
Fnu4HI GCNGC 5 cut(s) 74, 1734, 2130, 2133, 2528
FokI GGATG 5 cut(s) 515, 748, 890, 2462, 2498
FriOI GRGCYC 1 cut(s) 2646
Fsp4HI GCNGC 5 cut(s) 74, 1734, 2130, 2133, 2528
FspBI CTAG 3 cut(s) 933, 1452, 2324
GlaI GCGC 1 cut(s) 179
GluI GCNGC 5 cut(s) 74, 1734, 2130, 2133, 2528
GsuI CTGGAG 2 cut(s) 622, 1507
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 5 cut(s) 8, 42, 2062, 2431, 2509
HapII CCGG 2 cut(s) 1481, 2390
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 2 cut(s) 1190, 2691
HpaII CCGG 2 cut(s) 1481, 2390
HphI GGTGA 6 cut(s) 26, 739, 1084, 1278, 1379, 2621
Hpy166II GTNNAC 7 cut(s) 730, 821, 1441, 1881, 2150, 2350, 2578
Hpy8I GTNNAC 7 cut(s) 730, 821, 1441, 1881, 2150, 2350, 2578
HpyAV CCTTC 8 cut(s) 85, 248, 476, 1187, 2052, 2097, 2324, 2668
HpyCH4III ACNGT 6 cut(s) 838, 912, 1445, 1593, 1762, 3020
HpyCH4IV ACGT 3 cut(s) 682, 1514, 1940
HpyF10VI GCNNNNNNNGC 6 cut(s) 938, 1013, 1219, 2126, 2761, 2906
HpySE526I ACGT 3 cut(s) 682, 1514, 1940
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 1480
KpnI GGTACC 1 cut(s) 2390
LmnI GCTCC 8 cut(s) 22, 34, 185, 236, 257, 641, 716, 1866
Lsp1109I GCAGC 5 cut(s) 60, 1745, 2141, 2144, 2514
LweI GCATC 4 cut(s) 770, 912, 1549, 1682
MaeI CTAG 3 cut(s) 933, 1452, 2324
MaeII ACGT 3 cut(s) 682, 1514, 1940
MaeIII GTNAC 4 cut(s) 1024, 1933, 2284, 2873
MfeI CAATTG 2 cut(s) 522, 1091
MflI RGATCY 5 cut(s) 441, 641, 1252, 1409, 3011
MhlI GDGCHC 4 cut(s) 836, 1658, 2024, 2646
MlsI TGGCCA 2 cut(s) 8, 2509
MluNI TGGCCA 2 cut(s) 8, 2509
MlyI GAGTC 4 cut(s) 967, 1210, 1658, 2967
MmeI TCCRAC 4 cut(s) 96, 1498, 2054, 3002
Mox20I TGGCCA 2 cut(s) 8, 2509
MroI TCCGGA 1 cut(s) 1480
MroXI GAANNNNTTC 1 cut(s) 566
MscI TGGCCA 2 cut(s) 8, 2509
MslI CAYNNNNRTG 3 cut(s) 972, 1640, 1855
Msp20I TGGCCA 2 cut(s) 8, 2509
MspA1I CMGCKG 3 cut(s) 779, 1145, 1292
MspCI CTTAAG 2 cut(s) 1193, 2678
MspI CCGG 2 cut(s) 1481, 2390
MspR9I CCNGG 2 cut(s) 39, 103
MunI CAATTG 2 cut(s) 522, 1091
MvaI CCWGG 2 cut(s) 39, 103
MwoI GCNNNNNNNGC 6 cut(s) 938, 1013, 1219, 2126, 2761, 2906
NdeI CATATG 1 cut(s) 313
NlaIV GGNNCC 8 cut(s) 24, 36, 259, 464, 1783, 1862, 2388, 2472
NmeAIII GCCGAG 1 cut(s) 1421
NmuCI GTSAC 4 cut(s) 1024, 1933, 2284, 2873
NspI RCATGY 2 cut(s) 2558, 2755
PaeI GCATGC 1 cut(s) 2558
PaeR7I CTCGAG 1 cut(s) 2988
PdmI GAANNNNTTC 1 cut(s) 566
PkrI GCNGC 5 cut(s) 75, 1735, 2131, 2134, 2529
PleI GAGTC 4 cut(s) 966, 1210, 1657, 2967
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 4 cut(s) 966, 1210, 1657, 2967
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 463
PshBI ATTAAT 1 cut(s) 132
PsiI TTATAA 2 cut(s) 1829, 2013
Psp124BI GAGCTC 1 cut(s) 2646
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 37, 101
PspCI CACGTG 1 cut(s) 683
PspGI CCWGG 2 cut(s) 37, 101
PspN4I GGNNCC 8 cut(s) 24, 36, 259, 464, 1783, 1862, 2388, 2472
PspPI GGNCC 4 cut(s) 463, 2061, 2430, 2470
PspPPI RGGWCCY 1 cut(s) 463
PsrI GAACNNNNNNTAC 2 cut(s) 1438, 1470
PstI CTGCAG 2 cut(s) 1735, 2131
PstNI CAGNNNCTG 1 cut(s) 2138
PsuI RGATCY 5 cut(s) 441, 641, 1252, 1409, 3011
PvuII CAGCTG 2 cut(s) 779, 1145
RsaI GTAC 7 cut(s) 188, 223, 365, 520, 952, 1260, 2388
RsaNI GTAC 7 cut(s) 187, 222, 364, 519, 951, 1259, 2387
RseI CAYNNNNRTG 3 cut(s) 972, 1640, 1855
SacI GAGCTC 1 cut(s) 2646
SatI GCNGC 5 cut(s) 74, 1734, 2130, 2133, 2528
Sau96I GGNCC 4 cut(s) 463, 2061, 2430, 2470
SchI GAGTC 4 cut(s) 967, 1210, 1658, 2967
ScrFI CCNGG 2 cut(s) 39, 103
SduI GDGCHC 4 cut(s) 836, 1658, 2024, 2646
SfaNI GCATC 4 cut(s) 770, 912, 1549, 1682
SfcI CTRYAG 4 cut(s) 908, 1731, 2127, 2153
Sfr274I CTCGAG 1 cut(s) 2988
SinI GGWCC 2 cut(s) 463, 2470
SlaI CTCGAG 1 cut(s) 2988
SmiMI CAYNNNNRTG 3 cut(s) 972, 1640, 1855
SmlI CTYRAG 5 cut(s) 298, 1193, 1958, 2678, 2988
SmoI CTYRAG 5 cut(s) 298, 1193, 1958, 2678, 2988
SpeI ACTAGT 1 cut(s) 1451
SphI GCATGC 1 cut(s) 2558
SsiI CCGC 9 cut(s) 241, 901, 1292, 1393, 1906, 2169, 2715, 2863, 3007
SspMI CTAG 3 cut(s) 933, 1452, 2324
SstI GAGCTC 1 cut(s) 2646
StyD4I CCNGG 2 cut(s) 37, 101
StyI CCWWGG 1 cut(s) 2064
TaaI ACNGT 6 cut(s) 838, 912, 1445, 1593, 1762, 3020
TaiI ACGT 3 cut(s) 685, 1517, 1943
TaqI TCGA 4 cut(s) 207, 738, 1652, 2989
TatI WGTACW 1 cut(s) 950
TscAI CASTG 7 cut(s) 292, 334, 841, 1408, 1767, 2363, 2746
TseFI GTSAC 4 cut(s) 1024, 1933, 2284, 2873
TseI GCWGC 5 cut(s) 73, 1733, 2129, 2132, 2527
Tsp45I GTSAC 4 cut(s) 1024, 1933, 2284, 2873
TspDTI ATGAA 8 cut(s) 264, 642, 1323, 1559, 1938, 2079, 2295, 2805
TspGWI ACGGA 2 cut(s) 239, 833
TspRI CASTG 7 cut(s) 292, 334, 841, 1408, 1767, 2363, 2746
Vha464I CTTAAG 2 cut(s) 1193, 2678
VpaK11BI GGWCC 2 cut(s) 463, 2470
VspI ATTAAT 1 cut(s) 132
XagI CCTNNNNNAGG 2 cut(s) 513, 1749
XapI RAATTY 7 cut(s) 413, 425, 1330, 1350, 1603, 2046, 2516
XceI RCATGY 2 cut(s) 2558, 2755
XhoI CTCGAG 1 cut(s) 2988
XmiI GTMKAC 2 cut(s) 1440, 1880
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 3 cut(s) 933, 1452, 2324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.