Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16652011 .. 16652655

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCCTCGCGTTTGCCGAAAGAGCAGGAGCACGCAATCATGGTCTCCGCCCTTAAACAGGTCATCGGCGGCGGCGGCATTGCCTCCAGAAGCAGCGGACACTCTCCGCCAGCAGTTGAAGGTGGAAGTGGAACAAAGAAGGTTGTGATATCAATTTCGGATGGCGACACGTGCCAGGTCTGCAGGATCGACGGCTGCCTCGGCTGCGAGTTCTTCCCGCCAAGCAAGCAGGACAAAGGGAAGAGGATCAAGAAGGGCAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGGGACCCGCGGAGGGCTGTGAGGGTTTGGCTCGGGACTTTCAAGACGGCGGAGGAAGCGGCCAGGGCTTATGACAAGGCGGCGATCGAGTTCCGAGGAGAGAGAGCGAAGCTCAACTTCCCACTAACCAGTGAAGCTGGTACTACTAAAACTCCTATTAGTGCAGCATTGGCTAAGCAAAGCATGGAGACTAGTGAGGTCAATCTAGTCAACGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAAGGACAGAGCAGTGATGTTAAGGACGAAGACATCGATCGTTTCATCTGGGAAATGCTTAAAGATGACGACGGCGATGAAGATTTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

23.32

Weight (kDa)

8.29

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	87 - 136	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	10, 319, 524
AclWI	GGATC	2 cut(s)	194, 254
AcoI	YGGCCR	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	263, 451
AfiI	CCNNNNNNNGG	2 cut(s)	58, 322
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	119, 352
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	174, 371
AluBI	AGCT	3 cut(s)	421, 446, 642
AluI	AGCT	3 cut(s)	421, 446, 642
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	49, 491
AlwI	GGATC	2 cut(s)	194, 254
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	281, 369
ApeKI	GCWGC	4 cut(s)	93, 195, 204, 473
AspS9I	GGNCC	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	105, 182, 191, 485
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	4 cut(s)	208, 268, 372, 640
BciT130I	CCWGG	2 cut(s)	176, 373
BcoDI	GTCTC	2 cut(s)	49, 491
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	501, 515, 643
BfmI	CTRYAG	1 cut(s)	181
BlpI	GCTNAGC	1 cut(s)	483
Bme1390I	CCNGG	2 cut(s)	176, 373
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	314, 315
BmrFI	CCNGG	2 cut(s)	176, 373
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BpmI	CTGGAG	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	483
Bsa29I	ATCGAT	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	5 cut(s)	199, 284, 317, 372, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 322
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	176, 373
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	5 cut(s)	199, 284, 317, 372, 403
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	58, 322
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	105, 182, 191, 485
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	3 cut(s)	10, 319, 524
Bsh1285I	CGRYCG	2 cut(s)	396, 592
BshFI	GGCC	2 cut(s)	283, 371
BshVI	ATCGAT	1 cut(s)	588
BsiEI	CGRYCG	2 cut(s)	396, 592
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	326, 358
BslI	CCNNNNNNNGG	2 cut(s)	58, 322
BsmAI	GTCTC	2 cut(s)	49, 491
BsmFI	GGGAC	2 cut(s)	326, 358
BsnI	GGCC	2 cut(s)	283, 371
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	186, 246, 393, 589
Bsp1720I	GCTNAGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	283, 371
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	3 cut(s)	10, 319, 524
BspLI	GGNNCC	2 cut(s)	314, 315
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	2 cut(s)	194, 254
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	5 cut(s)	199, 284, 317, 372, 403
BssMI	GATC	4 cut(s)	186, 246, 393, 589
Bst2UI	CCWGG	2 cut(s)	176, 373
Bst6I	CTCTTC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	33, 111, 227
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	2 cut(s)	284, 317
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	3 cut(s)	10, 319, 524
BstKTI	GATC	4 cut(s)	189, 249, 396, 592
BstMAI	GTCTC	2 cut(s)	49, 491
BstMBI	GATC	4 cut(s)	186, 246, 393, 589
BstMCI	CGRYCG	2 cut(s)	396, 592
BstNI	CCWGG	2 cut(s)	176, 373
BstSCI	CCNGG	2 cut(s)	174, 371
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	3 cut(s)	10, 319, 524
BstV1I	GCAGC	4 cut(s)	105, 182, 191, 485
BstV2I	GAAGAC	1 cut(s)	588
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	283, 371
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	2 cut(s)	284, 317
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	445, 571
Cac8I	GCNNGC	3 cut(s)	33, 111, 227
Cfr13I	GGNCC	1 cut(s)	313
Cfr42I	CCGCGG	1 cut(s)	320
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	262, 450
CviAII	CATG	2 cut(s)	40, 493
CviQI	GTAC	2 cut(s)	262, 450
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	4 cut(s)	188, 248, 395, 591
DpnII	GATC	4 cut(s)	186, 246, 393, 589
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	4 cut(s)	37, 96, 317, 374
Eco31I	GGTCTC	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	313
Eco72I	CACGTG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	174, 371
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	2 cut(s)	43, 496
FaiI	YATR	3 cut(s)	41, 381, 494
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	326, 358
FatI	CATG	2 cut(s)	39, 492
FauI	CCCGC	2 cut(s)	225, 324
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	3 cut(s)	501, 515, 643
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	283, 371
Hin1II	CATG	2 cut(s)	43, 496
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	307, 544
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	160, 404
Hpy188III	TCNNGA	6 cut(s)	87, 250, 311, 343, 352, 548
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	2 cut(s)	194, 626
HpyAV	CCTTC	4 cut(s)	113, 133, 247, 548
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	183, 473
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	43, 496
KflI	GGGWCCC	1 cut(s)	313
KspI	CCGCGG	1 cut(s)	320
Kzo9I	GATC	4 cut(s)	186, 246, 393, 589
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	4 cut(s)	105, 182, 191, 485
MaeI	CTAG	3 cut(s)	501, 515, 643
MaeII	ACGT	1 cut(s)	170
MalI	GATC	4 cut(s)	188, 248, 395, 591
MboI	GATC	4 cut(s)	186, 246, 393, 589
MboII	GAAGA	5 cut(s)	205, 253, 563, 593, 644
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	1 cut(s)	153
MseI	TTAA	4 cut(s)	54, 573, 612, 638
MspA1I	CMGCKG	2 cut(s)	96, 319
MspR9I	CCNGG	2 cut(s)	176, 373
MvaI	CCWGG	2 cut(s)	176, 373
MvnI	CGCG	3 cut(s)	10, 319, 524
NdeII	GATC	4 cut(s)	186, 246, 393, 589
NlaIII	CATG	2 cut(s)	43, 496
NlaIV	GGNNCC	2 cut(s)	314, 315
NmeAIII	GCCGAG	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 585
PfeI	GAWTC	2 cut(s)	307, 544
Ple19I	CGATCG	2 cut(s)	396, 592
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	174, 371
PspCI	CACGTG	1 cut(s)	171
PspGI	CCWGG	2 cut(s)	174, 371
PspN4I	GGNNCC	2 cut(s)	314, 315
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	185
PvuI	CGATCG	2 cut(s)	396, 592
RsaI	GTAC	2 cut(s)	263, 451
RsaNI	GTAC	2 cut(s)	262, 450
SacII	CCGCGG	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	54, 573, 612, 638
Sau3AI	GATC	4 cut(s)	186, 246, 393, 589
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	176, 373
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	63, 124, 144, 173, 180, 423, 448, 510, 644
SfcI	CTRYAG	1 cut(s)	181
Sfr303I	CCGCGG	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	3 cut(s)	501, 515, 643
StyD4I	CCNGG	2 cut(s)	174, 371
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	189, 396, 588
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	6 cut(s)	72, 75, 78, 302, 371, 392
TfiI	GAWTC	2 cut(s)	307, 544
Tru1I	TTAA	4 cut(s)	54, 573, 612, 638
Tru9I	TTAA	4 cut(s)	54, 573, 612, 638
TscAI	CASTG	2 cut(s)	445, 571
TseI	GCWGC	4 cut(s)	93, 195, 204, 473
TspDTI	ATGAA	2 cut(s)	586, 645
TspRI	CASTG	2 cut(s)	445, 571
VpaK11BI	GGWCC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	56
XspI	CTAG	3 cut(s)	501, 515, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.