AT2G20350

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000568
Physical Location & Seq
Forward (+)
8784769 .. 8785447
679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20350.1

Sequence Viewer

Length: 477 bp
ATGGAAAATTCAGAAAATGTTCCCTCTTACGATCAAAACATCAATTTCACTCCTAATTTGACGAGAGATCAAGAACATGTGATCATGGTCTCTGCTTTGCAACAAGTAATATCCAACGTCGGAGGTGACACGAACTCGAATGCATGGGAAGCTGATCTTCCACCTTTGAACGCTGGCCCTTGTCCTCTTTGTAGTGTCACCGGCTGCTACGGTTGCGTCTTCCCACGACACGAGGCGATAATTAAGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAACCATCAGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTTGAAAGTAAGGAGATGGCTTGGAACGTTTCCAACAGCGGAGATGGCGGCTAAGGCTTACAACGATGCGGCGGCTGAGTTTGTCGGAAGAAGATCAGCAAGACGTGGCACAAAGAACGGAGAGGAAGCATCTACCAAGAAGACGACTGAGAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

9.08

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 86 - 135 7.3e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 296, 299, 356, 365, 386, 389
AclI AACGTT 1 cut(s) 344
AclWI GGATC 2 cut(s) 305, 318
AcsI RAATTY 1 cut(s) 7
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 169, 322
AjiI CACGTC 1 cut(s) 422
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 305, 318
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 137, 190
BamHI GGATCC 1 cut(s) 310
BauI CACGAG 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 211, 464
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 289, 327, 355
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 94
BisI GCNGC 5 cut(s) 205, 297, 366, 387, 390
BlsI GCNGC 5 cut(s) 206, 298, 367, 388, 391
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 312
BmsI GCATC 2 cut(s) 373, 455
BpiI GAAGAC 2 cut(s) 211, 464
Bpu10I CCTNAGC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 200
BseMII CTCAG 2 cut(s) 384, 456
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 6 cut(s) 31, 67, 81, 154, 310, 410
BspACI CCGC 6 cut(s) 296, 299, 356, 365, 386, 389
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 385, 457
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 2 cut(s) 305, 318
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 6 cut(s) 31, 67, 81, 154, 310, 410
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 3 cut(s) 369, 393, 465
BstKTI GATC 6 cut(s) 34, 70, 84, 157, 313, 413
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 6 cut(s) 31, 67, 81, 154, 310, 410
BstMWI GCNNNNNNNGC 4 cut(s) 149, 213, 362, 371
BstNSI RCATGY 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 2 cut(s) 211, 464
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 177
BtrI CACGTC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 205
CviAII CATG 3 cut(s) 77, 85, 144
CviJI RGCY 7 cut(s) 152, 177, 204, 337, 368, 374, 392
CviKI_1 RGCY 7 cut(s) 152, 177, 204, 337, 368, 374, 392
DdeI CTNAG 3 cut(s) 369, 393, 465
DpnI GATC 6 cut(s) 33, 69, 83, 156, 312, 412
DpnII GATC 6 cut(s) 31, 67, 81, 154, 310, 410
EciI GGCGGA 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 145
FaeI CATG 3 cut(s) 80, 88, 147
FaiI YATR 4 cut(s) 78, 86, 145, 307
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 3 cut(s) 76, 84, 143
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 205, 297, 366, 387, 390
Fsp4HI GCNGC 5 cut(s) 205, 297, 366, 387, 390
GluI GCNGC 5 cut(s) 205, 297, 366, 387, 390
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 80, 88, 147
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 137, 190
Hpy188I TCNGA 4 cut(s) 13, 122, 315, 404
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 3 cut(s) 117, 344, 421
HpyCH4V TGCA 2 cut(s) 100, 143
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 213, 362, 371
HpyF3I CTNAG 3 cut(s) 369, 393, 465
HpySE526I ACGT 3 cut(s) 117, 344, 421
Hsp92II CATG 3 cut(s) 80, 88, 147
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 6 cut(s) 31, 67, 81, 154, 310, 410
LpnPI CCDG 3 cut(s) 159, 214, 270
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 373, 455
MaeII ACGT 3 cut(s) 117, 344, 421
MaeIII GTNAC 2 cut(s) 125, 196
MalI GATC 6 cut(s) 33, 69, 83, 156, 312, 412
MboI GATC 6 cut(s) 31, 67, 81, 154, 310, 410
MboII GAAGA 6 cut(s) 149, 211, 265, 417, 420, 469
MflI RGATCY 1 cut(s) 310
MluCI AATT 5 cut(s) 7, 43, 55, 240, 472
MmeI TCCRAC 4 cut(s) 100, 138, 374, 382
MnlI CCTC 6 cut(s) 34, 116, 195, 226, 264, 433
Mph1103I ATGCAT 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 2 cut(s) 243, 475
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 149, 213, 362, 371
NdeII GATC 6 cut(s) 31, 67, 81, 154, 310, 410
NlaIII CATG 3 cut(s) 80, 88, 147
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 125, 196
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 206, 298, 367, 388, 391
PscI ACATGT 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 2 cut(s) 243, 475
SatI GCNGC 5 cut(s) 205, 297, 366, 387, 390
Sau3AI GATC 6 cut(s) 31, 67, 81, 154, 310, 410
Sau96I GGNCC 1 cut(s) 176
SetI ASST 7 cut(s) 120, 127, 154, 166, 289, 347, 424
SfaNI GCATC 2 cut(s) 373, 455
Sse9I AATT 5 cut(s) 7, 43, 55, 240, 472
SsiI CCGC 6 cut(s) 296, 299, 356, 365, 386, 389
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 3 cut(s) 120, 347, 424
TaqI TCGA 1 cut(s) 137
TasI AATT 5 cut(s) 7, 43, 55, 240, 472
TauI GCSGC 4 cut(s) 299, 368, 389, 392
Tru1I TTAA 2 cut(s) 243, 475
Tru9I TTAA 2 cut(s) 243, 475
TseFI GTSAC 2 cut(s) 125, 196
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 2 cut(s) 125, 196
TspGWI ACGGA 1 cut(s) 450
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.