Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004768.1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

47259 .. 47879

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004768.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgtggatttcttcttcccagctacactcggactcgaaaatgaaaagcagtgggagtaaaatgcccaaggagcaggagcacgctatcattgtctccgccctgaaacgggtaatccgcggtggcgttggcacaaacaatgcaccctcccagccaccgccgccgccgacgcacctcccagaaacgggtggctccgatcaaattgtgatacaattttcggattgtgatgacacgtgtcaggtatgtaatatggagattgatcattgccttggctgtggtttgttcccgccaagcgagcaagacaaaggtaaaaaggtgaagacgagcaagtacaggggagtgcggcagagaccaggaggaaaatgggcggcggagattcgggacccccgtcgcacggctcgcgtttggctcgggactttccagacggaggaggaggcagccagggcttatgacacgaaggccgtggaatttcgcggagctgacagagccaagctaaacttcccgccatcctcggacactggtactaccagtggagcaatgactgatgagaccaaagtccaaacaagtccagtcggagagagcagcactgctgaggaagaagaagaggaagagatggatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

206

Amino Acids

22.51

Weight (kDa)

5.35

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	117, 399, 471
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	329, 520
AfiI	CCNNNNNNNGG	6 cut(s)	105, 106, 181, 182, 391, 424
AflIII	ACRYGT	2 cut(s)	228, 230
AjnI	CCWGG	2 cut(s)	349, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	22, 476, 490
AluI	AGCT	3 cut(s)	22, 476, 490
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	3 cut(s)	97, 340, 539
AlwI	GGATC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	2 cut(s)	434, 579
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	613
BbrPI	CACGTG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	446, 591
BccI	CCATC	2 cut(s)	511, 604
BceAI	ACGGC	2 cut(s)	408, 443
BciT130I	CCWGG	2 cut(s)	351, 439
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	97, 340, 539
BisI	GCNGC	6 cut(s)	158, 161, 341, 366, 435, 580
BlsI	GCNGC	6 cut(s)	159, 162, 342, 367, 436, 581
Bme1390I	CCNGG	2 cut(s)	351, 439
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	4 cut(s)	190, 380, 381, 615
BmrFI	CCNGG	2 cut(s)	351, 439
BoxI	GACNNNNGTC	3 cut(s)	231, 384, 551
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	340, 539
BsaJI	CCNNGG	6 cut(s)	66, 115, 265, 438, 459, 507
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 106, 181, 182, 391, 424
Bse1I	ACTGG	3 cut(s)	520, 525, 566
Bse3DI	GCAATG	2 cut(s)	259, 540
BseBI	CCWGG	2 cut(s)	351, 439
BseDI	CCNNGG	6 cut(s)	66, 115, 265, 438, 459, 507
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	6 cut(s)	105, 106, 181, 182, 391, 424
BseMI	GCAATG	2 cut(s)	259, 540
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	3 cut(s)	520, 525, 566
BseRI	GAGGAG	2 cut(s)	440, 443
BseXI	GCAGC	2 cut(s)	446, 591
BseYI	CCCAGC	2 cut(s)	18, 147
Bsh1236I	CGCG	3 cut(s)	117, 399, 471
BshFI	GGCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	392, 424
BslI	CCNNNNNNNGG	6 cut(s)	105, 106, 181, 182, 391, 424
BsmAI	GTCTC	3 cut(s)	97, 340, 539
BsmFI	GGGAC	2 cut(s)	392, 424
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	2 cut(s)	340, 539
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	193, 256, 613
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	3 cut(s)	117, 399, 471
BspLI	GGNNCC	4 cut(s)	190, 380, 381, 615
BspPI	GGATC	1 cut(s)	608
BspTNI	GGTCTC	2 cut(s)	340, 539
BsrDI	GCAATG	2 cut(s)	259, 540
BsrI	ACTGG	3 cut(s)	520, 525, 566
BssECI	CCNNGG	6 cut(s)	66, 115, 265, 438, 459, 507
BssMI	GATC	3 cut(s)	193, 256, 613
BssT1I	CCWWGG	2 cut(s)	66, 265
Bst2UI	CCWGG	2 cut(s)	351, 439
Bst6I	CTCTTC	2 cut(s)	594, 600
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	81, 293, 397
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	2 cut(s)	115, 459
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	3 cut(s)	117, 399, 471
BstKTI	GATC	3 cut(s)	196, 259, 616
BstMAI	GTCTC	3 cut(s)	97, 340, 539
BstMBI	GATC	3 cut(s)	193, 256, 613
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 157, 166, 292, 396, 440, 482
BstNI	CCWGG	2 cut(s)	351, 439
BstPAI	GACNNNNGTC	3 cut(s)	231, 384, 551
BstSCI	CCNGG	2 cut(s)	349, 437
BstUI	CGCG	3 cut(s)	117, 399, 471
BstV1I	GCAGC	2 cut(s)	446, 591
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	2 cut(s)	115, 459
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	2 cut(s)	55, 582
BtsIMutI	CAGTG	4 cut(s)	55, 513, 532, 582
Cac8I	GCNNGC	3 cut(s)	81, 293, 397
Cfr13I	GGNCC	1 cut(s)	379
Cfr42I	CCGCGG	1 cut(s)	118
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	328, 519
CviQI	GTAC	2 cut(s)	328, 519
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	3 cut(s)	195, 258, 615
DpnII	GATC	3 cut(s)	193, 256, 613
Eam1104I	CTCTTC	2 cut(s)	594, 600
EarI	CTCTTC	2 cut(s)	594, 600
EciI	GGCGGA	2 cut(s)	85, 383
Eco130I	CCWWGG	2 cut(s)	66, 265
Eco31I	GGTCTC	2 cut(s)	340, 539
Eco47I	GGWCC	1 cut(s)	379
Eco72I	CACGTG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	349, 437
EcoT14I	CCWWGG	2 cut(s)	66, 265
ErhI	CCWWGG	2 cut(s)	66, 265
FaiI	YATR	3 cut(s)	241, 248, 447
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	392, 424
FauI	CCCGC	2 cut(s)	291, 507
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	6 cut(s)	158, 161, 341, 366, 435, 580
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	6 cut(s)	158, 161, 341, 366, 435, 580
GluI	GCNGC	6 cut(s)	158, 161, 341, 366, 435, 580
GsaI	CCCAGC	2 cut(s)	22, 151
HaeIII	GGCC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	32, 373
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	5 cut(s)	31, 193, 217, 511, 572
Hpy188III	TCNNGA	3 cut(s)	377, 409, 418
Hpy99I	CGWCG	2 cut(s)	169, 390
HpyAV	CCTTC	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 157, 166, 292, 396, 440, 482
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	193, 256, 613
LmnI	GCTCC	5 cut(s)	70, 76, 194, 473, 530
Lsp1109I	GCAGC	2 cut(s)	446, 591
MaeII	ACGT	1 cut(s)	230
MalI	GATC	3 cut(s)	195, 258, 615
MboI	GATC	3 cut(s)	193, 256, 613
MboII	GAAGA	7 cut(s)	3, 6, 328, 605, 608, 611, 617
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	198, 209, 464
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	9 cut(s)	154, 182, 347, 418, 421, 424, 517, 583, 595
MspA1I	CMGCKG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	351, 439
MvaI	CCWGG	2 cut(s)	351, 439
MvnI	CGCG	3 cut(s)	117, 399, 471
MwoI	GCNNNNNNNGC	7 cut(s)	70, 157, 166, 292, 396, 440, 482
NdeII	GATC	3 cut(s)	193, 256, 613
NlaIV	GGNNCC	4 cut(s)	190, 380, 381, 615
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	6 cut(s)	159, 162, 342, 367, 436, 581
PleI	GAGTC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	379
PshAI	GACNNNNGTC	3 cut(s)	231, 384, 551
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	349, 437
PspCI	CACGTG	1 cut(s)	231
PspFI	CCCAGC	2 cut(s)	18, 147
PspGI	CCWGG	2 cut(s)	349, 437
PspN4I	GGNNCC	4 cut(s)	190, 380, 381, 615
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	2 cut(s)	329, 520
RsaNI	GTAC	2 cut(s)	328, 519
SacII	CCGCGG	1 cut(s)	118
SatI	GCNGC	6 cut(s)	158, 161, 341, 366, 435, 580
Sau3AI	GATC	3 cut(s)	193, 256, 613
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	351, 439
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	24, 174, 233, 240, 307, 315, 478, 492
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	379
Sse9I	AATT	3 cut(s)	198, 209, 464
StyD4I	CCNGG	2 cut(s)	349, 437
StyI	CCWWGG	2 cut(s)	66, 265
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	35
TasI	AATT	3 cut(s)	198, 209, 464
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	4 cut(s)	160, 163, 343, 368
TfiI	GAWTC	1 cut(s)	373
TscAI	CASTG	4 cut(s)	55, 520, 532, 589
TseI	GCWGC	2 cut(s)	434, 579
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	2 cut(s)	437, 606
TspRI	CASTG	4 cut(s)	55, 520, 532, 589
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.