Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16456872 .. 16457910

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAAGCAGTGGGTCTCAAATGCCCTCGCGTTCCGGCCGTTTATCCAAGGAGCAGGAGCACGCTATCATTGTCTCCTCCCTGTTACGGGTAATCCGCGGTGGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGGTGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGAGACGTGTCAGGCATGTAATATGAAGATGGACGATTGCCTCGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGGAAAGGGAAAAAGATGAAGACAAGCAAGTACAGGAGAGTGCCGCAGAGATCGGGGGGAAAATGGGCGGCGGAGATTCGTGACCCTCGTCGCACGGTTCGGGGTTGGCTCGAGACGTTCCAGACGGAGGAGGAGGCAGCCACGGCTTATGATACGGCGGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCACTAAGCAGTGAAGCTGGTACTACTAGTGCAGCATTGACTACGCAAAGCATGGAGACTGGTGAGGTCAATCAAGTCGACGCGACTTCTGTGAAGTCAGCGAATCACGAAGAGGGACAGAGTAGTGATGTGAAGGACGAAGAAGTCCATCGCTTCATCTGGGAAATGCTTAAAGATCACGATGAAGATTTATTTTTAAGCATATGGGCAGTGGCGGAACATGAAAGTTATTTTTGGAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

26.65

Weight (kDa)

5.6

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 152	2.7e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AccB1I	GGYRCC	2 cut(s)	104, 167
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	555
AccII	CGCG	3 cut(s)	31, 99, 560
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	2 cut(s)	311, 499
AfiI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 406
AflIII	ACRYGT	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	503
AjiI	CACGTC	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	3 cut(s)	130, 469, 494
AluI	AGCT	3 cut(s)	130, 469, 494
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	21, 79, 197, 386, 527
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	127, 416, 509
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	389
BanI	GGYRCC	2 cut(s)	104, 167
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	139, 428, 521
BccI	CCATC	2 cut(s)	223, 633
BceAI	ACGGC	3 cut(s)	24, 438, 450
BcoDI	GTCTC	5 cut(s)	21, 79, 197, 386, 527
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	8 cut(s)	122, 125, 128, 323, 348, 417, 438, 510
BlsI	GCNGC	8 cut(s)	123, 126, 129, 324, 349, 418, 439, 511
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	106, 169
BoxI	GACNNNNGTC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	48, 97, 241, 420, 451
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 406
Bse1I	ACTGG	1 cut(s)	541
BseDI	CCNNGG	5 cut(s)	48, 97, 241, 420, 451
BseLI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 406
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	4 cut(s)	67, 422, 425, 468
BseX3I	CGGCCG	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	139, 428, 521
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	3 cut(s)	31, 99, 560
Bsh1285I	CGRYCG	2 cut(s)	40, 444
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	2 cut(s)	104, 167
BsiEI	CGRYCG	2 cut(s)	40, 444
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 406
BsmAI	GTCTC	5 cut(s)	21, 79, 197, 386, 527
BsmBI	CGTCTC	2 cut(s)	197, 386
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	172, 329, 441, 652
BspANI	GGCC	1 cut(s)	39
BspFNI	CGCG	3 cut(s)	31, 99, 560
BspLI	GGNNCC	2 cut(s)	106, 169
BspT107I	GGYRCC	2 cut(s)	104, 167
BspTNI	GGTCTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	5 cut(s)	48, 97, 241, 420, 451
BssMI	GATC	4 cut(s)	172, 329, 441, 652
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	63, 269
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	2 cut(s)	97, 420
BstFNI	CGCG	3 cut(s)	31, 99, 560
BstKTI	GATC	4 cut(s)	175, 332, 444, 655
BstMAI	GTCTC	5 cut(s)	21, 79, 197, 386, 527
BstMBI	GATC	4 cut(s)	172, 329, 441, 652
BstMCI	CGRYCG	2 cut(s)	40, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
BstNSI	RCATGY	1 cut(s)	219
BstPAI	GACNNNNGTC	1 cut(s)	366
BstUI	CGCG	3 cut(s)	31, 99, 560
BstV1I	GCAGC	3 cut(s)	139, 428, 521
BstV2I	GAAGAC	1 cut(s)	305
BstZI	CGGCCG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	97, 420
BtgZI	GCGATG	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	207
BtsI	GCAGTG	3 cut(s)	16, 493, 693
BtsIMutI	CAGTG	3 cut(s)	16, 493, 693
Cac8I	GCNNGC	2 cut(s)	63, 269
Cfr42I	CCGCGG	1 cut(s)	100
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	310, 498
CviAII	CATG	3 cut(s)	216, 529, 698
CviQI	GTAC	2 cut(s)	310, 498
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	4 cut(s)	174, 331, 443, 654
DpnII	GATC	4 cut(s)	172, 329, 441, 652
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	37
EagI	CGGCCG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	2 cut(s)	365, 707
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	2 cut(s)	197, 386
FaeI	CATG	3 cut(s)	219, 532, 701
FaiI	YATR	8 cut(s)	138, 217, 224, 429, 530, 680, 682, 699
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	3 cut(s)	215, 528, 697
FauI	CCCGC	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	680
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	8 cut(s)	122, 125, 128, 323, 348, 417, 438, 510
Fsp4HI	GCNGC	8 cut(s)	122, 125, 128, 323, 348, 417, 438, 510
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	8 cut(s)	122, 125, 128, 323, 348, 417, 438, 510
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	566
Hin1II	CATG	3 cut(s)	219, 532, 701
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	2 cut(s)	355, 580
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	196, 452
Hpy188III	TCNNGA	6 cut(s)	181, 359, 391, 400, 584, 656
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	2 cut(s)	372, 560
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	206, 395
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	2 cut(s)	206, 395
Hsp92II	CATG	3 cut(s)	219, 532, 701
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	172, 329, 441, 652
LmnI	GCTCC	3 cut(s)	52, 58, 135
Lsp1109I	GCAGC	3 cut(s)	139, 428, 521
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	206, 395
MaeIII	GTNAC	2 cut(s)	84, 359
MalI	GATC	4 cut(s)	174, 331, 443, 654
MboI	GATC	4 cut(s)	172, 329, 441, 652
MboII	GAAGA	5 cut(s)	238, 310, 599, 629, 674
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	182
MseI	TTAA	2 cut(s)	648, 674
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	3 cut(s)	31, 99, 560
MwoI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	4 cut(s)	172, 329, 441, 652
NlaIII	CATG	3 cut(s)	219, 532, 701
NlaIV	GGNNCC	2 cut(s)	106, 169
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	355, 580
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	123, 126, 129, 324, 349, 418, 439, 511
Ple19I	CGATCG	1 cut(s)	444
PshAI	GACNNNNGTC	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	106, 169
PvuI	CGATCG	1 cut(s)	444
RsaI	GTAC	2 cut(s)	311, 499
RsaNI	GTAC	2 cut(s)	310, 498
SacII	CCGCGG	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	648, 674
SatI	GCNGC	8 cut(s)	122, 125, 128, 323, 348, 417, 438, 510
Sau3AI	GATC	4 cut(s)	172, 329, 441, 652
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	132, 209, 398, 471, 496, 546
Sfr274I	CTCGAG	1 cut(s)	389
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	209, 398
TaqI	TCGA	3 cut(s)	390, 444, 555
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	5 cut(s)	124, 127, 325, 350, 440
TfiI	GAWTC	2 cut(s)	355, 580
Tru1I	TTAA	2 cut(s)	648, 674
Tru9I	TTAA	2 cut(s)	648, 674
TscAI	CASTG	3 cut(s)	16, 493, 693
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	3 cut(s)	127, 416, 509
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	6 cut(s)	17, 239, 311, 622, 675, 714
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	16, 493, 693
Van91I	CCANNNNNTGG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.