Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16410519 .. 16411247

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAAGCAGTGGGTCTCAAATGCCCTCGCATTCCGGCGGTTTATCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGTTACGGGTAGTCCGCGGTGGCACCACCCATCCACCGCCACCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGGTGGCACCGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGACACGTGTCAGGCATGTAATATGAAGATGGACGATTGCCTCGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGATCGGGGGGAAAATGGGTGGTGGAGATTCGTGACCCGCGTCTCACAGTTCGGGTTTGGCTCGGGACGTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCACTAAGCAGTGAAGCTGGTACTACTAGTGCAGCATTGACTACGCAAAGCACGGAGACTGGTGAGGTCAATCAAGTCGACGCGACTTCTGTGAAGTCAGCGAATCACGAAGAGGGACAGAGTAGTGATGTTAAGGACGAAGACATCCATCGATTCATCTGGGAAATGCTTAAAGATGATCATGAAGATTTATATTTAAGCATATGGGCAGTGGCGGAACATGAAAGTTATTTTTGGAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

242

Amino Acids

26.64

Weight (kDa)

5.4

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 154	1.4e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	104, 167, 173
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	3 cut(s)	99, 373, 566
AcvI	CACGTG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	317, 505
AfiI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 412
AflIII	ACRYGT	2 cut(s)	210, 212
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	3 cut(s)	130, 475, 500
AluI	AGCT	3 cut(s)	130, 475, 500
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	21, 79, 380, 533
Ama87I	CYCGRG	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	127, 422, 515
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	395
BanI	GGYRCC	3 cut(s)	104, 167, 173
BbrPI	CACGTG	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	311, 630
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	139, 434, 527
BccI	CCATC	3 cut(s)	120, 229, 639
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	427
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	4 cut(s)	21, 79, 380, 533
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	5 cut(s)	128, 329, 423, 444, 516
BlsI	GCNGC	5 cut(s)	129, 330, 424, 445, 517
Bme1390I	CCNGG	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	106, 169, 175
BmrFI	CCNGG	1 cut(s)	427
BoxI	GACNNNNGTC	2 cut(s)	213, 372
BpiI	GAAGAC	2 cut(s)	311, 630
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
Bsa29I	ATCGAT	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	48, 97, 247, 426, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 412
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	5 cut(s)	48, 97, 247, 426, 457
BseGI	GGATG	2 cut(s)	112, 627
BseLI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 412
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	3 cut(s)	428, 431, 474
BseXI	GCAGC	3 cut(s)	139, 434, 527
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	3 cut(s)	99, 373, 566
Bsh1285I	CGRYCG	1 cut(s)	450
BshNI	GGYRCC	3 cut(s)	104, 167, 173
BshVI	ATCGAT	1 cut(s)	634
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	36, 171
BslFI	GGGAC	2 cut(s)	412, 612
BslI	CCNNNNNNNGG	5 cut(s)	87, 88, 161, 164, 412
BsmAI	GTCTC	4 cut(s)	21, 79, 380, 533
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	412, 612
BsmI	GAATGC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	178, 335, 447, 661
BspDI	ATCGAT	1 cut(s)	634
BspFNI	CGCG	3 cut(s)	99, 373, 566
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	106, 169, 175
BspT107I	GGYRCC	3 cut(s)	104, 167, 173
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	5 cut(s)	48, 97, 247, 426, 457
BssMI	GATC	4 cut(s)	178, 335, 447, 661
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	63, 275
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	112, 627
BstFNI	CGCG	3 cut(s)	99, 373, 566
BstKTI	GATC	4 cut(s)	181, 338, 450, 664
BstMAI	GTCTC	4 cut(s)	21, 79, 380, 533
BstMBI	GATC	4 cut(s)	178, 335, 447, 661
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 274, 428
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	225
BstPAI	GACNNNNGTC	2 cut(s)	213, 372
BstSCI	CCNGG	1 cut(s)	425
BstUI	CGCG	3 cut(s)	99, 373, 566
BstV1I	GCAGC	3 cut(s)	139, 434, 527
BstV2I	GAAGAC	2 cut(s)	311, 630
Bsu15I	ATCGAT	1 cut(s)	634
BsuTUI	ATCGAT	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	112, 627
BtsI	GCAGTG	3 cut(s)	16, 499, 699
BtsIMutI	CAGTG	3 cut(s)	16, 499, 699
Cac8I	GCNNGC	2 cut(s)	63, 275
CciI	TCATGA	1 cut(s)	664
Cfr10I	RCCGGY	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	634
CseI	GACGC	2 cut(s)	362, 572
Csp6I	GTAC	2 cut(s)	316, 504
CviAII	CATG	3 cut(s)	222, 665, 704
CviJI	RGCY	8 cut(s)	130, 252, 394, 425, 431, 470, 475, 500
CviKI_1	RGCY	8 cut(s)	130, 252, 394, 425, 431, 470, 475, 500
CviQI	GTAC	2 cut(s)	316, 504
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	4 cut(s)	180, 337, 449, 663
DpnII	GATC	4 cut(s)	178, 335, 447, 661
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	67, 713
Eco130I	CCWWGG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	3 cut(s)	225, 668, 707
FaiI	YATR	9 cut(s)	138, 223, 230, 435, 666, 676, 686, 688, 705
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	2 cut(s)	412, 612
FatI	CATG	3 cut(s)	221, 664, 703
FauI	CCCGC	2 cut(s)	273, 378
FauNDI	CATATG	1 cut(s)	686
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	128, 329, 423, 444, 516
FokI	GGATG	2 cut(s)	99, 614
Fsp4HI	GCNGC	5 cut(s)	128, 329, 423, 444, 516
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	5 cut(s)	128, 329, 423, 444, 516
HapII	CCGG	2 cut(s)	36, 171
HgaI	GACGC	2 cut(s)	362, 572
Hin1II	CATG	3 cut(s)	225, 668, 707
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	361, 586, 636
HpaII	CCGG	2 cut(s)	36, 171
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	202, 458
Hpy188III	TCNNGA	6 cut(s)	187, 365, 397, 406, 590, 665
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	212, 401
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 274, 428
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	2 cut(s)	212, 401
Hsp92II	CATG	3 cut(s)	225, 668, 707
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	178, 335, 447, 661
LmnI	GCTCC	3 cut(s)	52, 58, 135
Lsp1109I	GCAGC	3 cut(s)	139, 434, 527
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	212, 401
MaeIII	GTNAC	3 cut(s)	84, 206, 365
MalI	GATC	4 cut(s)	180, 337, 449, 663
MboI	GATC	4 cut(s)	178, 335, 447, 661
MboII	GAAGA	5 cut(s)	244, 316, 605, 635, 680
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	182
MseI	TTAA	3 cut(s)	615, 654, 680
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	2 cut(s)	36, 171
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	427
MvnI	CGCG	3 cut(s)	99, 373, 566
MwoI	GCNNNNNNNGC	3 cut(s)	127, 274, 428
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	4 cut(s)	178, 335, 447, 661
NlaIII	CATG	3 cut(s)	225, 668, 707
NlaIV	GGNNCC	3 cut(s)	106, 169, 175
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	2 cut(s)	206, 365
NspI	RCATGY	1 cut(s)	225
PagI	TCATGA	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	361, 586, 636
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	129, 330, 424, 445, 517
Ple19I	CGATCG	1 cut(s)	450
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	213
PshAI	GACNNNNGTC	2 cut(s)	213, 372
Psp6I	CCWGG	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	106, 169, 175
PvuI	CGATCG	1 cut(s)	450
RsaI	GTAC	2 cut(s)	317, 505
RsaNI	GTAC	2 cut(s)	316, 504
SacII	CCGCGG	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	615, 654, 680
SatI	GCNGC	5 cut(s)	128, 329, 423, 444, 516
Sau3AI	GATC	4 cut(s)	178, 335, 447, 661
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	132, 215, 404, 477, 502, 552
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SpeI	ACTAGT	1 cut(s)	509
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	215, 404
TaqI	TCGA	3 cut(s)	450, 561, 634
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	331, 446
TfiI	GAWTC	3 cut(s)	361, 586, 636
Tru1I	TTAA	3 cut(s)	615, 654, 680
Tru9I	TTAA	3 cut(s)	615, 654, 680
TscAI	CASTG	3 cut(s)	16, 499, 699
TseFI	GTSAC	2 cut(s)	206, 365
TseI	GCWGC	3 cut(s)	127, 422, 515
Tsp45I	GTSAC	2 cut(s)	206, 365
TspDTI	ATGAA	6 cut(s)	17, 245, 317, 628, 681, 720
TspGWI	ACGGA	2 cut(s)	425, 551
TspRI	CASTG	3 cut(s)	16, 499, 699
Van91I	CCANNNNNTGG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.