Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

10953830 .. 10954481

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACGGAAATCACCAACCTGAGCTCCGACTTGACGGAGCTGATCCTCTCCTACCTCCCCATCCCGACCCTCGTCCGAGCCTCCACCGTCTGCAAGCTCTGGCAATCCATCATCTCCTCCACCACCTTCTCCGCCACGCAAACCCAAACCCAAACCCAATCCCACCCCTGGTTCTTCCTCTACGGCATCCACAACACCTCCTCCAAGAACAACCAGTCCTTCGCCTTCGACCCTCTCTCCAACCGCTGGCTCCGCCTCCCCACCCCCACCTTCCCTCCCCACCACTACTCCCACTCCTGCTTCCTCGGCGCCGACGGCTTCTTCCTCATCACCGCCCCCAACTTCACCTACTCCAGAATCCTCAAGCGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

9.14

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 41	3.7e-09	F-box domain
F-box-like	PF12937	11 - 41	1.4e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	246
AciI	CCGC	4 cut(s)	132, 244, 253, 333
AclWI	GGATC	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	309
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	168, 246
AjnI	CCWGG	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	24, 40, 97
AluI	AGCT	3 cut(s)	24, 40, 97
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	311, 369
AsuHPI	GGTGA	3 cut(s)	4, 322, 337
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	2 cut(s)	68, 116
BceAI	ACGGC	2 cut(s)	199, 331
BciT130I	CCWGG	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	312, 370
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	251, 310
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	167, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 246
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	167, 304
BseGI	GGATG	2 cut(s)	60, 186
BseLI	CCNNNNNNNGG	2 cut(s)	168, 246
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	106, 190
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	168, 246
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	4 cut(s)	132, 244, 253, 333
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	251, 310
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	167, 304
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	95, 248
BstDEI	CTNAG	2 cut(s)	20, 372
BstF5I	GGATG	2 cut(s)	60, 186
BstH2I	RGCGCY	2 cut(s)	312, 370
BstHHI	GCGC	2 cut(s)	311, 369
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 306, 315
BstNI	CCWGG	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	60, 186
Cac8I	GCNNGC	2 cut(s)	95, 248
CfoI	GCGC	2 cut(s)	311, 369
CviJI	RGCY	6 cut(s)	24, 40, 80, 97, 250, 318
CviKI_1	RGCY	6 cut(s)	24, 40, 80, 97, 250, 318
DdeI	CTNAG	2 cut(s)	20, 372
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EciI	GGCGGA	2 cut(s)	121, 242
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FokI	GGATG	2 cut(s)	47, 173
FriOI	GRGCYC	1 cut(s)	26
GlaI	GCGC	2 cut(s)	310, 368
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	2 cut(s)	312, 370
HhaI	GCGC	2 cut(s)	311, 369
Hin1I	GRCGYC	1 cut(s)	309
Hin6I	GCGC	2 cut(s)	309, 367
HinP1I	GCGC	2 cut(s)	309, 367
HinfI	GANTC	1 cut(s)	357
HphI	GGTGA	3 cut(s)	4, 322, 337
Hpy188I	TCNGA	2 cut(s)	28, 77
Hpy188III	TCNNGA	2 cut(s)	64, 354
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	4 cut(s)	136, 229, 235, 280
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 306, 315
HpyF3I	CTNAG	2 cut(s)	20, 372
Hsp92I	GRCGYC	1 cut(s)	309
HspAI	GCGC	2 cut(s)	309, 367
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	29, 37, 255
LpnPI	CCDG	8 cut(s)	32, 85, 154, 181, 227, 232, 310, 367
LweI	GCATC	1 cut(s)	195
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	166, 313
MhlI	GDGCHC	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	309
MmeI	TCCRAC	2 cut(s)	51, 264
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	252, 306, 315
NarI	GGCGCC	1 cut(s)	309
NdeII	GATC	1 cut(s)	42
NlaIV	GGNNCC	2 cut(s)	251, 310
NmeAIII	GCCGAG	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	246
PluTI	GGCGCC	1 cut(s)	312
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	251, 310
SacI	GAGCTC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	9 cut(s)	21, 26, 42, 57, 99, 128, 200, 272, 350
SfaNI	GCATC	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	4 cut(s)	132, 244, 253, 333
SspDI	GGCGCC	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	357
TspGWI	ACGGA	2 cut(s)	20, 50
Van91I	CCANNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.