Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16979659 .. 16980261

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAAAGCAATGGGACTGAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAAACAATGCACCCTCCCAGCCACCGCCGCCGCCGACGCAGCTCCCAGAAACGGGTGGCACCGATCAAATTGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAATATGGAGATGGATCGTTGCCTTGGCTGTGGTTTGTTCCCTCCAAGGGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCCCGTCGCTCGGTTCGCGTTTGGCTCGGGACTTTCCAGAGGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCATGGAATTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACCGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCCAGTTGGAGAGAGCAGCACTGCTGAGGAAGAAGAAGAGGAAGAGATGGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

21.94

Weight (kDa)

5.42

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	102 - 152	1.8e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	3 cut(s)	99, 381, 453
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	446
AcvI	CACGTG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	311, 502
AfiI	CCNNNNNNNGG	7 cut(s)	87, 88, 163, 164, 271, 373, 406
AflIII	ACRYGT	2 cut(s)	210, 212
AgeI	ACCGGT	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	331, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	3 cut(s)	154, 458, 472
AluI	AGCT	3 cut(s)	154, 458, 472
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	79, 322, 521
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	151, 416, 561
ApoI	RAATTY	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	163, 428, 573
BccI	CCATC	3 cut(s)	229, 493, 586
BciT130I	CCWGG	2 cut(s)	333, 421
BcoDI	GTCTC	3 cut(s)	79, 322, 521
BisI	GCNGC	7 cut(s)	140, 143, 152, 323, 348, 417, 562
BlsI	GCNGC	7 cut(s)	141, 144, 153, 324, 349, 418, 563
Bme1390I	CCNGG	2 cut(s)	333, 421
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	3 cut(s)	172, 362, 363
BmrFI	CCNGG	2 cut(s)	333, 421
BoxI	GACNNNNGTC	3 cut(s)	213, 366, 533
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	322, 521
BsaJI	CCNNGG	7 cut(s)	48, 97, 247, 269, 420, 441, 489
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 88, 163, 164, 271, 373, 406
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	507, 548
Bse3DI	GCAATG	2 cut(s)	16, 522
BseBI	CCWGG	2 cut(s)	333, 421
BseDI	CCNNGG	7 cut(s)	48, 97, 247, 269, 420, 441, 489
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	7 cut(s)	87, 88, 163, 164, 271, 373, 406
BseMI	GCAATG	2 cut(s)	16, 522
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	507, 548
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	3 cut(s)	163, 428, 573
BseYI	CCCAGC	1 cut(s)	129
Bsh1236I	CGCG	3 cut(s)	99, 381, 453
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	36, 498
BslFI	GGGAC	3 cut(s)	28, 374, 406
BslI	CCNNNNNNNGG	7 cut(s)	87, 88, 163, 164, 271, 373, 406
BsmAI	GTCTC	3 cut(s)	79, 322, 521
BsmFI	GGGAC	3 cut(s)	28, 374, 406
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	440
Bso31I	GGTCTC	2 cut(s)	322, 521
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	175, 238, 595
Bsp19I	CCATGG	1 cut(s)	441
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	3 cut(s)	99, 381, 453
BspLI	GGNNCC	3 cut(s)	172, 362, 363
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	2 cut(s)	322, 521
BsrDI	GCAATG	2 cut(s)	16, 522
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	507, 548
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	7 cut(s)	48, 97, 247, 269, 420, 441, 489
BssMI	GATC	3 cut(s)	175, 238, 595
BssT1I	CCWWGG	4 cut(s)	48, 247, 269, 441
Bst2UI	CCWGG	2 cut(s)	333, 421
Bst6I	CTCTTC	2 cut(s)	576, 582
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	2 cut(s)	97, 441
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	3 cut(s)	99, 381, 453
BstKTI	GATC	3 cut(s)	178, 241, 598
BstMAI	GTCTC	3 cut(s)	79, 322, 521
BstMBI	GATC	3 cut(s)	175, 238, 595
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 148, 151, 378, 422, 464
BstNI	CCWGG	2 cut(s)	333, 421
BstPAI	GACNNNNGTC	3 cut(s)	213, 366, 533
BstSCI	CCNGG	2 cut(s)	331, 419
BstUI	CGCG	3 cut(s)	99, 381, 453
BstV1I	GCAGC	3 cut(s)	163, 428, 573
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	2 cut(s)	97, 441
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	514, 564
Cac8I	GCNNGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	361
Cfr42I	CCGCGG	1 cut(s)	100
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	310, 501
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	2 cut(s)	310, 501
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	177, 240, 597
DpnII	GATC	3 cut(s)	175, 238, 595
Eam1104I	CTCTTC	2 cut(s)	576, 582
EarI	CTCTTC	2 cut(s)	576, 582
EciI	GGCGGA	2 cut(s)	67, 365
Eco130I	CCWWGG	4 cut(s)	48, 247, 269, 441
Eco31I	GGTCTC	2 cut(s)	322, 521
Eco47I	GGWCC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	331, 419
EcoT14I	CCWWGG	4 cut(s)	48, 247, 269, 441
ErhI	CCWWGG	4 cut(s)	48, 247, 269, 441
FaeI	CATG	1 cut(s)	445
FaiI	YATR	4 cut(s)	223, 230, 429, 443
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	3 cut(s)	28, 374, 406
FatI	CATG	1 cut(s)	441
FauI	CCCGC	1 cut(s)	489
Fnu4HI	GCNGC	7 cut(s)	140, 143, 152, 323, 348, 417, 562
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	7 cut(s)	140, 143, 152, 323, 348, 417, 562
GluI	GCNGC	7 cut(s)	140, 143, 152, 323, 348, 417, 562
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	2 cut(s)	36, 498
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	445
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	36, 498
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	199, 493
Hpy188III	TCNNGA	3 cut(s)	359, 391, 400
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	151, 372
HpyAV	CCTTC	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 148, 151, 378, 422, 464
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	445
KflI	GGGWCCC	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	175, 238, 595
LmnI	GCTCC	6 cut(s)	52, 58, 159, 274, 455, 512
Lsp1109I	GCAGC	3 cut(s)	163, 428, 573
MaeII	ACGT	1 cut(s)	212
MalI	GATC	3 cut(s)	177, 240, 597
MboI	GATC	3 cut(s)	175, 238, 595
MboII	GAAGA	5 cut(s)	310, 587, 590, 593, 599
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	180, 446
MmeI	TCCRAC	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	2 cut(s)	36, 498
MspR9I	CCNGG	2 cut(s)	333, 421
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	333, 421
MvnI	CGCG	3 cut(s)	99, 381, 453
MwoI	GCNNNNNNNGC	6 cut(s)	139, 148, 151, 378, 422, 464
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	175, 238, 595
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	3 cut(s)	172, 362, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	7 cut(s)	141, 144, 153, 324, 349, 418, 563
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	361
PshAI	GACNNNNGTC	3 cut(s)	213, 366, 533
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	331, 419
PspCI	CACGTG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	331, 419
PspN4I	GGNNCC	3 cut(s)	172, 362, 363
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	311, 502
RsaNI	GTAC	2 cut(s)	310, 501
SacII	CCGCGG	1 cut(s)	100
SatI	GCNGC	7 cut(s)	140, 143, 152, 323, 348, 417, 562
Sau3AI	GATC	3 cut(s)	175, 238, 595
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	333, 421
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	156, 215, 222, 289, 297, 460, 474
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	361
Sse9I	AATT	2 cut(s)	180, 446
StyD4I	CCNGG	2 cut(s)	331, 419
StyI	CCWWGG	4 cut(s)	48, 247, 269, 441
TaiI	ACGT	1 cut(s)	215
TasI	AATT	2 cut(s)	180, 446
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	4 cut(s)	142, 145, 325, 350
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	2 cut(s)	514, 571
TseI	GCWGC	3 cut(s)	151, 416, 561
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	514, 571
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.