Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

16320853 .. 16321455

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAAAGCAGTGGGAGTAAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAGTCCGCGGTGGCGTTGGCACAGACAATGCACCCTCCCAGCCACCACCGCCGTCGTCGCAGCTCCCAGCAACGGGTGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGATGACACATGTCAGGTATGTAAGATGGGGAAGGACGATTGCCTTGGCTGTGGTCTGTTCCCGCCAAGCGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGGGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCGCATCTCTCCGTTCGGCTTTGGCTCGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGTGGAGCTGACAGAGCCAAGCTAAACTTCCGGCCATCCTCGGACACTGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAACAGCGCTGCTGAGCAAGAACAAGAGGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

201

Amino Acids

21.42

Weight (kDa)

5.49

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	102 - 152	7.3e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	99
AciI	CCGC	9 cut(s)	39, 97, 99, 140, 266, 322, 347, 350, 365
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	482
AfaI	GTAC	2 cut(s)	311, 502
AfeI	AGCGCT	1 cut(s)	565
AfiI	CCNNNNNNNGG	5 cut(s)	87, 88, 163, 164, 406
AflIII	ACRYGT	1 cut(s)	212
AjnI	CCWGG	2 cut(s)	331, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	3 cut(s)	154, 458, 472
AluI	AGCT	3 cut(s)	154, 458, 472
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	79, 521
AlwI	GGATC	1 cut(s)	590
Ama87I	CYCGRG	2 cut(s)	389, 443
Aor51HI	AGCGCT	1 cut(s)	565
AoxI	GGCC	2 cut(s)	438, 482
ApeKI	GCWGC	3 cut(s)	151, 416, 566
AspLEI	GCGC	1 cut(s)	566
AspS9I	GGNCC	3 cut(s)	329, 361, 439
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	2 cut(s)	389, 443
AvaII	GGWCC	2 cut(s)	329, 361
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	163, 428, 553
BccI	CCATC	3 cut(s)	223, 493, 586
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	333, 421
BcoDI	GTCTC	2 cut(s)	79, 521
BfoI	RGCGCY	1 cut(s)	567
BisI	GCNGC	5 cut(s)	152, 323, 348, 417, 567
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	5 cut(s)	153, 324, 349, 418, 568
Bme1390I	CCNGG	2 cut(s)	333, 421
Bme18I	GGWCC	2 cut(s)	329, 361
BmeT110I	CYCGRG	2 cut(s)	389, 443
BmgT120I	GGNCC	3 cut(s)	329, 361, 439
BmiI	GGNNCC	5 cut(s)	172, 330, 362, 363, 597
BmrFI	CCNGG	2 cut(s)	333, 421
BmsI	GCATC	1 cut(s)	376
BoxI	GACNNNNGTC	2 cut(s)	213, 533
BpiI	GAAGAC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	5 cut(s)	48, 97, 247, 420, 489
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 88, 163, 164, 406
Bse1I	ACTGG	3 cut(s)	502, 507, 548
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	333, 421
BseDI	CCNNGG	5 cut(s)	48, 97, 247, 420, 489
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	5 cut(s)	87, 88, 163, 164, 406
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	3 cut(s)	502, 507, 548
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	3 cut(s)	163, 428, 553
BseYI	CCCAGC	2 cut(s)	129, 157
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	440, 484
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	2 cut(s)	389, 443
BsiSI	CCGG	2 cut(s)	36, 481
BslFI	GGGAC	3 cut(s)	342, 374, 406
BslI	CCNNNNNNNGG	5 cut(s)	87, 88, 163, 164, 406
BsmAI	GTCTC	2 cut(s)	79, 521
BsmFI	GGGAC	3 cut(s)	342, 374, 406
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	440, 484
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	2 cut(s)	389, 443
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	175, 595
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	9 cut(s)	39, 97, 99, 140, 266, 322, 347, 350, 365
BspANI	GGCC	2 cut(s)	440, 484
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	5 cut(s)	172, 330, 362, 363, 597
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	502, 507, 548
BssECI	CCNNGG	5 cut(s)	48, 97, 247, 420, 489
BssMI	GATC	2 cut(s)	175, 595
BssT1I	CCWWGG	2 cut(s)	48, 247
Bst2UI	CCWGG	2 cut(s)	333, 421
Bst6I	CTCTTC	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	63, 275
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	566
BstKTI	GATC	2 cut(s)	178, 598
BstMAI	GTCTC	2 cut(s)	79, 521
BstMBI	GATC	2 cut(s)	175, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
BstNI	CCWGG	2 cut(s)	333, 421
BstNSI	RCATGY	1 cut(s)	216
BstPAI	GACNNNNGTC	2 cut(s)	213, 533
BstSCI	CCNGG	2 cut(s)	331, 419
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	163, 428, 553
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	440, 484
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 495, 514
Cac8I	GCNNGC	2 cut(s)	63, 275
CfoI	GCGC	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	329, 361, 439
Cfr42I	CCGCGG	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	310, 501
CviAII	CATG	1 cut(s)	213
CviQI	GTAC	2 cut(s)	310, 501
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	177, 597
DpnII	GATC	2 cut(s)	175, 595
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	48, 247
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	329, 361
Eco47III	AGCGCT	1 cut(s)	565
Eco88I	CYCGRG	2 cut(s)	389, 443
EcoO109I	RGGNCCY	2 cut(s)	361, 439
EcoRII	CCWGG	2 cut(s)	331, 419
EcoT14I	CCWWGG	2 cut(s)	48, 247
ErhI	CCWWGG	2 cut(s)	48, 247
FaeI	CATG	1 cut(s)	216
FaiI	YATR	3 cut(s)	214, 223, 429
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	3 cut(s)	342, 374, 406
FatI	CATG	1 cut(s)	212
FauI	CCCGC	2 cut(s)	273, 372
Fnu4HI	GCNGC	5 cut(s)	152, 323, 348, 417, 567
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	5 cut(s)	152, 323, 348, 417, 567
GlaI	GCGC	1 cut(s)	565
GluI	GCNGC	5 cut(s)	152, 323, 348, 417, 567
GsaI	CCCAGC	2 cut(s)	133, 161
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	440, 484
HapII	CCGG	2 cut(s)	36, 481
HhaI	GCGC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	564
HinP1I	GCGC	1 cut(s)	564
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	36, 481
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	199, 493, 554
Hpy188III	TCNNGA	4 cut(s)	184, 359, 391, 400
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	148, 151
HpyAV	CCTTC	2 cut(s)	229, 430
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	564
KflI	GGGWCCC	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	175, 595
LmnI	GCTCC	5 cut(s)	52, 58, 159, 455, 512
Lsp1109I	GCAGC	3 cut(s)	163, 428, 553
LweI	GCATC	1 cut(s)	376
MalI	GATC	2 cut(s)	177, 597
MboI	GATC	2 cut(s)	175, 595
MboII	GAAGA	2 cut(s)	310, 599
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	9 cut(s)	37, 136, 329, 400, 403, 406, 452, 499, 577
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	2 cut(s)	36, 481
MspR9I	CCNGG	2 cut(s)	333, 421
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	333, 421
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
NdeII	GATC	2 cut(s)	175, 595
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	5 cut(s)	172, 330, 362, 363, 597
NspI	RCATGY	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	212
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	153, 324, 349, 418, 568
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	212
PshAI	GACNNNNGTC	2 cut(s)	213, 533
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	331, 419
PspFI	CCCAGC	2 cut(s)	129, 157
PspGI	CCWGG	2 cut(s)	331, 419
PspN4I	GGNNCC	5 cut(s)	172, 330, 362, 363, 597
PspPI	GGNCC	3 cut(s)	329, 361, 439
PspPPI	RGGWCCY	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	2 cut(s)	311, 502
RsaNI	GTAC	2 cut(s)	310, 501
SacII	CCGCGG	1 cut(s)	100
SatI	GCNGC	5 cut(s)	152, 323, 348, 417, 567
Sau3AI	GATC	2 cut(s)	175, 595
Sau96I	GGNCC	3 cut(s)	329, 361, 439
ScrFI	CCNGG	2 cut(s)	333, 421
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	156, 222, 289, 297, 460, 474
SfaNI	GCATC	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	443
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	329, 361
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SsiI	CCGC	9 cut(s)	39, 97, 99, 140, 266, 322, 347, 350, 365
StyD4I	CCNGG	2 cut(s)	331, 419
StyI	CCWWGG	2 cut(s)	48, 247
TaqI	TCGA	1 cut(s)	444
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	2 cut(s)	325, 350
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	3 cut(s)	16, 502, 514
TseI	GCWGC	3 cut(s)	151, 416, 566
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	364, 419, 588
TspRI	CASTG	3 cut(s)	16, 502, 514
VpaK11BI	GGWCC	2 cut(s)	329, 361
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.