Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16802934 .. 16803518

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAAAGCATTGGGACCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAGACAATGCACCCTCCCAGCCACCGCCGCCGTCGACGCAGCTCCCAGCAACGGGTGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGAAGATTGCCTTGGCTGTGGATTGTTCCCGCCAAGCGAGCAAGACACAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCCGCGGAGATTCGGGACCCGCGTCGCGCCGCTCGGGTTTGGCTCGGGACGTTCAAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCGTCCTGGGACACTGGTACTACCAGTGGAGCAATGGCTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGAGGAAGAAGAAGAAGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

20.9

Weight (kDa)

5.13

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	96 - 146	3.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	128
AccII	CGCG	5 cut(s)	81, 332, 349, 354, 435
AclWI	GGATC	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	293, 484
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	4 cut(s)	69, 70, 145, 146
AflIII	ACRYGT	2 cut(s)	192, 194
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	3 cut(s)	313, 401, 470
AjuI	GAANNNNNNNTTGG	4 cut(s)	213, 245, 443, 475
AluBI	AGCT	3 cut(s)	136, 440, 454
AluI	AGCT	3 cut(s)	136, 440, 454
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	61, 304, 503
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	3 cut(s)	360, 371, 425
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	327, 420
ApeKI	GCWGC	4 cut(s)	133, 398, 543, 548
AspLEI	GCGC	2 cut(s)	356, 548
AspS9I	GGNCC	4 cut(s)	15, 327, 343, 421
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	3 cut(s)	360, 371, 425
AvaII	GGWCC	2 cut(s)	15, 343
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	145, 410, 535, 555
BccI	CCATC	2 cut(s)	205, 568
BceAI	ACGGC	2 cut(s)	109, 451
BciT130I	CCWGG	3 cut(s)	315, 403, 472
BcoDI	GTCTC	3 cut(s)	61, 304, 503
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	8 cut(s)	122, 134, 305, 330, 357, 399, 544, 549
BlsI	GCNGC	8 cut(s)	123, 135, 306, 331, 358, 400, 545, 550
Bme1390I	CCNGG	3 cut(s)	315, 403, 472
Bme18I	GGWCC	2 cut(s)	15, 343
BmeT110I	CYCGRG	3 cut(s)	360, 371, 425
BmgT120I	GGNCC	4 cut(s)	15, 327, 343, 421
BmiI	GGNNCC	5 cut(s)	16, 154, 344, 345, 579
BmrFI	CCNGG	3 cut(s)	315, 403, 472
BoxI	GACNNNNGTC	3 cut(s)	195, 348, 515
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	195
BsaI	GGTCTC	2 cut(s)	304, 503
BsaJI	CCNNGG	6 cut(s)	30, 79, 229, 330, 402, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 70, 145, 146
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	3 cut(s)	484, 489, 530
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	315, 403, 472
BseDI	CCNNGG	6 cut(s)	30, 79, 229, 330, 402, 471
BseLI	CCNNNNNNNGG	4 cut(s)	69, 70, 145, 146
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	484, 489, 530
BseRI	GAGGAG	2 cut(s)	404, 407
BseXI	GCAGC	4 cut(s)	145, 410, 535, 555
BseYI	CCCAGC	2 cut(s)	111, 139
Bsh1236I	CGCG	5 cut(s)	81, 332, 349, 354, 435
BshFI	GGCC	2 cut(s)	329, 422
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	3 cut(s)	360, 371, 425
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	4 cut(s)	28, 356, 388, 488
BslI	CCNNNNNNNGG	4 cut(s)	69, 70, 145, 146
BsmAI	GTCTC	3 cut(s)	61, 304, 503
BsmFI	GGGAC	4 cut(s)	28, 356, 388, 488
BsnI	GGCC	2 cut(s)	329, 422
Bso31I	GGTCTC	2 cut(s)	304, 503
BsoBI	CYCGRG	3 cut(s)	360, 371, 425
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	157, 577
BspANI	GGCC	2 cut(s)	329, 422
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	5 cut(s)	81, 332, 349, 354, 435
BspLI	GGNNCC	5 cut(s)	16, 154, 344, 345, 579
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	2 cut(s)	304, 503
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	484, 489, 530
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	6 cut(s)	30, 79, 229, 330, 402, 471
BssMI	GATC	2 cut(s)	157, 577
BssT1I	CCWWGG	2 cut(s)	30, 229
Bst2UI	CCWGG	3 cut(s)	315, 403, 472
Bst6I	CTCTTC	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	45, 257
BstDEI	CTNAG	1 cut(s)	552
BstDSI	CCRYGG	2 cut(s)	79, 330
BstFNI	CGCG	5 cut(s)	81, 332, 349, 354, 435
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	356, 548
BstKTI	GATC	2 cut(s)	160, 580
BstMAI	GTCTC	3 cut(s)	61, 304, 503
BstMBI	GATC	2 cut(s)	157, 577
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 130, 256, 404, 446
BstNI	CCWGG	3 cut(s)	315, 403, 472
BstPAI	GACNNNNGTC	3 cut(s)	195, 348, 515
BstSCI	CCNGG	3 cut(s)	313, 401, 470
BstUI	CGCG	5 cut(s)	81, 332, 349, 354, 435
BstV1I	GCAGC	4 cut(s)	145, 410, 535, 555
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	329, 422
BtgI	CCRYGG	2 cut(s)	79, 330
BtsIMutI	CAGTG	2 cut(s)	477, 496
Cac8I	GCNNGC	2 cut(s)	45, 257
CfoI	GCGC	2 cut(s)	356, 548
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	4 cut(s)	15, 327, 343, 421
Cfr42I	CCGCGG	2 cut(s)	82, 333
CseI	GACGC	2 cut(s)	139, 338
Csp6I	GTAC	2 cut(s)	292, 483
CviQI	GTAC	2 cut(s)	292, 483
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	2 cut(s)	159, 579
DpnII	GATC	2 cut(s)	157, 577
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	30, 229
Eco31I	GGTCTC	2 cut(s)	304, 503
Eco47I	GGWCC	2 cut(s)	15, 343
Eco47III	AGCGCT	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	195
Eco88I	CYCGRG	3 cut(s)	360, 371, 425
EcoO109I	RGGNCCY	2 cut(s)	343, 421
EcoRII	CCWGG	3 cut(s)	313, 401, 470
EcoT14I	CCWWGG	2 cut(s)	30, 229
ErhI	CCWWGG	2 cut(s)	30, 229
FaiI	YATR	2 cut(s)	205, 411
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 443, 475
FaqI	GGGAC	4 cut(s)	28, 356, 388, 488
FauI	CCCGC	3 cut(s)	255, 354, 471
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	8 cut(s)	122, 134, 305, 330, 357, 399, 544, 549
Fsp4HI	GCNGC	8 cut(s)	122, 134, 305, 330, 357, 399, 544, 549
GlaI	GCGC	2 cut(s)	355, 547
GluI	GCNGC	8 cut(s)	122, 134, 305, 330, 357, 399, 544, 549
GsaI	CCCAGC	2 cut(s)	115, 143
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	329, 422
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	2 cut(s)	139, 338
HhaI	GCGC	2 cut(s)	356, 548
Hin6I	GCGC	2 cut(s)	354, 546
HinP1I	GCGC	2 cut(s)	354, 546
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	26, 129
Hpy188I	TCNGA	2 cut(s)	181, 536
Hpy188III	TCNNGA	4 cut(s)	166, 341, 373, 382
Hpy8I	GTNNAC	2 cut(s)	26, 129
Hpy99I	CGWCG	3 cut(s)	130, 133, 354
HpyAV	CCTTC	2 cut(s)	211, 412
HpyCH4IV	ACGT	2 cut(s)	194, 377
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 130, 256, 404, 446
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	194, 377
HspAI	GCGC	2 cut(s)	354, 546
KflI	GGGWCCC	1 cut(s)	343
KspI	CCGCGG	2 cut(s)	82, 333
Kzo9I	GATC	2 cut(s)	157, 577
LmnI	GCTCC	5 cut(s)	34, 40, 141, 437, 494
Lsp1109I	GCAGC	4 cut(s)	145, 410, 535, 555
MaeII	ACGT	2 cut(s)	194, 377
MalI	GATC	2 cut(s)	159, 579
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	157, 577
MboII	GAAGA	7 cut(s)	233, 292, 569, 572, 575, 578, 581
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	7 cut(s)	118, 311, 382, 385, 388, 434, 547
MspA1I	CMGCKG	2 cut(s)	81, 332
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	315, 403, 472
MvaI	CCWGG	3 cut(s)	315, 403, 472
MvnI	CGCG	5 cut(s)	81, 332, 349, 354, 435
MwoI	GCNNNNNNNGC	5 cut(s)	121, 130, 256, 404, 446
NdeII	GATC	2 cut(s)	157, 577
NlaIV	GGNNCC	5 cut(s)	16, 154, 344, 345, 579
PaeR7I	CTCGAG	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	8 cut(s)	123, 135, 306, 331, 358, 400, 545, 550
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
Ppu21I	YACGTR	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	343
PshAI	GACNNNNGTC	3 cut(s)	195, 348, 515
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	313, 401, 470
PspCI	CACGTG	1 cut(s)	195
PspFI	CCCAGC	2 cut(s)	111, 139
PspGI	CCWGG	3 cut(s)	313, 401, 470
PspN4I	GGNNCC	5 cut(s)	16, 154, 344, 345, 579
PspPI	GGNCC	4 cut(s)	15, 327, 343, 421
PspPPI	RGGWCCY	1 cut(s)	343
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	2 cut(s)	293, 484
RsaNI	GTAC	2 cut(s)	292, 483
SacII	CCGCGG	2 cut(s)	82, 333
SalI	GTCGAC	1 cut(s)	127
SatI	GCNGC	8 cut(s)	122, 134, 305, 330, 357, 399, 544, 549
Sau3AI	GATC	2 cut(s)	157, 577
Sau96I	GGNCC	4 cut(s)	15, 327, 343, 421
ScrFI	CCNGG	3 cut(s)	315, 403, 472
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	138, 197, 204, 271, 279, 380, 442, 456
Sfr274I	CTCGAG	1 cut(s)	425
Sfr303I	CCGCGG	2 cut(s)	82, 333
SgrBI	CCGCGG	2 cut(s)	82, 333
SgrDI	CGTCGACG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	15, 343
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	313, 401, 470
StyI	CCWWGG	2 cut(s)	30, 229
TaiI	ACGT	2 cut(s)	197, 380
TaqI	TCGA	2 cut(s)	128, 426
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	4 cut(s)	124, 307, 332, 359
TfiI	GAWTC	1 cut(s)	337
TscAI	CASTG	2 cut(s)	484, 496
TseI	GCWGC	4 cut(s)	133, 398, 543, 548
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	401, 570
TspRI	CASTG	2 cut(s)	484, 496
VpaK11BI	GGWCC	2 cut(s)	15, 343
XcmI	CCANNNNNNNNNTGG	2 cut(s)	321, 496
XhoI	CTCGAG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.