Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

14850163 .. 14850729

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1171300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCCTCCCGTATGAGTCGGATACAGCAGGAGCAGGAGCACTGCATCATGGTCGCCGCCCTCAAGCACGTAATCTCCGGTGGAAGCAGCAGCGGGCCTACCCCTGAGCACCCGCAGCCAATGACTGCCGTCTACAATGCCACGTGTACGCAATTGGCAGCGGGCCAACCGGCACAACAGGAGAAGGACATGCTGGCCGTCTTACTAGACGGGGACACGTGTCGCCTGTGCGGGATACCCGGGTGTCTCGGGTGCAACTACTTCCCGCCAACGTTGCCGAATCGAACCAAGAAGCCGCAGCTGAGTTTAGGAACCGGGTTTGCCGGGATGAATGTGGCGACTACGAGGAAGAGCAAGAACAAGTACAGGGGCGTGAGGCAGAGGCCGTGGGGGAAATGGGCCGCTGAGATTCGCGACCCACGGCGGGCGGCCAGGGTGTGGCTCGGGACGTTCGAGACGGCGGAGGAAGCGGCCAGGGCTTACGACAAGGCCGCCGTCGAGTTCCGCGGGAACAGGGCAAAGCTCAATTTCCCATTGAACCCGGACGGCAACATTGTCACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

9.5

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	121 - 170	4.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	414, 507
AclI	AACGTT	1 cut(s)	272
AcoI	YGGCCR	3 cut(s)	195, 429, 471
AcvI	CACGTG	2 cut(s)	144, 219
AfaI	GTAC	2 cut(s)	148, 365
AfiI	CCNNNNNNNGG	2 cut(s)	424, 438
AflIII	ACRYGT	3 cut(s)	143, 216, 218
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	431, 473
AluBI	AGCT	2 cut(s)	301, 523
AluI	AGCT	2 cut(s)	301, 523
Alw21I	GWGCWC	2 cut(s)	42, 111
Alw26I	GTCTC	2 cut(s)	251, 449
Ama87I	CYCGRG	3 cut(s)	239, 248, 443
AoxI	GGCC	8 cut(s)	95, 163, 195, 383, 399, 429, 471, 489
ApeKI	GCWGC	5 cut(s)	87, 90, 115, 158, 298
AspS9I	GGNCC	3 cut(s)	95, 163, 399
AsuC2I	CCSGG	5 cut(s)	240, 241, 316, 325, 542
AvaI	CYCGRG	3 cut(s)	239, 248, 443
BaeI	ACNNNNGTAYC	2 cut(s)	227, 260
BbrPI	CACGTG	2 cut(s)	144, 219
Bbv12I	GWGCWC	2 cut(s)	42, 111
BbvI	GCAGC	5 cut(s)	99, 102, 127, 170, 310
BceAI	ACGGC	7 cut(s)	113, 182, 370, 437, 474, 479, 562
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	433, 475
BciVI	GTATCC	2 cut(s)	15, 228
BcnI	CCSGG	5 cut(s)	240, 241, 316, 325, 542
BcoDI	GTCTC	2 cut(s)	251, 449
BfaI	CTAG	1 cut(s)	206
BfuI	GTATCC	2 cut(s)	15, 228
Bme1390I	CCNGG	7 cut(s)	240, 241, 316, 325, 433, 475, 542
BmeT110I	CYCGRG	3 cut(s)	239, 248, 443
BmgT120I	GGNCC	3 cut(s)	95, 163, 399
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	7 cut(s)	240, 241, 316, 325, 433, 475, 542
BmsI	GCATC	1 cut(s)	54
BoxI	GACNNNNGTC	2 cut(s)	128, 219
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	5 cut(s)	240, 241, 316, 325, 542
BsaAI	YACGTR	3 cut(s)	70, 144, 219
BsaJI	CCNNGG	6 cut(s)	239, 386, 419, 432, 474, 505
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 438
Bse118I	RCCGGY	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	433, 475
BseDI	CCNNGG	6 cut(s)	239, 386, 419, 432, 474, 505
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	424, 438
BseMII	CTCAG	4 cut(s)	96, 293, 396, 552
BseXI	GCAGC	5 cut(s)	99, 102, 127, 170, 310
Bsh1236I	CGCG	2 cut(s)	414, 507
BshFI	GGCC	8 cut(s)	97, 165, 197, 385, 401, 431, 473, 491
BsiHKAI	GWGCWC	2 cut(s)	42, 111
BsiHKCI	CYCGRG	3 cut(s)	239, 248, 443
BsiSI	CCGG	6 cut(s)	78, 170, 240, 315, 324, 542
BslFI	GGGAC	2 cut(s)	227, 460
BslI	CCNNNNNNNGG	2 cut(s)	424, 438
BsmAI	GTCTC	2 cut(s)	251, 449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	2 cut(s)	227, 460
BsnI	GGCC	8 cut(s)	97, 165, 197, 385, 401, 431, 473, 491
BsoBI	CYCGRG	3 cut(s)	239, 248, 443
Bsp1286I	GDGCHC	2 cut(s)	42, 111
Bsp68I	TCGCGA	1 cut(s)	414
BspANI	GGCC	8 cut(s)	97, 165, 197, 385, 401, 431, 473, 491
BspCNI	CTCAG	4 cut(s)	97, 294, 397, 553
BspFNI	CGCG	2 cut(s)	414, 507
BspLI	GGNNCC	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	6 cut(s)	239, 386, 419, 432, 474, 505
Bst2UI	CCWGG	2 cut(s)	433, 475
Bst6I	CTCTTC	1 cut(s)	344
BstBAI	YACGTR	3 cut(s)	70, 144, 219
BstC8I	GCNNGC	4 cut(s)	95, 163, 195, 426
BstDEI	CTNAG	4 cut(s)	105, 302, 405, 561
BstDSI	CCRYGG	3 cut(s)	386, 419, 505
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	2 cut(s)	414, 507
BstMAI	GTCTC	2 cut(s)	251, 449
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 274, 467, 476
BstNI	CCWGG	2 cut(s)	433, 475
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	2 cut(s)	128, 219
BstSCI	CCNGG	7 cut(s)	238, 239, 314, 323, 431, 473, 540
BstUI	CGCG	2 cut(s)	414, 507
BstV1I	GCAGC	5 cut(s)	99, 102, 127, 170, 310
BsuI	GTATCC	2 cut(s)	15, 228
BsuRI	GGCC	8 cut(s)	97, 165, 197, 385, 401, 431, 473, 491
BtgI	CCRYGG	3 cut(s)	386, 419, 505
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 558
BtuMI	TCGCGA	1 cut(s)	414
Cac8I	GCNNGC	4 cut(s)	95, 163, 195, 426
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	95, 163, 399
Cfr42I	CCGCGG	1 cut(s)	508
Cfr9I	CCCGGG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	147, 364
CviAII	CATG	2 cut(s)	49, 190
CviQI	GTAC	2 cut(s)	147, 364
DdeI	CTNAG	4 cut(s)	105, 302, 405, 561
EaeI	YGGCCR	3 cut(s)	195, 429, 471
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	476
Eco72I	CACGTG	2 cut(s)	144, 219
Eco88I	CYCGRG	3 cut(s)	239, 248, 443
EcoRII	CCWGG	2 cut(s)	431, 473
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	2 cut(s)	52, 193
FaiI	YATR	3 cut(s)	14, 50, 191
FaqI	GGGAC	2 cut(s)	227, 460
FatI	CATG	2 cut(s)	48, 189
FauI	CCCGC	7 cut(s)	86, 120, 154, 224, 273, 417, 500
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	340
FspBI	CTAG	1 cut(s)	206
HaeIII	GGCC	8 cut(s)	97, 165, 197, 385, 401, 431, 473, 491
HapII	CCGG	6 cut(s)	78, 170, 240, 315, 324, 542
Hin1II	CATG	2 cut(s)	52, 193
HinfI	GANTC	3 cut(s)	16, 280, 409
HpaII	CCGG	6 cut(s)	78, 170, 240, 315, 324, 542
Hpy166II	GTNNAC	2 cut(s)	133, 147
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	413, 445, 454
Hpy8I	GTNNAC	2 cut(s)	133, 147
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	5 cut(s)	69, 143, 218, 272, 449
HpyCH4V	TGCA	2 cut(s)	45, 255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 274, 467, 476
HpyF3I	CTNAG	4 cut(s)	105, 302, 405, 561
HpySE526I	ACGT	5 cut(s)	69, 143, 218, 272, 449
Hsp92II	CATG	2 cut(s)	52, 193
KspI	CCGCGG	1 cut(s)	508
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	2 cut(s)	31, 37
Lsp1109I	GCAGC	5 cut(s)	99, 102, 127, 170, 310
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	5 cut(s)	69, 143, 218, 272, 449
MaeIII	GTNAC	1 cut(s)	556
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	42, 111
MluCI	AATT	2 cut(s)	152, 526
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	16, 71, 339, 369, 375, 457
MspA1I	CMGCKG	5 cut(s)	93, 161, 301, 404, 507
MspI	CCGG	6 cut(s)	78, 170, 240, 315, 324, 542
MspR9I	CCNGG	7 cut(s)	240, 241, 316, 325, 433, 475, 542
MunI	CAATTG	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	433, 475
MvnI	CGCG	2 cut(s)	414, 507
MwoI	GCNNNNNNNGC	4 cut(s)	115, 274, 467, 476
NciI	CCSGG	5 cut(s)	240, 241, 316, 325, 542
NlaIII	CATG	2 cut(s)	52, 193
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	556
NruI	TCGCGA	1 cut(s)	414
NspI	RCATGY	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	280, 409
PflMI	CCANNNNNTGG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	24
PmaCI	CACGTG	2 cut(s)	144, 219
PmlI	CACGTG	2 cut(s)	144, 219
PpsI	GAGTC	1 cut(s)	24
Ppu21I	YACGTR	3 cut(s)	70, 144, 219
PshAI	GACNNNNGTC	2 cut(s)	128, 219
Psp1406I	AACGTT	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	431, 473
PspCI	CACGTG	2 cut(s)	144, 219
PspGI	CCWGG	2 cut(s)	431, 473
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	3 cut(s)	95, 163, 399
PvuII	CAGCTG	1 cut(s)	301
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	2 cut(s)	148, 365
RsaNI	GTAC	2 cut(s)	147, 364
SacII	CCGCGG	1 cut(s)	508
SapI	GCTCTTC	1 cut(s)	344
Sau96I	GGNCC	3 cut(s)	95, 163, 399
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	7 cut(s)	240, 241, 316, 325, 433, 475, 542
SduI	GDGCHC	2 cut(s)	42, 111
SetI	ASST	7 cut(s)	72, 146, 221, 275, 303, 452, 525
SfaNI	GCATC	1 cut(s)	54
Sfr303I	CCGCGG	1 cut(s)	508
SgrBI	CCGCGG	1 cut(s)	508
SmaI	CCCGGG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	152, 526
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	7 cut(s)	238, 239, 314, 323, 431, 473, 540
TaiI	ACGT	5 cut(s)	72, 146, 221, 275, 452
TaqI	TCGA	3 cut(s)	283, 453, 498
TasI	AATT	2 cut(s)	152, 526
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	6 cut(s)	59, 298, 404, 431, 473, 494
TfiI	GAWTC	2 cut(s)	280, 409
TscAI	CASTG	2 cut(s)	47, 565
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	5 cut(s)	87, 90, 115, 158, 298
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	344
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	2 cut(s)	47, 565
Van91I	CCANNNNNTGG	1 cut(s)	438
XceI	RCATGY	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.