Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8096516.1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

51 .. 575

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8096516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ctgaaacgggtaatccgcggtggcgttggcacagacaatgcaccctcccagccaccgccgccgtcgacgcagctcccagcaacgggtgacaccgatcaagtcgtgataccattttcggattgtgatgacacgtgtcaggtatgtaagatggggaaggacgattgccttggctgtggtttgttcccgccaagcgagcaagagctgcaagacaaaggtaaaaaggttaagacgagcaagtacaggggagtgcggcagagaccaggaggaaaatgggccgcggagattagggaccctcgtcgcgccgttcgggtttggctcgggacgttccagacggaggaggaggcagccagggcttatgacacgaaggccctccagtttcgaggagctgacagagccaagctaaacttcccgccgtcctgggacactggtactaccagcggagcaatggctgatgagaccaaagtccaaacaagtccagtcggagagagcagcgctgctgaggatgaggaagagatggatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

5.04

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	3 cut(s)	18, 278, 300
AclWI	GGATC	1 cut(s)	512
AcvI	CACGTG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	239, 430
AfeI	AGCGCT	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 334
AflIII	ACRYGT	2 cut(s)	129, 131
AjnI	CCWGG	3 cut(s)	259, 347, 416
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	73, 202, 386, 400
AluI	AGCT	4 cut(s)	73, 202, 386, 400
Alw26I	GTCTC	2 cut(s)	250, 449
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	317
Aor51HI	AGCGCT	1 cut(s)	493
AoxI	GGCC	2 cut(s)	273, 366
ApeKI	GCWGC	5 cut(s)	70, 202, 344, 489, 494
AspLEI	GCGC	2 cut(s)	302, 494
AspS9I	GGNCC	3 cut(s)	273, 289, 367
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	5 cut(s)	82, 189, 356, 481, 501
BccI	CCATC	2 cut(s)	142, 508
BceAI	ACGGC	3 cut(s)	46, 287, 397
BciT130I	CCWGG	3 cut(s)	261, 349, 418
BcoDI	GTCTC	2 cut(s)	250, 449
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	8 cut(s)	59, 71, 203, 251, 276, 345, 490, 495
BlsI	GCNGC	8 cut(s)	60, 72, 204, 252, 277, 346, 491, 496
Bme1390I	CCNGG	3 cut(s)	261, 349, 418
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	273, 289, 367
BmiI	GGNNCC	3 cut(s)	290, 291, 519
BmrFI	CCNGG	3 cut(s)	261, 349, 418
BoxI	GACNNNNGTC	3 cut(s)	132, 294, 461
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	250, 449
BsaJI	CCNNGG	5 cut(s)	16, 166, 276, 348, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 334
Bse1I	ACTGG	3 cut(s)	373, 430, 476
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	261, 349, 418
BseDI	CCNNGG	5 cut(s)	16, 166, 276, 348, 417
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 334
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	373, 430, 476
BseRI	GAGGAG	3 cut(s)	350, 353, 396
BseXI	GCAGC	5 cut(s)	82, 189, 356, 481, 501
BseYI	CCCAGC	2 cut(s)	48, 76
Bsh1236I	CGCG	3 cut(s)	18, 278, 300
BshFI	GGCC	2 cut(s)	275, 368
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	302, 334, 434
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 334
BsmAI	GTCTC	2 cut(s)	250, 449
BsmFI	GGGAC	3 cut(s)	302, 334, 434
BsnI	GGCC	2 cut(s)	275, 368
Bso31I	GGTCTC	2 cut(s)	250, 449
BsoBI	CYCGRG	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	94, 517
BspANI	GGCC	2 cut(s)	275, 368
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	3 cut(s)	18, 278, 300
BspLI	GGNNCC	3 cut(s)	290, 291, 519
BspPI	GGATC	1 cut(s)	512
BspTNI	GGTCTC	2 cut(s)	250, 449
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	373, 430, 476
BssECI	CCNNGG	5 cut(s)	16, 166, 276, 348, 417
BssMI	GATC	2 cut(s)	94, 517
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	261, 349, 418
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	16, 276
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	3 cut(s)	18, 278, 300
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	2 cut(s)	302, 494
BstKTI	GATC	2 cut(s)	97, 520
BstMAI	GTCTC	2 cut(s)	250, 449
BstMBI	GATC	2 cut(s)	94, 517
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 67, 193, 202, 350, 392
BstNI	CCWGG	3 cut(s)	261, 349, 418
BstPAI	GACNNNNGTC	3 cut(s)	132, 294, 461
BstSCI	CCNGG	3 cut(s)	259, 347, 416
BstUI	CGCG	3 cut(s)	18, 278, 300
BstV1I	GCAGC	5 cut(s)	82, 189, 356, 481, 501
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	275, 368
BtgI	CCRYGG	2 cut(s)	16, 276
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	2 cut(s)	302, 494
Cfr13I	GGNCC	3 cut(s)	273, 289, 367
Cfr42I	CCGCGG	2 cut(s)	19, 279
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	238, 429
CviQI	GTAC	2 cut(s)	238, 429
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	96, 519
DpnII	GATC	2 cut(s)	94, 517
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	250, 449
Eco47I	GGWCC	1 cut(s)	289
Eco47III	AGCGCT	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	289, 367
EcoRII	CCWGG	3 cut(s)	259, 347, 416
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaiI	YATR	2 cut(s)	142, 357
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	3 cut(s)	302, 334, 434
FauI	CCCGC	2 cut(s)	192, 417
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	8 cut(s)	59, 71, 203, 251, 276, 345, 490, 495
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	8 cut(s)	59, 71, 203, 251, 276, 345, 490, 495
GlaI	GCGC	2 cut(s)	301, 493
GluI	GCNGC	8 cut(s)	59, 71, 203, 251, 276, 345, 490, 495
GsaI	CCCAGC	2 cut(s)	52, 80
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	275, 368
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	302, 494
Hin6I	GCGC	2 cut(s)	300, 492
HinP1I	GCGC	2 cut(s)	300, 492
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	118, 482
Hpy188III	TCNNGA	3 cut(s)	103, 319, 328
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	67, 70, 300
HpyAV	CCTTC	2 cut(s)	148, 358
HpyCH4IV	ACGT	2 cut(s)	131, 323
HpyCH4V	TGCA	2 cut(s)	41, 205
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 67, 193, 202, 350, 392
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	2 cut(s)	131, 323
HspAI	GCGC	2 cut(s)	300, 492
KflI	GGGWCCC	1 cut(s)	289
KspI	CCGCGG	2 cut(s)	19, 279
Kzo9I	GATC	2 cut(s)	94, 517
LmnI	GCTCC	3 cut(s)	78, 383, 440
Lsp1109I	GCAGC	5 cut(s)	82, 189, 356, 481, 501
MaeII	ACGT	2 cut(s)	131, 323
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	96, 519
MboI	GATC	2 cut(s)	94, 517
MboII	GAAGA	1 cut(s)	521
MflI	RGATCY	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	460
MseI	TTAA	1 cut(s)	225
MspA1I	CMGCKG	3 cut(s)	18, 278, 438
MspR9I	CCNGG	3 cut(s)	261, 349, 418
MvaI	CCWGG	3 cut(s)	261, 349, 418
MvnI	CGCG	3 cut(s)	18, 278, 300
MwoI	GCNNNNNNNGC	6 cut(s)	58, 67, 193, 202, 350, 392
NdeII	GATC	2 cut(s)	94, 517
NlaIV	GGNNCC	3 cut(s)	290, 291, 519
NmuCI	GTSAC	1 cut(s)	86
PkrI	GCNGC	8 cut(s)	60, 72, 204, 252, 277, 346, 491, 496
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	289
PshAI	GACNNNNGTC	3 cut(s)	132, 294, 461
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	259, 347, 416
PspCI	CACGTG	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	48, 76
PspGI	CCWGG	3 cut(s)	259, 347, 416
PspN4I	GGNNCC	3 cut(s)	290, 291, 519
PspPI	GGNCC	3 cut(s)	273, 289, 367
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	239, 430
RsaNI	GTAC	2 cut(s)	238, 429
SacII	CCGCGG	2 cut(s)	19, 279
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	8 cut(s)	59, 71, 203, 251, 276, 345, 490, 495
Sau3AI	GATC	2 cut(s)	94, 517
Sau96I	GGNCC	3 cut(s)	273, 289, 367
ScrFI	CCNGG	3 cut(s)	261, 349, 418
SetI	ASST	9 cut(s)	75, 134, 141, 204, 217, 225, 326, 388, 402
Sfr303I	CCGCGG	2 cut(s)	19, 279
SgrBI	CCGCGG	2 cut(s)	19, 279
SgrDI	CGTCGACG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	289
StyD4I	CCNGG	3 cut(s)	259, 347, 416
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	2 cut(s)	134, 326
TaqI	TCGA	2 cut(s)	65, 379
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	3 cut(s)	61, 253, 278
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	5 cut(s)	70, 202, 344, 489, 494
Tsp45I	GTSAC	1 cut(s)	86
TspGWI	ACGGA	2 cut(s)	347, 510
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	267, 442
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.