Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16879235 .. 16879774

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAGTCGCATTCCGGCTGTTTACCCAAGGCGCAGGAGCACGCTGTCATTGTCTCCGCCCTGAAATGGGTAATCCGAGGTGGCACCCAGCCGCCGCCATCGACCCCTAATTCTGCCACATCATCGCTTCCTCCAACGGGTGGCACCAATCAAGTCGTGATACCATTTTTGGATTGTGTCACGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGGAAAGGGAAAAAGATGAAGACGAGCAACTACAGGGGGGTTCGGCAAAGACCAGGGGGCAAATGGGTGGCGGAGATTCGGGACCGGCGTCGCGCGGTTCGGCTTTGGCTTGGGACTTTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGACAGAGCTAAGCTCAACTTCCCGCCATCCTCGGACACTGGTTCTACCAGTGGAGCAATGACTGATGATCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

9.44

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	94 - 144	2.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 143
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	2 cut(s)	348, 350
AciI	CCGC	9 cut(s)	57, 92, 95, 236, 326, 350, 383, 413, 458
AclWI	GGATC	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 137, 140
AflIII	ACRYGT	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	307, 395
AluBI	AGCT	3 cut(s)	434, 443, 448
AluI	AGCT	3 cut(s)	434, 443, 448
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	533
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	392, 529, 534
AspLEI	GCGC	3 cut(s)	34, 350, 534
AspS9I	GGNCC	2 cut(s)	337, 415
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	2 cut(s)	83, 143
BbrPI	CACGTG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	404, 521
BccI	CCATC	3 cut(s)	106, 199, 469
BceAI	ACGGC	2 cut(s)	396, 426
BciT130I	CCWGG	2 cut(s)	309, 397
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	535
BisI	GCNGC	6 cut(s)	92, 95, 393, 414, 530, 535
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	6 cut(s)	93, 96, 394, 415, 531, 536
Bme1390I	CCNGG	2 cut(s)	309, 397
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	337, 415
BmiI	GGNNCC	3 cut(s)	85, 145, 338
BmrFI	CCNGG	2 cut(s)	309, 397
BoxI	GACNNNNGTC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
Bpu1102I	GCTNAGC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	6 cut(s)	27, 76, 217, 308, 396, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 137, 140
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	478, 483, 516
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	309, 397
BseDI	CCNNGG	6 cut(s)	27, 76, 217, 308, 396, 465
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 137, 140
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	478, 483, 516
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	404, 521
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	2 cut(s)	348, 350
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	83, 143
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	15, 340
BslFI	GGGAC	2 cut(s)	350, 382
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 137, 140
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	350, 382
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	502
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	9 cut(s)	57, 92, 95, 236, 326, 350, 383, 413, 458
BspANI	GGCC	1 cut(s)	416
BspFNI	CGCG	2 cut(s)	348, 350
BspLI	GGNNCC	3 cut(s)	85, 145, 338
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	2 cut(s)	83, 143
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	478, 483, 516
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	6 cut(s)	27, 76, 217, 308, 396, 465
BssMI	GATC	1 cut(s)	502
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	27, 217
Bst2UI	CCWGG	2 cut(s)	309, 397
BstACI	GRCGYC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	42, 245
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	2 cut(s)	348, 350
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	3 cut(s)	34, 350, 534
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 389, 398, 440
BstNI	CCWGG	2 cut(s)	309, 397
BstPAI	GACNNNNGTC	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	307, 395
BstSFI	CTRYAG	1 cut(s)	286
BstUI	CGCG	2 cut(s)	348, 350
BstV1I	GCAGC	2 cut(s)	404, 521
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	471, 490
Cac8I	GCNNGC	2 cut(s)	42, 245
CfoI	GCGC	3 cut(s)	34, 350, 534
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	337, 415
CseI	GACGC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
EciI	GGCGGA	3 cut(s)	46, 341, 398
Eco130I	CCWWGG	2 cut(s)	27, 217
Eco47I	GGWCC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	533
Eco72I	CACGTG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	307, 395
EcoT14I	CCWWGG	2 cut(s)	27, 217
ErhI	CCWWGG	2 cut(s)	27, 217
FaiI	YATR	3 cut(s)	193, 200, 405
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	350, 382
FauI	CCCGC	2 cut(s)	243, 465
Fnu4HI	GCNGC	6 cut(s)	92, 95, 393, 414, 530, 535
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	6 cut(s)	92, 95, 393, 414, 530, 535
GlaI	GCGC	3 cut(s)	33, 349, 533
GluI	GCNGC	6 cut(s)	92, 95, 393, 414, 530, 535
GsaI	CCCAGC	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	15, 340
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	3 cut(s)	34, 350, 534
Hin1I	GRCGYC	1 cut(s)	343
Hin6I	GCGC	3 cut(s)	32, 348, 532
HinP1I	GCGC	3 cut(s)	32, 348, 532
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	15, 340
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	77, 378, 469, 522
Hpy188III	TCNNGA	2 cut(s)	157, 335
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 389, 398, 440
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	1 cut(s)	343
HspAI	GCGC	3 cut(s)	32, 348, 532
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	3 cut(s)	37, 431, 488
Lsp1109I	GCAGC	2 cut(s)	404, 521
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	2 cut(s)	214, 286
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	158, 500
MnlI	CCTC	6 cut(s)	71, 141, 379, 382, 428, 475
MspI	CCGG	2 cut(s)	15, 340
MspR9I	CCNGG	2 cut(s)	309, 397
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	309, 397
MvnI	CGCG	2 cut(s)	348, 350
MwoI	GCNNNNNNNGC	4 cut(s)	244, 389, 398, 440
NdeII	GATC	1 cut(s)	502
NlaIV	GGNNCC	3 cut(s)	85, 145, 338
NmuCI	GTSAC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	93, 96, 394, 415, 531, 536
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	183
PshAI	GACNNNNGTC	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	307, 395
PspCI	CACGTG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	307, 395
PspN4I	GGNNCC	3 cut(s)	85, 145, 338
PspPI	GGNCC	2 cut(s)	337, 415
PspXI	VCTCGAGB	1 cut(s)	419
SatI	GCNGC	6 cut(s)	92, 95, 393, 414, 530, 535
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	2 cut(s)	337, 415
ScrFI	CCNGG	2 cut(s)	309, 397
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	82, 185, 192, 436, 445, 450
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	9 cut(s)	57, 92, 95, 236, 326, 350, 383, 413, 458
StyD4I	CCNGG	2 cut(s)	307, 395
StyI	CCWWGG	2 cut(s)	27, 217
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	101, 420
TasI	AATT	1 cut(s)	109
TauI	GCSGC	3 cut(s)	94, 97, 416
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	2 cut(s)	478, 490
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	392, 529, 534
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	215, 287
TspRI	CASTG	2 cut(s)	478, 490
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XhoI	CTCGAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.