RLG00000017424

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000568
Physical Location & Seq
Reverse (-)
16529740 .. 16530329
590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017424

Sequence Viewer

Length: 489 bp
ATGAAAAGCAGTGGGACTGAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATCGCCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAGACAATGCACCCTCCCAGCCACCGTCGCCGTCGACGCAGCTCCCAGAAACGGGTGGCACCAATCAAGTTGTGATACCATTTTCGGATTGTGATGACACGTGTCAGAGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCACATCTCGCCGTTCGGCTTTGGCTCGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCATATCACACGAAGGCCCTCGAGTTTCGCGGAGCCGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACTGGTTCTACCAGTAGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCTAGTCGGAGAGAACAGCGCTGCTGAGGAAGAAGAAGAGGAAGAGAAGGATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

163

Amino Acids

17.47

Weight (kDa)

4.86

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 140
AccII CGCG 2 cut(s) 93, 339
AciI CCGC 7 cut(s) 39, 91, 93, 233, 236, 339, 368
AclWI GGATC 1 cut(s) 476
AcvI CACGTG 1 cut(s) 207
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 5 cut(s) 81, 82, 157, 158, 292
AflIII ACRYGT 2 cut(s) 204, 206
AjnI CCWGG 2 cut(s) 217, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 2 cut(s) 148, 358
AluI AGCT 2 cut(s) 148, 358
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 208, 407
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 2 cut(s) 275, 329
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 145, 302, 452
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 247, 325
AvaI CYCGRG 2 cut(s) 275, 329
AvaII GGWCC 1 cut(s) 247
BamHI GGATCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 164
BbrPI CACGTG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 157, 314, 439
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 121, 245
BciT130I CCWGG 2 cut(s) 219, 307
BcoDI GTCTC 2 cut(s) 208, 407
BfaI CTAG 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 4 cut(s) 146, 234, 303, 453
BlsI GCNGC 4 cut(s) 147, 235, 304, 454
Bme1390I CCNGG 2 cut(s) 219, 307
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 2 cut(s) 275, 329
BmgT120I GGNCC 2 cut(s) 247, 325
BmiI GGNNCC 5 cut(s) 166, 248, 249, 343, 483
BmrFI CCNGG 2 cut(s) 219, 307
BoxI GACNNNNGTC 2 cut(s) 207, 419
Bpu10I CCTNAGC 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 208, 407
BsaJI CCNNGG 4 cut(s) 48, 91, 306, 375
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 82, 157, 158, 292
Bse1I ACTGG 2 cut(s) 388, 393
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 219, 307
BseDI CCNNGG 4 cut(s) 48, 91, 306, 375
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 5 cut(s) 81, 82, 157, 158, 292
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 388, 393
BseRI GAGGAG 2 cut(s) 308, 311
BseXI GCAGC 3 cut(s) 157, 314, 439
BseYI CCCAGC 1 cut(s) 123
Bsh1236I CGCG 2 cut(s) 93, 339
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 2 cut(s) 275, 329
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 3 cut(s) 28, 260, 292
BslI CCNNNNNNNGG 5 cut(s) 81, 82, 157, 158, 292
BsmAI GTCTC 2 cut(s) 208, 407
BsmFI GGGAC 3 cut(s) 28, 260, 292
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 2 cut(s) 208, 407
BsoBI CYCGRG 2 cut(s) 275, 329
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 7 cut(s) 39, 91, 93, 233, 236, 339, 368
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 2 cut(s) 93, 339
BspLI GGNNCC 5 cut(s) 166, 248, 249, 343, 483
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 2 cut(s) 208, 407
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 2 cut(s) 388, 393
BssECI CCNNGG 4 cut(s) 48, 91, 306, 375
BssMI GATC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 219, 307
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 462, 468
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 371
BstFNI CGCG 2 cut(s) 93, 339
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 2 cut(s) 208, 407
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 5 cut(s) 71, 133, 142, 308, 350
BstNI CCWGG 2 cut(s) 219, 307
BstPAI GACNNNNGTC 2 cut(s) 207, 419
BstSCI CCNGG 2 cut(s) 217, 305
BstUI CGCG 2 cut(s) 93, 339
BstV1I GCAGC 3 cut(s) 157, 314, 439
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 371
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 16, 381
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 452
Cfr13I GGNCC 2 cut(s) 247, 325
Cfr42I CCGCGG 1 cut(s) 94
CseI GACGC 1 cut(s) 151
CviJI RGCY 9 cut(s) 127, 148, 268, 274, 305, 326, 344, 353, 358
CviKI_1 RGCY 9 cut(s) 127, 148, 268, 274, 305, 326, 344, 353, 358
DdeI CTNAG 1 cut(s) 456
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 462, 468
EarI CTCTTC 2 cut(s) 462, 468
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 48
Eco31I GGTCTC 2 cut(s) 208, 407
Eco47I GGWCC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 451
Eco72I CACGTG 1 cut(s) 207
Eco88I CYCGRG 2 cut(s) 275, 329
EcoO109I RGGNCCY 2 cut(s) 247, 325
EcoRII CCWGG 2 cut(s) 217, 305
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 1 cut(s) 313
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 28, 260, 292
FauI CCCGC 1 cut(s) 375
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 4 cut(s) 146, 234, 303, 453
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 146, 234, 303, 453
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 451
GluI GCNGC 4 cut(s) 146, 234, 303, 453
GsaI CCCAGC 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 452
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 44, 141
Hpy188I TCNGA 4 cut(s) 193, 213, 379, 440
Hpy188III TCNNGA 3 cut(s) 245, 277, 286
Hpy8I GTNNAC 2 cut(s) 44, 141
Hpy99I CGWCG 3 cut(s) 136, 142, 145
HpyAV CCTTC 2 cut(s) 316, 472
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 133, 142, 308, 350
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 206
HspAI GCGC 1 cut(s) 450
KflI GGGWCCC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 4 cut(s) 52, 58, 153, 341
Lsp1109I GCAGC 3 cut(s) 157, 314, 439
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 206
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 4 cut(s) 473, 476, 479, 485
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 219, 307
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 2 cut(s) 219, 307
MvnI CGCG 2 cut(s) 93, 339
MwoI GCNNNNNNNGC 5 cut(s) 71, 133, 142, 308, 350
NdeII GATC 1 cut(s) 481
NlaIV GGNNCC 5 cut(s) 166, 248, 249, 343, 483
PaeR7I CTCGAG 1 cut(s) 329
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 147, 235, 304, 454
PmaCI CACGTG 1 cut(s) 207
PmlI CACGTG 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 247
PshAI GACNNNNGTC 2 cut(s) 207, 419
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 217, 305
PspCI CACGTG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 2 cut(s) 217, 305
PspN4I GGNNCC 5 cut(s) 166, 248, 249, 343, 483
PspPI GGNCC 2 cut(s) 247, 325
PspPPI RGGWCCY 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 329
PsuI RGATCY 1 cut(s) 481
SacII CCGCGG 1 cut(s) 94
SalI GTCGAC 1 cut(s) 139
SatI GCNGC 4 cut(s) 146, 234, 303, 453
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 2 cut(s) 247, 325
ScrFI CCNGG 2 cut(s) 219, 307
SduI GDGCHC 1 cut(s) 63
SetI ASST 3 cut(s) 150, 209, 360
Sfr274I CTCGAG 1 cut(s) 329
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SgrDI CGTCGACG 1 cut(s) 139
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 7 cut(s) 39, 91, 93, 233, 236, 339, 368
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 217, 305
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 140, 330
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 2 cut(s) 16, 388
TseI GCWGC 3 cut(s) 145, 302, 452
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 305, 474
TspRI CASTG 2 cut(s) 16, 388
VpaK11BI GGWCC 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.