Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8006714.1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 530

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8006714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 530 bp

agcacgctatcattgtctccaccctgaaacgggtaatccgcggtggcgttggcacagacaatgcaacctcccagccaccgctgccgtcgacgcagctcccagcaacgggtgtcaccgatcaagttgtgataccattttcggattgtgatgacacgtgtcaggtatgtaagatggggaaggacaattgccttggctgtggtatgttcccaccaagcgagcaagacaaaggtaaaaaggtgaagacgagcaagtacaggggagtgcgacagagaccaggaggaaaatgggcagcggagattcgggacccgcatctcgccgttcggctttggctcgggactttccagacggaggaggaggcagccagggcttatgacacgaaggccctcgagtttcgtggagctgacagagccaagctaaacttcccgccgtcctgggagactggtactaccagtggagcaatggctgatgagaccaaagtccaaacaagtccagtcggagagagcagcgctgctgaggaagaagaagaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

176

Amino Acids

19.06

Weight (kDa)

5.35

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	39, 41, 79, 292, 307, 424
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	253, 444
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	5 cut(s)	29, 30, 105, 106, 348
AflIII	ACRYGT	2 cut(s)	152, 154
AjnI	CCWGG	3 cut(s)	273, 361, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	3 cut(s)	96, 400, 414
AluI	AGCT	3 cut(s)	96, 400, 414
Alw26I	GTCTC	4 cut(s)	21, 264, 430, 463
Ama87I	CYCGRG	2 cut(s)	331, 385
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	6 cut(s)	81, 93, 289, 358, 503, 508
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	303, 381
AsuHPI	GGTGA	2 cut(s)	105, 249
AvaI	CYCGRG	2 cut(s)	331, 385
AvaII	GGWCC	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	6 cut(s)	68, 105, 301, 370, 495, 515
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	3 cut(s)	69, 301, 411
BciT130I	CCWGG	3 cut(s)	275, 363, 432
BcoDI	GTCTC	4 cut(s)	21, 264, 430, 463
BfoI	RGCGCY	1 cut(s)	509
BisI	GCNGC	6 cut(s)	82, 94, 290, 359, 504, 509
BlsI	GCNGC	6 cut(s)	83, 95, 291, 360, 505, 510
Bme1390I	CCNGG	3 cut(s)	275, 363, 432
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	2 cut(s)	331, 385
BmgT120I	GGNCC	2 cut(s)	303, 381
BmiI	GGNNCC	2 cut(s)	304, 305
BmrFI	CCNGG	3 cut(s)	275, 363, 432
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	2 cut(s)	155, 475
BpiI	GAAGAC	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	155
BsaI	GGTCTC	2 cut(s)	264, 463
BsaJI	CCNNGG	4 cut(s)	39, 189, 362, 431
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 30, 105, 106, 348
Bse1I	ACTGG	3 cut(s)	444, 449, 490
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	3 cut(s)	275, 363, 432
BseDI	CCNNGG	4 cut(s)	39, 189, 362, 431
BseLI	CCNNNNNNNGG	5 cut(s)	29, 30, 105, 106, 348
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	3 cut(s)	444, 449, 490
BseRI	GAGGAG	2 cut(s)	364, 367
BseXI	GCAGC	6 cut(s)	68, 105, 301, 370, 495, 515
BseYI	CCCAGC	2 cut(s)	71, 99
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	382
BsiHKCI	CYCGRG	2 cut(s)	331, 385
BslFI	GGGAC	2 cut(s)	316, 348
BslI	CCNNNNNNNGG	5 cut(s)	29, 30, 105, 106, 348
BsmAI	GTCTC	4 cut(s)	21, 264, 430, 463
BsmFI	GGGAC	2 cut(s)	316, 348
BsnI	GGCC	1 cut(s)	382
Bso31I	GGTCTC	2 cut(s)	264, 463
BsoBI	CYCGRG	2 cut(s)	331, 385
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	6 cut(s)	39, 41, 79, 292, 307, 424
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	304, 305
BspTNI	GGTCTC	2 cut(s)	264, 463
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	444, 449, 490
BssECI	CCNNGG	4 cut(s)	39, 189, 362, 431
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	275, 363, 432
Bst6I	CTCTTC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	5, 217
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	4 cut(s)	21, 264, 430, 463
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 90, 364, 406
BstNI	CCWGG	3 cut(s)	275, 363, 432
BstPAI	GACNNNNGTC	2 cut(s)	155, 475
BstSCI	CCNGG	3 cut(s)	273, 361, 430
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	6 cut(s)	68, 105, 301, 370, 495, 515
BstV2I	GAAGAC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	5, 217
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	303, 381
Cfr42I	CCGCGG	1 cut(s)	42
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	252, 443
CviQI	GTAC	2 cut(s)	252, 443
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	264, 463
Eco47I	GGWCC	1 cut(s)	303
Eco47III	AGCGCT	1 cut(s)	507
Eco72I	CACGTG	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	331, 385
EcoO109I	RGGNCCY	2 cut(s)	303, 381
EcoRII	CCWGG	3 cut(s)	273, 361, 430
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaiI	YATR	3 cut(s)	165, 202, 371
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	2 cut(s)	316, 348
FauI	CCCGC	2 cut(s)	314, 431
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	82, 94, 290, 359, 504, 509
Fsp4HI	GCNGC	6 cut(s)	82, 94, 290, 359, 504, 509
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	6 cut(s)	82, 94, 290, 359, 504, 509
GsaI	CCCAGC	2 cut(s)	75, 103
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	382
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	508
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	297
HphI	GGTGA	2 cut(s)	105, 249
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	141, 496
Hpy188III	TCNNGA	3 cut(s)	301, 333, 342
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	2 cut(s)	90, 93
HpyAV	CCTTC	2 cut(s)	171, 372
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 90, 364, 406
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	154
HspAI	GCGC	1 cut(s)	506
KflI	GGGWCCC	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	101, 397, 454
Lsp1109I	GCAGC	6 cut(s)	68, 105, 301, 370, 495, 515
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	252, 529
MfeI	CAATTG	1 cut(s)	183
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	8 cut(s)	78, 271, 342, 345, 348, 394, 507, 519
MspA1I	CMGCKG	3 cut(s)	41, 81, 292
MspR9I	CCNGG	3 cut(s)	275, 363, 432
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	3 cut(s)	275, 363, 432
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	81, 90, 364, 406
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	304, 305
NmuCI	GTSAC	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	6 cut(s)	83, 95, 291, 360, 505, 510
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	303
PshAI	GACNNNNGTC	2 cut(s)	155, 475
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	273, 361, 430
PspCI	CACGTG	1 cut(s)	155
PspFI	CCCAGC	2 cut(s)	71, 99
PspGI	CCWGG	3 cut(s)	273, 361, 430
PspN4I	GGNNCC	2 cut(s)	304, 305
PspPI	GGNCC	2 cut(s)	303, 381
PspPPI	RGGWCCY	1 cut(s)	303
PspXI	VCTCGAGB	1 cut(s)	385
RsaI	GTAC	2 cut(s)	253, 444
RsaNI	GTAC	2 cut(s)	252, 443
SacII	CCGCGG	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	87
SatI	GCNGC	6 cut(s)	82, 94, 290, 359, 504, 509
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	303, 381
ScrFI	CCNGG	3 cut(s)	275, 363, 432
SetI	ASST	8 cut(s)	70, 98, 157, 164, 231, 239, 402, 416
SfaNI	GCATC	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	385
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SgrDI	CGTCGACG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	6 cut(s)	39, 41, 79, 292, 307, 424
StyD4I	CCNGG	3 cut(s)	273, 361, 430
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	88, 386
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	6 cut(s)	81, 93, 289, 358, 503, 508
Tsp45I	GTSAC	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 456
XhoI	CTCGAG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.