AT5G67010

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000568
Physical Location & Seq
Reverse (-)
26749058 .. 26749616
559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67010.1

Sequence Viewer

Length: 489 bp
ATGGATTATTCAGAAAATGTTCAAAACAAAAATTTCACCCCTATTTCACAACCTCCTAACTTGACAAGAGACCAAGAACATGCTATCATGGTTTCTACTTTGCGACAAGTGATATCCAACACTGGAGGTGATACGTCATCATCTCACTACATTGCTGCAAGTGAGGCTCTTCCACCTTCGGACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCAGTTGCTACGGGTGCGCATTCCCACAGCATGAAGAGATTAAGCAGGAGAAGAAGCATAAAGGAGTGAGGAAGAAGCCATCAGGAAAATGGTCGGCGGAAATATGGGATCCGAGTACAAGAACAAGGAGGTGGCTTGGAACGTTTCCGACGGCAGAGATGGCAGCGGATGCTTACGATGAGGCAGCGGCTGCGCTTGTCGAAAAAAGATCAGCGAGACGTGGCTCAAAGAAGGGAGAAGGAAGCATTCACCAAGAAGTCGGCGGCGGAGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

162

Amino Acids

17.6

Weight (kDa)

6.52

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 89 - 137 3.7e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 229
AciI CCGC 6 cut(s) 204, 308, 377, 398, 474, 477
AclI AACGTT 1 cut(s) 353
AclWI GGATC 2 cut(s) 314, 327
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 63, 421
AlwI GGATC 2 cut(s) 314, 327
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 4 cut(s) 155, 374, 395, 401
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 2 cut(s) 230, 406
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 4 cut(s) 28, 140, 202, 452
BamHI GGATCC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 142, 386, 388, 407
BccI CCATC 2 cut(s) 298, 364
BceAI ACGGC 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 63, 421
BisI GCNGC 7 cut(s) 156, 205, 375, 396, 399, 402, 475
BlsI GCNGC 7 cut(s) 157, 206, 376, 397, 400, 403, 476
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 127, 213
Bse3DI GCAATG 1 cut(s) 150
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 127, 213
BseXI GCAGC 4 cut(s) 142, 386, 388, 407
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 63, 421
BsmBI CGTCTC 1 cut(s) 421
BsmI GAATGC 2 cut(s) 230, 456
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 319, 419
BspACI CCGC 6 cut(s) 204, 308, 377, 398, 474, 477
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 2 cut(s) 314, 327
BspQI GCTCTTC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 2 cut(s) 127, 213
BssMI GATC 2 cut(s) 319, 419
BssNI GRCGYC 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 174, 240
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 2 cut(s) 380, 401
BstC8I GCNNGC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 2 cut(s) 230, 406
BstKTI GATC 2 cut(s) 322, 422
BstMAI GTCTC 2 cut(s) 63, 421
BstMBI GATC 2 cut(s) 319, 419
BstMWI GCNNNNNNNGC 5 cut(s) 164, 225, 371, 380, 401
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 4 cut(s) 142, 386, 388, 407
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 189
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 2 cut(s) 230, 406
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 2 cut(s) 191, 196
Csp6I GTAC 1 cut(s) 327
CviAII CATG 3 cut(s) 80, 88, 242
CviJI RGCY 6 cut(s) 167, 189, 289, 346, 401, 435
CviKI_1 RGCY 6 cut(s) 167, 189, 289, 346, 401, 435
CviQI GTAC 1 cut(s) 327
DpnI GATC 2 cut(s) 321, 421
DpnII GATC 2 cut(s) 319, 419
Eam1104I CTCTTC 2 cut(s) 174, 240
EarI CTCTTC 2 cut(s) 174, 240
EciI GGCGGA 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 114
EcoRV GATATC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 3 cut(s) 83, 91, 245
FaiI YATR 5 cut(s) 81, 89, 243, 270, 316
FatI CATG 3 cut(s) 79, 87, 241
Fnu4HI GCNGC 7 cut(s) 156, 205, 375, 396, 399, 402, 475
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 7 cut(s) 156, 205, 375, 396, 399, 402, 475
FspAI RTGCGCAY 1 cut(s) 229
FspI TGCGCA 1 cut(s) 229
GlaI GCGC 2 cut(s) 229, 405
GluI GCNGC 7 cut(s) 156, 205, 375, 396, 399, 402, 475
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 189
HgaI GACGC 2 cut(s) 191, 196
HhaI GCGC 2 cut(s) 230, 406
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 83, 91, 245
Hin6I GCGC 2 cut(s) 228, 404
HinP1I GCGC 2 cut(s) 228, 404
HphI GGTGA 4 cut(s) 28, 140, 202, 452
Hpy188I TCNGA 4 cut(s) 13, 181, 324, 360
Hpy188III TCNNGA 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 3 cut(s) 186, 436, 443
HpyCH4IV ACGT 3 cut(s) 134, 353, 430
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 225, 371, 380, 401
HpySE526I ACGT 3 cut(s) 134, 353, 430
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 83, 91, 245
HspAI GCGC 2 cut(s) 228, 404
Kzo9I GATC 2 cut(s) 319, 419
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 5 cut(s) 108, 171, 226, 242, 279
Lsp1109I GCAGC 4 cut(s) 142, 386, 388, 407
LweI GCATC 1 cut(s) 370
MaeII ACGT 3 cut(s) 134, 353, 430
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 321, 421
MboI GATC 2 cut(s) 319, 419
MboII GAAGA 4 cut(s) 161, 257, 274, 295
MflI RGATCY 1 cut(s) 319
MluCI AATT 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 141, 383
MnlI CCTC 7 cut(s) 63, 119, 157, 207, 273, 333, 385
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 377, 398
Mva1269I GAATGC 2 cut(s) 230, 456
MwoI GCNNNNNNNGC 5 cut(s) 164, 225, 371, 380, 401
NdeII GATC 2 cut(s) 319, 419
NlaIII CATG 3 cut(s) 83, 91, 245
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 229
NspI RCATGY 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 2 cut(s) 230, 456
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 7 cut(s) 157, 206, 376, 397, 400, 403, 476
Psp1406I AACGTT 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 7 cut(s) 156, 205, 375, 396, 399, 402, 475
Sau3AI GATC 2 cut(s) 319, 419
Sau96I GGNCC 1 cut(s) 188
SetI ASST 7 cut(s) 55, 130, 137, 178, 344, 356, 433
SfaNI GCATC 1 cut(s) 370
Sse9I AATT 1 cut(s) 31
SsiI CCGC 6 cut(s) 204, 308, 377, 398, 474, 477
TaiI ACGT 3 cut(s) 137, 356, 433
TaqI TCGA 1 cut(s) 411
TasI AATT 1 cut(s) 31
TatI WGTACW 1 cut(s) 326
TauI GCSGC 3 cut(s) 207, 401, 477
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 4 cut(s) 155, 374, 395, 401
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.