Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

9077771 .. 9078454

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCTGTCGATGGCCAAGGAGCAGGAGCACGCCATCATGGTCTCCGCCCTCGAACAGGTCATCGGCGGCGGCATTGCCACCAGAACCAGTGGAACCTCTCAGAACCACTGCCAGTATGCCACGTCAGCGGCTGAAGCGGGAACAAATAAGAAGGTTGTGATATTAGTTTCGGATGGCGACACCTGTCAGGTATGCAAGATCGATGGCTGCCTCGGCTGCGAGTTCTTCCCGCCAAGCAATAAGCATGGCAAAGGGAAGAGGGTCAAGAAGAGCAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGTGACCCGCGGCGGGCGGTGAGGGTGTGGCTCGGGACGTTCCAGACGGCGGAGGAAGCGGCGAGGGCTTACGACAAGGCGGCGGTCGAGTTCCGAGGAGAGAAAGCCAAGCTCAACTTCCCACGAATAAGCAGTGAAGCTGGTACCAGTACTGCAGCATTGACCAAGCAAAGCATGGAGACTGATGATGAGGTCCATAATCAAGTCAATCCAAGTAATGAGAAGTCAGCGAATCAGGAATTGGGACAGGGCAGTGATGTTAAAGACGACGAGATTGATCGTTTCATCTGGAAAATGCTTAAAGATGACGACGGCGATGAAGATTTAAGCACAATGGTCAACTCAAATATGTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

6.45

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	91 - 141	4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	3 cut(s)	278, 469, 475
AfiI	CCNNNNNNNGG	3 cut(s)	55, 337, 373
AgsI	TTSAA	1 cut(s)	679
AjiI	CACGTC	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 548, 580
AluBI	AGCT	2 cut(s)	436, 464
AluI	AGCT	2 cut(s)	436, 464
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	46, 497
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	12, 296
ApeKI	GCWGC	3 cut(s)	207, 216, 479
Asp718I	GGTACC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	194, 203, 491
BccI	CCATC	4 cut(s)	4, 41, 167, 197
BceAI	ACGGC	3 cut(s)	283, 387, 652
BcoDI	GTCTC	2 cut(s)	46, 497
BfmI	CTRYAG	1 cut(s)	477
BmcAI	AGTACT	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	94, 469
BoxI	GACNNNNGTC	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	5 cut(s)	15, 211, 299, 332, 418
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 337, 373
Bse1I	ACTGG	3 cut(s)	87, 112, 471
Bse3DI	GCAATG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	5 cut(s)	15, 211, 299, 332, 418
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	55, 337, 373
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	3 cut(s)	87, 112, 471
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	194, 203, 491
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	14, 298
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	356
BslFI	GGGAC	2 cut(s)	373, 582
BslI	CCNNNNNNNGG	3 cut(s)	55, 337, 373
BsmAI	GTCTC	2 cut(s)	46, 497
BsmFI	GGGAC	2 cut(s)	373, 582
BsnI	GGCC	2 cut(s)	14, 298
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	198, 601
BspANI	GGCC	2 cut(s)	14, 298
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	94, 469
BspMAI	CTGCAG	1 cut(s)	481
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	87, 112, 471
BssECI	CCNNGG	5 cut(s)	15, 211, 299, 332, 418
BssMI	GATC	2 cut(s)	198, 601
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	251, 263
BstC8I	GCNNGC	2 cut(s)	30, 339
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	2 cut(s)	299, 332
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	201, 604
BstMAI	GTCTC	2 cut(s)	46, 497
BstMBI	GATC	2 cut(s)	198, 601
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 134, 213, 216, 380, 389
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	194, 203, 491
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	14, 298
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	299, 332
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	3 cut(s)	106, 463, 583
BtsIMutI	CAGTG	4 cut(s)	94, 106, 463, 583
Cac8I	GCNNGC	2 cut(s)	30, 339
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	517
Cfr42I	CCGCGG	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	277, 468, 474
CviAII	CATG	3 cut(s)	37, 245, 499
CviQI	GTAC	3 cut(s)	277, 468, 474
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	200, 603
DpnII	GATC	2 cut(s)	198, 601
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	251, 263
EarI	CTCTTC	2 cut(s)	251, 263
EciI	GGCGGA	3 cut(s)	34, 332, 389
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	40, 248, 502
FaiI	YATR	7 cut(s)	38, 117, 193, 246, 500, 522, 674
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	2 cut(s)	373, 582
FatI	CATG	3 cut(s)	36, 244, 498
FauI	CCCGC	4 cut(s)	130, 237, 330, 339
FokI	GGATG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	14, 298
Hin1II	CATG	3 cut(s)	40, 248, 502
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	322, 556
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	3 cut(s)	102, 172, 419
Hpy188III	TCNNGA	6 cut(s)	265, 326, 358, 367, 560, 613
Hpy8I	GTNNAC	1 cut(s)	664
Hpy99I	CGWCG	2 cut(s)	596, 638
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	122, 362
HpyCH4V	TGCA	2 cut(s)	195, 479
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 134, 213, 216, 380, 389
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	122, 362
Hsp92II	CATG	3 cut(s)	40, 248, 502
KpnI	GGTACC	1 cut(s)	471
KspI	CCGCGG	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	198, 601
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	19, 25
Lsp1109I	GCAGC	3 cut(s)	194, 203, 491
MaeII	ACGT	2 cut(s)	122, 362
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	200, 603
MboI	GATC	2 cut(s)	198, 601
MboII	GAAGA	4 cut(s)	217, 268, 280, 656
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	563, 679
MluNI	TGGCCA	1 cut(s)	14
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	3 cut(s)	585, 624, 650
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	128, 334
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	6 cut(s)	125, 134, 213, 216, 380, 389
NdeII	GATC	2 cut(s)	198, 601
NlaIII	CATG	3 cut(s)	40, 248, 502
NlaIV	GGNNCC	2 cut(s)	94, 469
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	322, 556
PshAI	GACNNNNGTC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	94, 469
PspPI	GGNCC	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	278, 469, 475
RsaNI	GTAC	3 cut(s)	277, 468, 474
SacII	CCGCGG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	585, 624, 650
Sau3AI	GATC	2 cut(s)	198, 601
Sau96I	GGNCC	1 cut(s)	517
ScaI	AGTACT	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	477
Sfr303I	CCGCGG	1 cut(s)	335
SgrBI	CCGCGG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	517
Sse9I	AATT	2 cut(s)	563, 679
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	2 cut(s)	125, 365
TaqI	TCGA	4 cut(s)	8, 51, 201, 411
TasI	AATT	2 cut(s)	563, 679
TatI	WGTACW	2 cut(s)	276, 473
TauI	GCSGC	7 cut(s)	69, 72, 131, 317, 337, 386, 407
TfiI	GAWTC	2 cut(s)	322, 556
Tru1I	TTAA	3 cut(s)	585, 624, 650
Tru9I	TTAA	3 cut(s)	585, 624, 650
TscAI	CASTG	4 cut(s)	94, 113, 463, 583
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	207, 216, 479
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	598, 657
TspRI	CASTG	4 cut(s)	94, 113, 463, 583
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
ZrmI	AGTACT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.