Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16514222 .. 16514803

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAAAGCAGTGGGAGTAAAATGCCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCGGTGGAGTTGGCACAGACAATGCACCCTCCCAGCCACCGCCGCCGTCGACGCAGCTCCCAGCAACGGGTGGCACCGATCAAGTTGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGACAATTGCCTTGGCTGTGGTATGTTCCCACCAAGCGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCAGCGGAGATTCGGGACCCGCATCTCGCCGTTCGGCTTTGGCTCGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGTGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACTGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGAGGAAGAAGAAGAGGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

193

Amino Acids

20.83

Weight (kDa)

5.22

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	95 - 145	5.8e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	78
AciI	CCGC	8 cut(s)	76, 78, 116, 119, 301, 329, 344, 461
AclWI	GGATC	1 cut(s)	569
AcvI	CACGTG	1 cut(s)	192
AfaI	GTAC	2 cut(s)	290, 481
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
AflIII	ACRYGT	2 cut(s)	189, 191
AjnI	CCWGG	2 cut(s)	310, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	3 cut(s)	133, 437, 451
AluI	AGCT	3 cut(s)	133, 437, 451
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 301, 500
AlwI	GGATC	1 cut(s)	569
Ama87I	CYCGRG	2 cut(s)	368, 422
Aor51HI	AGCGCT	1 cut(s)	544
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	130, 326, 395, 540, 545
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	340, 418
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	2 cut(s)	368, 422
AvaII	GGWCC	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	5 cut(s)	142, 338, 407, 532, 552
BccI	CCATC	3 cut(s)	202, 472, 565
BceAI	ACGGC	2 cut(s)	106, 338
BciT130I	CCWGG	2 cut(s)	312, 400
BcoDI	GTCTC	3 cut(s)	58, 301, 500
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 541, 546
BlsI	GCNGC	7 cut(s)	120, 132, 303, 328, 397, 542, 547
Bme1390I	CCNGG	2 cut(s)	312, 400
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	368, 422
BmgT120I	GGNCC	2 cut(s)	340, 418
BmiI	GGNNCC	4 cut(s)	151, 341, 342, 576
BmrFI	CCNGG	2 cut(s)	312, 400
BmsI	GCATC	1 cut(s)	355
BoxI	GACNNNNGTC	2 cut(s)	192, 512
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	301, 500
BsaJI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
Bse1I	ACTGG	3 cut(s)	481, 486, 527
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	312, 400
BseDI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	481, 486, 527
BseRI	GAGGAG	2 cut(s)	401, 404
BseXI	GCAGC	5 cut(s)	142, 338, 407, 532, 552
BseYI	CCCAGC	2 cut(s)	108, 136
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	368, 422
BslFI	GGGAC	2 cut(s)	353, 385
BslI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
BsmAI	GTCTC	3 cut(s)	58, 301, 500
BsmFI	GGGAC	2 cut(s)	353, 385
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	2 cut(s)	301, 500
BsoBI	CYCGRG	2 cut(s)	368, 422
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	154, 574
BspACI	CCGC	8 cut(s)	76, 78, 116, 119, 301, 329, 344, 461
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	151, 341, 342, 576
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	301, 500
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	481, 486, 527
BssECI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
BssMI	GATC	2 cut(s)	154, 574
BssT1I	CCWWGG	2 cut(s)	27, 226
Bst2UI	CCWGG	2 cut(s)	312, 400
Bst6I	CTCTTC	2 cut(s)	555, 561
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	42, 254
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	464
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	2 cut(s)	157, 577
BstMAI	GTCTC	3 cut(s)	58, 301, 500
BstMBI	GATC	2 cut(s)	154, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 118, 127, 401, 443
BstNI	CCWGG	2 cut(s)	312, 400
BstPAI	GACNNNNGTC	2 cut(s)	192, 512
BstSCI	CCNGG	2 cut(s)	310, 398
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	142, 338, 407, 532, 552
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	464
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 474, 493
Cac8I	GCNNGC	2 cut(s)	42, 254
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	340, 418
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	289, 480
CviQI	GTAC	2 cut(s)	289, 480
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	2 cut(s)	156, 576
DpnII	GATC	2 cut(s)	154, 574
Eam1104I	CTCTTC	2 cut(s)	555, 561
EarI	CTCTTC	2 cut(s)	555, 561
Eco130I	CCWWGG	2 cut(s)	27, 226
Eco31I	GGTCTC	2 cut(s)	301, 500
Eco47I	GGWCC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	544
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	2 cut(s)	368, 422
EcoO109I	RGGNCCY	2 cut(s)	340, 418
EcoRII	CCWGG	2 cut(s)	310, 398
EcoT14I	CCWWGG	2 cut(s)	27, 226
ErhI	CCWWGG	2 cut(s)	27, 226
FaiI	YATR	3 cut(s)	202, 239, 408
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	2 cut(s)	353, 385
FauI	CCCGC	2 cut(s)	351, 468
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 541, 546
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 541, 546
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 541, 546
GsaI	CCCAGC	2 cut(s)	112, 140
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	419
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	178, 472, 533
Hpy188III	TCNNGA	3 cut(s)	338, 370, 379
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	127, 130
HpyAV	CCTTC	2 cut(s)	208, 409
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 118, 127, 401, 443
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	1 cut(s)	543
KflI	GGGWCCC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	154, 574
LmnI	GCTCC	5 cut(s)	31, 37, 138, 434, 491
Lsp1109I	GCAGC	5 cut(s)	142, 338, 407, 532, 552
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	156, 576
MboI	GATC	2 cut(s)	154, 574
MboII	GAAGA	5 cut(s)	289, 566, 569, 572, 578
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	9 cut(s)	115, 308, 379, 382, 385, 431, 478, 544, 556
MspA1I	CMGCKG	2 cut(s)	78, 329
MspR9I	CCNGG	2 cut(s)	312, 400
MunI	CAATTG	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	312, 400
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	5 cut(s)	31, 118, 127, 401, 443
NdeII	GATC	2 cut(s)	154, 574
NlaIV	GGNNCC	4 cut(s)	151, 341, 342, 576
PaeR7I	CTCGAG	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	7 cut(s)	120, 132, 303, 328, 397, 542, 547
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	340
PshAI	GACNNNNGTC	2 cut(s)	192, 512
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	310, 398
PspCI	CACGTG	1 cut(s)	192
PspFI	CCCAGC	2 cut(s)	108, 136
PspGI	CCWGG	2 cut(s)	310, 398
PspN4I	GGNNCC	4 cut(s)	151, 341, 342, 576
PspPI	GGNCC	2 cut(s)	340, 418
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	2 cut(s)	290, 481
RsaNI	GTAC	2 cut(s)	289, 480
SacII	CCGCGG	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	124
SatI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 541, 546
Sau3AI	GATC	2 cut(s)	154, 574
Sau96I	GGNCC	2 cut(s)	340, 418
ScrFI	CCNGG	2 cut(s)	312, 400
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	7 cut(s)	135, 194, 201, 268, 276, 439, 453
SfaNI	GCATC	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	422
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SgrDI	CGTCGACG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	8 cut(s)	76, 78, 116, 119, 301, 329, 344, 461
StyD4I	CCNGG	2 cut(s)	310, 398
StyI	CCWWGG	2 cut(s)	27, 226
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	125, 423
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	2 cut(s)	121, 304
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	3 cut(s)	16, 481, 493
TseI	GCWGC	5 cut(s)	130, 326, 395, 540, 545
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	398, 567
TspRI	CASTG	3 cut(s)	16, 481, 493
VpaK11BI	GGWCC	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.