Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16942025 .. 16942648

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCCTCGCATTCCTGGGGTTTGCCGAAAGAGCAGGAGCACGCAATCATGGTCTCCGCCCTTAAACAGGTCATCTGCGGCGGCGGCGGCATTGCTTCCAGAAGCAGCGGGCACTCTCGGCCAGCAGTTGAAGGTAGAAGTGGAACAAAGAAGGTTGTGATATCAATTTCGGATGTCGACACGTGCCAGGTGTGCAGGATCGACGGCTGCCTCGGCTGCGAGTTCTTCCCGCCAAGCAAGCCGGACAAAGGGAAGAGGATCAAGAAGGGCAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGGGATCCGCGGAGGGCGGCGAGGGTTTGGCTCGGGACGTTCAAGACGGCGGAGGAAGCGGCCAGGGCTTATGACAAGGCTGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCACTAAGCAGTGAAGCTGGTACTACCAGTGCAGCATCGACTACGCAAAGCATGGACACTGGTGAGGTCAATCAAGTGAACGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGCAGTGATGTTAAGGACGAAGACATTGATCGTTTCATCTGGGAAATGCTTAAAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

207

Amino Acids

22.65

Weight (kDa)

9.11

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	91 - 140	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	331, 524
AclWI	GGATC	4 cut(s)	206, 266, 320, 333
AcoI	YGGCCR	2 cut(s)	119, 381
AcvI	CACGTG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	275, 463
AfiI	CCNNNNNNNGG	2 cut(s)	67, 248
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	131, 364
AjnI	CCWGG	3 cut(s)	14, 186, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	2 cut(s)	433, 458
AluI	AGCT	2 cut(s)	433, 458
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	4 cut(s)	206, 266, 320, 333
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	119, 293, 381
ApeKI	GCWGC	5 cut(s)	105, 207, 216, 401, 473
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbrPI	CACGTG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	5 cut(s)	117, 194, 203, 388, 485
BceAI	ACGGC	3 cut(s)	220, 280, 384
BciT130I	CCWGG	3 cut(s)	16, 188, 385
BcoDI	GTCTC	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	16, 188, 385
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	3 cut(s)	16, 188, 385
BmsI	GCATC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	417, 449
BsaAI	YACGTR	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	6 cut(s)	15, 211, 296, 329, 384, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 248
Bse1I	ACTGG	2 cut(s)	468, 505
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	16, 188, 385
BseDI	CCNNGG	6 cut(s)	15, 211, 296, 329, 384, 415
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	67, 248
BseMI	GCAATG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	468, 505
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	117, 194, 203, 388, 485
BsgI	GTGCAG	2 cut(s)	214, 492
Bsh1236I	CGCG	2 cut(s)	331, 524
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	121, 295, 383
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	370, 570
BslI	CCNNNNNNNGG	2 cut(s)	67, 248
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	370, 570
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	121, 295, 383
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	42, 114
Bsp143I	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
BspANI	GGCC	3 cut(s)	121, 295, 383
BspFNI	CGCG	2 cut(s)	331, 524
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	4 cut(s)	206, 266, 320, 333
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	468, 505
BssECI	CCNNGG	6 cut(s)	15, 211, 296, 329, 384, 415
BssMI	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
Bst2UI	CCWGG	3 cut(s)	16, 188, 385
Bst6I	CTCTTC	2 cut(s)	248, 546
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	42, 110, 123, 239
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	2 cut(s)	296, 329
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	331, 524
BstKTI	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
BstMCI	CGRYCG	1 cut(s)	408
BstNI	CCWGG	3 cut(s)	16, 188, 385
BstSCI	CCNGG	3 cut(s)	14, 186, 383
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	2 cut(s)	331, 524
BstV1I	GCAGC	5 cut(s)	117, 194, 203, 388, 485
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	121, 295, 383
BtgI	CCRYGG	2 cut(s)	296, 329
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	457, 571
BtsIMutI	CAGTG	4 cut(s)	457, 475, 498, 571
Cac8I	GCNNGC	4 cut(s)	42, 110, 123, 239
Cfr42I	CCGCGG	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	274, 462
CviAII	CATG	2 cut(s)	49, 493
CviQI	GTAC	2 cut(s)	274, 462
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	6 cut(s)	200, 260, 327, 407, 591, 618
DpnII	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
EaeI	YGGCCR	2 cut(s)	119, 381
Eam1104I	CTCTTC	2 cut(s)	248, 546
EarI	CTCTTC	2 cut(s)	248, 546
EciI	GGCGGA	3 cut(s)	46, 329, 386
Eco31I	GGTCTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	3 cut(s)	14, 186, 383
EcoRV	GATATC	1 cut(s)	162
FaeI	CATG	2 cut(s)	52, 496
FaiI	YATR	3 cut(s)	50, 393, 494
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	370, 570
FatI	CATG	2 cut(s)	48, 492
FauI	CCCGC	2 cut(s)	101, 237
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	121, 295, 383
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	52, 496
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	319, 544
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	178, 520
Hpy188I	TCNGA	2 cut(s)	172, 416
Hpy188III	TCNNGA	6 cut(s)	99, 262, 323, 355, 364, 548
Hpy8I	GTNNAC	2 cut(s)	178, 520
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	125, 145, 259
HpyCH4IV	ACGT	2 cut(s)	182, 359
HpyCH4V	TGCA	2 cut(s)	195, 473
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	2 cut(s)	182, 359
Hsp92II	CATG	2 cut(s)	52, 496
KspI	CCGCGG	1 cut(s)	332
Kzo9I	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	5 cut(s)	117, 194, 203, 388, 485
LweI	GCATC	1 cut(s)	485
MaeII	ACGT	2 cut(s)	182, 359
MalI	GATC	6 cut(s)	200, 260, 327, 407, 591, 618
MboI	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
MboII	GAAGA	4 cut(s)	217, 265, 563, 593
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	42, 114
MluCI	AATT	1 cut(s)	165
MseI	TTAA	3 cut(s)	63, 573, 612
MspA1I	CMGCKG	2 cut(s)	108, 331
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	16, 188, 385
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	3 cut(s)	16, 188, 385
MvnI	CGCG	2 cut(s)	331, 524
NdeII	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
NlaIII	CATG	2 cut(s)	52, 496
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	2 cut(s)	97, 192
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	319, 544
Ple19I	CGATCG	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	14, 186, 383
PspCI	CACGTG	1 cut(s)	183
PspGI	CCWGG	3 cut(s)	14, 186, 383
PspN4I	GGNNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	325
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	275, 463
RsaNI	GTAC	2 cut(s)	274, 462
SacII	CCGCGG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	63, 573, 612
Sau3AI	GATC	6 cut(s)	198, 258, 325, 405, 589, 616
ScrFI	CCNGG	3 cut(s)	16, 188, 385
SduI	GDGCHC	2 cut(s)	42, 114
SetI	ASST	9 cut(s)	72, 136, 156, 185, 192, 362, 435, 460, 510
SfaNI	GCATC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	332
SgrBI	CCGCGG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	14, 186, 383
TaiI	ACGT	2 cut(s)	185, 362
TaqI	TCGA	4 cut(s)	177, 201, 408, 479
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	7 cut(s)	81, 84, 87, 90, 314, 341, 383
TfiI	GAWTC	2 cut(s)	319, 544
Tru1I	TTAA	3 cut(s)	63, 573, 612
Tru9I	TTAA	3 cut(s)	63, 573, 612
TscAI	CASTG	4 cut(s)	457, 475, 505, 571
TseI	GCWGC	5 cut(s)	105, 207, 216, 401, 473
TspDTI	ATGAA	1 cut(s)	586
TspRI	CASTG	4 cut(s)	457, 475, 505, 571
XagI	CCTNNNNNAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.