Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16559437 .. 16560138

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATACCAAATCAAATTTCTTTGGCAGCCCCCACTCAAAAATCAAAATTCGACCAATCCGCATTTTTGGTAAGAAAATCTGGATTTCTTCTTCCCAGCTACACTTGGACCCGAAAATGAAAAGCATTGGGACCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAGACAATGCACCCTCCCAGCCACCGCCGCCGTCGACGCAGCTCCCAGCAACGGGTGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGAAGATTGCCTTGGCTGTGGATTGTTCCCGCCAAGCGAGCAAGACACAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCCGCGGAGATTCGGGACCCGCGTCGCGCCGCTCGGGTTTGGCTCGGGACGTTCAAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCGTCCTGGGACACTGGTACTACCAGTGGAGCAATGGCTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGAGGAAGAAGAAGAAGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

25.42

Weight (kDa)

8.22

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	135 - 185	5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	5 cut(s)	198, 449, 466, 471, 552
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	16, 48
AcvI	CACGTG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	410, 601
AfeI	AGCGCT	1 cut(s)	664
AfiI	CCNNNNNNNGG	4 cut(s)	186, 187, 262, 263
AflIII	ACRYGT	2 cut(s)	309, 311
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	3 cut(s)	430, 518, 587
AjuI	GAANNNNNNNTTGG	5 cut(s)	34, 330, 362, 560, 592
AluBI	AGCT	4 cut(s)	100, 253, 557, 571
AluI	AGCT	4 cut(s)	100, 253, 557, 571
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	178, 421, 620
AlwI	GGATC	1 cut(s)	689
Ama87I	CYCGRG	3 cut(s)	477, 488, 542
Aor51HI	AGCGCT	1 cut(s)	664
AoxI	GGCC	2 cut(s)	444, 537
ApeKI	GCWGC	5 cut(s)	27, 250, 515, 660, 665
ApoI	RAATTY	2 cut(s)	16, 48
AspLEI	GCGC	2 cut(s)	473, 665
AspS9I	GGNCC	5 cut(s)	109, 132, 444, 460, 538
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	3 cut(s)	477, 488, 542
AvaII	GGWCC	3 cut(s)	109, 132, 460
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	5 cut(s)	39, 262, 527, 652, 672
BccI	CCATC	2 cut(s)	322, 685
BceAI	ACGGC	2 cut(s)	226, 568
BciT130I	CCWGG	3 cut(s)	432, 520, 589
BcoDI	GTCTC	3 cut(s)	178, 421, 620
BfoI	RGCGCY	1 cut(s)	666
BisI	GCNGC	9 cut(s)	28, 239, 251, 422, 447, 474, 516, 661, 666
BlsI	GCNGC	9 cut(s)	29, 240, 252, 423, 448, 475, 517, 662, 667
Bme1390I	CCNGG	3 cut(s)	432, 520, 589
Bme18I	GGWCC	3 cut(s)	109, 132, 460
BmeT110I	CYCGRG	3 cut(s)	477, 488, 542
BmgT120I	GGNCC	5 cut(s)	109, 132, 444, 460, 538
BmiI	GGNNCC	6 cut(s)	111, 133, 271, 461, 462, 696
BmrFI	CCNGG	3 cut(s)	432, 520, 589
BoxI	GACNNNNGTC	3 cut(s)	312, 465, 632
BpiI	GAAGAC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	312
BsaI	GGTCTC	2 cut(s)	421, 620
BsaJI	CCNNGG	6 cut(s)	147, 196, 346, 447, 519, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 187, 262, 263
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	601, 606, 647
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	432, 520, 589
BseDI	CCNNGG	6 cut(s)	147, 196, 346, 447, 519, 588
BseLI	CCNNNNNNNGG	4 cut(s)	186, 187, 262, 263
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	3 cut(s)	601, 606, 647
BseRI	GAGGAG	2 cut(s)	521, 524
BseXI	GCAGC	5 cut(s)	39, 262, 527, 652, 672
BseYI	CCCAGC	3 cut(s)	96, 228, 256
Bsh1236I	CGCG	5 cut(s)	198, 449, 466, 471, 552
BshFI	GGCC	2 cut(s)	446, 539
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	3 cut(s)	477, 488, 542
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	4 cut(s)	145, 473, 505, 605
BslI	CCNNNNNNNGG	4 cut(s)	186, 187, 262, 263
BsmAI	GTCTC	3 cut(s)	178, 421, 620
BsmFI	GGGAC	4 cut(s)	145, 473, 505, 605
BsnI	GGCC	2 cut(s)	446, 539
Bso31I	GGTCTC	2 cut(s)	421, 620
BsoBI	CYCGRG	3 cut(s)	477, 488, 542
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	274, 694
BspANI	GGCC	2 cut(s)	446, 539
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	5 cut(s)	198, 449, 466, 471, 552
BspLI	GGNNCC	6 cut(s)	111, 133, 271, 461, 462, 696
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	421, 620
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	601, 606, 647
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	6 cut(s)	147, 196, 346, 447, 519, 588
BssMI	GATC	2 cut(s)	274, 694
BssT1I	CCWWGG	2 cut(s)	147, 346
Bst2UI	CCWGG	3 cut(s)	432, 520, 589
Bst6I	CTCTTC	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	162, 374
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	2 cut(s)	196, 447
BstFNI	CGCG	5 cut(s)	198, 449, 466, 471, 552
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	473, 665
BstKTI	GATC	2 cut(s)	277, 697
BstMAI	GTCTC	3 cut(s)	178, 421, 620
BstMBI	GATC	2 cut(s)	274, 694
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 247, 373, 521, 563
BstNI	CCWGG	3 cut(s)	432, 520, 589
BstPAI	GACNNNNGTC	3 cut(s)	312, 465, 632
BstSCI	CCNGG	3 cut(s)	430, 518, 587
BstUI	CGCG	5 cut(s)	198, 449, 466, 471, 552
BstV1I	GCAGC	5 cut(s)	39, 262, 527, 652, 672
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	446, 539
BtgI	CCRYGG	2 cut(s)	196, 447
BtsIMutI	CAGTG	2 cut(s)	594, 613
Cac8I	GCNNGC	2 cut(s)	162, 374
CfoI	GCGC	2 cut(s)	473, 665
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	5 cut(s)	109, 132, 444, 460, 538
Cfr42I	CCGCGG	2 cut(s)	199, 450
CseI	GACGC	2 cut(s)	256, 455
Csp6I	GTAC	2 cut(s)	409, 600
CviQI	GTAC	2 cut(s)	409, 600
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	2 cut(s)	276, 696
DpnII	GATC	2 cut(s)	274, 694
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	2 cut(s)	147, 346
Eco31I	GGTCTC	2 cut(s)	421, 620
Eco47I	GGWCC	3 cut(s)	109, 132, 460
Eco47III	AGCGCT	1 cut(s)	664
Eco72I	CACGTG	1 cut(s)	312
Eco88I	CYCGRG	3 cut(s)	477, 488, 542
EcoO109I	RGGNCCY	2 cut(s)	460, 538
EcoRII	CCWGG	3 cut(s)	430, 518, 587
EcoT14I	CCWWGG	2 cut(s)	147, 346
ErhI	CCWWGG	2 cut(s)	147, 346
FaiI	YATR	2 cut(s)	322, 528
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 560, 592
FaqI	GGGAC	4 cut(s)	145, 473, 505, 605
FauI	CCCGC	3 cut(s)	372, 471, 588
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	9 cut(s)	28, 239, 251, 422, 447, 474, 516, 661, 666
Fsp4HI	GCNGC	9 cut(s)	28, 239, 251, 422, 447, 474, 516, 661, 666
GlaI	GCGC	2 cut(s)	472, 664
GluI	GCNGC	9 cut(s)	28, 239, 251, 422, 447, 474, 516, 661, 666
GsaI	CCCAGC	3 cut(s)	100, 232, 260
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	446, 539
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	2 cut(s)	256, 455
HhaI	GCGC	2 cut(s)	473, 665
Hin6I	GCGC	2 cut(s)	471, 663
HinP1I	GCGC	2 cut(s)	471, 663
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	143, 246
Hpy188I	TCNGA	2 cut(s)	298, 653
Hpy188III	TCNNGA	5 cut(s)	82, 283, 458, 490, 499
Hpy8I	GTNNAC	2 cut(s)	143, 246
Hpy99I	CGWCG	3 cut(s)	247, 250, 471
HpyAV	CCTTC	2 cut(s)	328, 529
HpyCH4IV	ACGT	2 cut(s)	311, 494
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 247, 373, 521, 563
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	2 cut(s)	311, 494
HspAI	GCGC	2 cut(s)	471, 663
KflI	GGGWCCC	1 cut(s)	460
KspI	CCGCGG	2 cut(s)	199, 450
Kzo9I	GATC	2 cut(s)	274, 694
LmnI	GCTCC	5 cut(s)	151, 157, 258, 554, 611
Lsp1109I	GCAGC	5 cut(s)	39, 262, 527, 652, 672
MaeII	ACGT	2 cut(s)	311, 494
MalI	GATC	2 cut(s)	276, 696
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	2 cut(s)	274, 694
MboII	GAAGA	9 cut(s)	81, 84, 350, 409, 686, 689, 692, 695, 698
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	16, 48
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	7 cut(s)	235, 428, 499, 502, 505, 551, 664
MspA1I	CMGCKG	2 cut(s)	198, 449
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	432, 520, 589
MvaI	CCWGG	3 cut(s)	432, 520, 589
MvnI	CGCG	5 cut(s)	198, 449, 466, 471, 552
MwoI	GCNNNNNNNGC	5 cut(s)	238, 247, 373, 521, 563
NdeII	GATC	2 cut(s)	274, 694
NlaIV	GGNNCC	6 cut(s)	111, 133, 271, 461, 462, 696
PaeR7I	CTCGAG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	9 cut(s)	29, 240, 252, 423, 448, 475, 517, 662, 667
PmaCI	CACGTG	1 cut(s)	312
PmlI	CACGTG	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	460
PshAI	GACNNNNGTC	3 cut(s)	312, 465, 632
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	3 cut(s)	430, 518, 587
PspCI	CACGTG	1 cut(s)	312
PspFI	CCCAGC	3 cut(s)	96, 228, 256
PspGI	CCWGG	3 cut(s)	430, 518, 587
PspN4I	GGNNCC	6 cut(s)	111, 133, 271, 461, 462, 696
PspPI	GGNCC	5 cut(s)	109, 132, 444, 460, 538
PspPPI	RGGWCCY	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	410, 601
RsaNI	GTAC	2 cut(s)	409, 600
SacII	CCGCGG	2 cut(s)	199, 450
SalI	GTCGAC	1 cut(s)	244
SatI	GCNGC	9 cut(s)	28, 239, 251, 422, 447, 474, 516, 661, 666
Sau3AI	GATC	2 cut(s)	274, 694
Sau96I	GGNCC	5 cut(s)	109, 132, 444, 460, 538
ScrFI	CCNGG	3 cut(s)	432, 520, 589
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	102, 255, 314, 321, 388, 396, 497, 559, 573
Sfr274I	CTCGAG	1 cut(s)	542
Sfr303I	CCGCGG	2 cut(s)	199, 450
SgrBI	CCGCGG	2 cut(s)	199, 450
SgrDI	CGTCGACG	1 cut(s)	244
SinI	GGWCC	3 cut(s)	109, 132, 460
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	16, 48
StyD4I	CCNGG	3 cut(s)	430, 518, 587
StyI	CCWWGG	2 cut(s)	147, 346
TaiI	ACGT	2 cut(s)	314, 497
TaqI	TCGA	3 cut(s)	52, 245, 543
TasI	AATT	2 cut(s)	16, 48
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	4 cut(s)	241, 424, 449, 476
TfiI	GAWTC	1 cut(s)	454
TscAI	CASTG	2 cut(s)	601, 613
TseI	GCWGC	5 cut(s)	27, 250, 515, 660, 665
TspDTI	ATGAA	2 cut(s)	17, 134
TspGWI	ACGGA	2 cut(s)	518, 687
TspRI	CASTG	2 cut(s)	601, 613
VpaK11BI	GGWCC	3 cut(s)	109, 132, 460
XapI	RAATTY	2 cut(s)	16, 48
XcmI	CCANNNNNNNNNTGG	2 cut(s)	438, 613
XhoI	CTCGAG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.