Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

47240875 .. 47241504

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGCTCTCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTCAAACAGGTAGTCCGCGGTGGCGTCAGAACAAACAATGCACCCTCCCGGGCCCACCAGCCACCGCCGCCGCATCTCCATTATGCCTTATCACAGTCCTCATCATCACTTCCTCCAACCGGGGGCACCGATCAAGTCGTGATACCGTATTCGGATTGTGACACTTGTCAGGTATGCAATATGGAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGGGAAAGGGAAGAAGATGAAGACTAGCGAGTACAGGGGAGTGCGGCAGAGACCAGGGGGCAAATGGGCCGCGGAGATTCGGGACCCGAGTCGTGCTGTTAGGATTTGGCTCGGGACGTTTCAGACGGCTGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGACAGAGCTAAGCTAAACTTCCCGCCATCCTCGGACACTGGAACTACCAGTAGAGCATTGACTGATGAGACCAAAAGTCAAAACCAGTCCAGGAAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

191

Amino Acids

20.65

Weight (kDa)

9.04

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 156	3.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	2 cut(s)	78, 362
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	67, 179, 182
AhdI	GACNNNNNGTC	1 cut(s)	546
AjnI	CCWGG	3 cut(s)	343, 431, 560
AluBI	AGCT	3 cut(s)	470, 479, 484
AluI	AGCT	3 cut(s)	470, 479, 484
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 334, 533
Ama87I	CYCGRG	4 cut(s)	108, 376, 401, 455
AoxI	GGCC	3 cut(s)	111, 357, 450
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	111, 112, 357, 373, 451
AsuC2I	CCSGG	3 cut(s)	109, 110, 181
AvaI	CYCGRG	4 cut(s)	108, 376, 401, 455
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	2 cut(s)	115, 188
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	241, 505
BceAI	ACGGC	2 cut(s)	432, 462
BciT130I	CCWGG	3 cut(s)	345, 433, 562
BcnI	CCSGG	3 cut(s)	109, 110, 181
BcoDI	GTCTC	3 cut(s)	58, 334, 533
BfaI	CTAG	2 cut(s)	315, 571
BisI	GCNGC	6 cut(s)	128, 131, 335, 360, 429, 450
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	6 cut(s)	129, 132, 336, 361, 430, 451
Bme1390I	CCNGG	6 cut(s)	109, 110, 181, 345, 433, 562
Bme18I	GGWCC	1 cut(s)	373
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmeT110I	CYCGRG	4 cut(s)	108, 376, 401, 455
BmgT120I	GGNCC	5 cut(s)	111, 112, 357, 373, 451
BmiI	GGNNCC	4 cut(s)	113, 187, 374, 375
BmrFI	CCNGG	6 cut(s)	109, 110, 181, 345, 433, 562
BmsI	GCATC	1 cut(s)	142
BoxI	GACNNNNGTC	2 cut(s)	225, 378
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	109, 110, 181
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	2 cut(s)	334, 533
BsaJI	CCNNGG	9 cut(s)	27, 76, 108, 180, 259, 344, 360, 432, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 179, 182
Bse1I	ACTGG	3 cut(s)	514, 519, 556
BseBI	CCWGG	3 cut(s)	345, 433, 562
BseDI	CCNNGG	9 cut(s)	27, 76, 108, 180, 259, 344, 360, 432, 501
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	3 cut(s)	67, 179, 182
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	514, 519, 556
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	2 cut(s)	115, 188
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	2 cut(s)	78, 362
BshFI	GGCC	3 cut(s)	113, 359, 452
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	4 cut(s)	108, 376, 401, 455
BsiSI	CCGG	3 cut(s)	15, 109, 180
BslFI	GGGAC	2 cut(s)	386, 418
BslI	CCNNNNNNNGG	3 cut(s)	67, 179, 182
BsmAI	GTCTC	3 cut(s)	58, 334, 533
BsmFI	GGGAC	2 cut(s)	386, 418
BsnI	GGCC	3 cut(s)	113, 359, 452
Bso31I	GGTCTC	2 cut(s)	334, 533
BsoBI	CYCGRG	4 cut(s)	108, 376, 401, 455
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	3 cut(s)	42, 115, 188
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	480
BspANI	GGCC	3 cut(s)	113, 359, 452
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	2 cut(s)	78, 362
BspLI	GGNNCC	4 cut(s)	113, 187, 374, 375
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	2 cut(s)	334, 533
BsrI	ACTGG	3 cut(s)	514, 519, 556
BssECI	CCNNGG	9 cut(s)	27, 76, 108, 180, 259, 344, 360, 432, 501
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	27, 259
Bst2UI	CCWGG	3 cut(s)	345, 433, 562
Bst4CI	ACNGT	2 cut(s)	156, 207
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	42, 287
BstDEI	CTNAG	2 cut(s)	420, 480
BstDSI	CCRYGG	2 cut(s)	76, 360
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	497
BstFNI	CGCG	2 cut(s)	78, 362
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	58, 334, 533
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 286, 425, 434, 476
BstNI	CCWGG	3 cut(s)	345, 433, 562
BstPAI	GACNNNNGTC	2 cut(s)	225, 378
BstSCI	CCNGG	6 cut(s)	107, 108, 179, 343, 431, 560
BstSLI	GKGCMC	2 cut(s)	115, 188
BstUI	CGCG	2 cut(s)	78, 362
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	113, 359, 452
BtgI	CCRYGG	2 cut(s)	76, 360
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	2 cut(s)	42, 287
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	111, 112, 357, 373, 451
Cfr42I	CCGCGG	2 cut(s)	79, 363
Cfr9I	CCCGGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	322
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	420, 480
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DriI	GACNNNNNGTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	27, 259
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	2 cut(s)	334, 533
Eco47I	GGWCC	1 cut(s)	373
Eco88I	CYCGRG	4 cut(s)	108, 376, 401, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	3 cut(s)	343, 431, 560
EcoT14I	CCWWGG	2 cut(s)	27, 259
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	27, 259
FaiI	YATR	4 cut(s)	144, 235, 242, 441
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	2 cut(s)	386, 418
FauI	CCCGC	2 cut(s)	285, 501
Fnu4HI	GCNGC	6 cut(s)	128, 131, 335, 360, 429, 450
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	6 cut(s)	128, 131, 335, 360, 429, 450
FspBI	CTAG	2 cut(s)	315, 571
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	6 cut(s)	128, 131, 335, 360, 429, 450
HaeIII	GGCC	3 cut(s)	113, 359, 452
HapII	CCGG	3 cut(s)	15, 109, 180
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	367, 379
HpaII	CCGG	3 cut(s)	15, 109, 180
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	89, 214, 414, 505
Hpy188III	TCNNGA	3 cut(s)	199, 371, 403
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	156, 207
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	101, 237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 286, 425, 434, 476
HpyF3I	CTNAG	2 cut(s)	420, 480
HpySE526I	ACGT	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	373
KspI	CCGCGG	2 cut(s)	79, 363
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	3 cut(s)	31, 37, 467
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	315, 571
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	313, 316, 322
MhlI	GDGCHC	3 cut(s)	42, 115, 188
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	71, 115, 169, 183, 415, 418, 464, 511
MspA1I	CMGCKG	2 cut(s)	78, 362
MspI	CCGG	3 cut(s)	15, 109, 180
MspR9I	CCNGG	6 cut(s)	109, 110, 181, 345, 433, 562
MvaI	CCWGG	3 cut(s)	345, 433, 562
MvnI	CGCG	2 cut(s)	78, 362
MwoI	GCNNNNNNNGC	5 cut(s)	127, 286, 425, 434, 476
NciI	CCSGG	3 cut(s)	109, 110, 181
NdeII	GATC	1 cut(s)	190
NlaIV	GGNNCC	4 cut(s)	113, 187, 374, 375
NmuCI	GTSAC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	6 cut(s)	129, 132, 336, 361, 430, 451
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	373
PshAI	GACNNNNGTC	2 cut(s)	225, 378
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	343, 431, 560
PspGI	CCWGG	3 cut(s)	343, 431, 560
PspN4I	GGNNCC	4 cut(s)	113, 187, 374, 375
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	5 cut(s)	111, 112, 357, 373, 451
PspPPI	RGGWCCY	1 cut(s)	373
PspXI	VCTCGAGB	1 cut(s)	455
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacII	CCGCGG	2 cut(s)	79, 363
SatI	GCNGC	6 cut(s)	128, 131, 335, 360, 429, 450
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	5 cut(s)	111, 112, 357, 373, 451
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	6 cut(s)	109, 110, 181, 345, 433, 562
SduI	GDGCHC	3 cut(s)	42, 115, 188
SetI	ASST	6 cut(s)	72, 234, 410, 472, 481, 486
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	455
Sfr303I	CCGCGG	2 cut(s)	79, 363
SgrBI	CCGCGG	2 cut(s)	79, 363
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	455
SmaI	CCCGGG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SspMI	CTAG	2 cut(s)	315, 571
StyD4I	CCNGG	6 cut(s)	107, 108, 179, 343, 431, 560
StyI	CCWWGG	2 cut(s)	27, 259
TaaI	ACNGT	2 cut(s)	156, 207
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	456
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	5 cut(s)	130, 133, 337, 362, 452
TfiI	GAWTC	1 cut(s)	367
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	323
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	455
XmaI	CCCGGG	1 cut(s)	108
XspI	CTAG	2 cut(s)	315, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.