Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008529.1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16994 .. 17841

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008529.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgccatctcattccggcggtttacccaaggagcaggagcacgctatcattgtctccgccctgaaacaggtagtccgcggtcgcaccacccagccaccgccgccgcagctccattatgcctcatcatcacttcctccaacgggtggcaccgatcaagtcgtgatacctttttcggattgtgacacgtgtcaggtatgtaatatgaagatggacgattgccttggctgtggtttgttccggccaagcgagcaagacgaagggaaagggaaaaagatgaagacgagcaagtacaggggagtgcggcagagaccagggggaaaatgggcggcggagattcgtgacccgcgtcgcgcggttcgggtttggcttgggacgtttcagacggcggaggaggcagccagggcttatgacacggcggcgatcgagttccgaggagagagagccaagctcaacttcccgctaagcagtgaagctggtactactactactggtgcagcattgactaggcaaagcatggagactggtgaggtcaatcaagtcaccgcgagttctgtgaagtcagcgaatcaggaagagggacagagtagtgatgttaaggacgaagacatcgatcgcttcatctgggaaatgcttaaaaatgacgacggcgatgaagatttaagcacacggcagatgggagggaatgatgctgatagagtagggtctgggatgcctctcttccctttgggaaaagtacctggacaaaatcttctcttgggacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

27.61

Weight (kDa)

5.68

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	5 cut(s)	78, 346, 351, 353, 545
AcoI	YGGCCR	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	186
AfaI	GTAC	3 cut(s)	290, 478, 735
AfiI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
AflIII	ACRYGT	2 cut(s)	183, 185
AjnI	CCWGG	3 cut(s)	310, 398, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	3 cut(s)	109, 448, 473
AluI	AGCT	3 cut(s)	109, 448, 473
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 301, 512
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	106, 395, 494
AspLEI	GCGC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	532, 536
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	284, 609
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	118, 407, 506
BccI	CCATC	3 cut(s)	13, 202, 667
BceAI	ACGGC	4 cut(s)	399, 429, 661, 683
BciT130I	CCWGG	3 cut(s)	312, 400, 738
BcoDI	GTCTC	3 cut(s)	58, 301, 512
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	8 cut(s)	102, 105, 108, 303, 328, 397, 418, 496
Bme1390I	CCNGG	3 cut(s)	312, 400, 738
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	312, 400, 738
BmsI	GCATC	2 cut(s)	676, 699
BoxI	GACNNNNGTC	2 cut(s)	186, 345
BpiI	GAAGAC	2 cut(s)	284, 609
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
Bpu1102I	GCTNAGC	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 140, 143
Bse1I	ACTGG	2 cut(s)	493, 526
BseBI	CCWGG	3 cut(s)	312, 400, 738
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
BseGI	GGATG	1 cut(s)	714
BseLI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
BseNI	ACTGG	2 cut(s)	493, 526
BseRI	GAGGAG	2 cut(s)	404, 447
BseXI	GCAGC	3 cut(s)	118, 407, 506
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	5 cut(s)	78, 346, 351, 353, 545
Bsh1285I	CGRYCG	3 cut(s)	82, 423, 613
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	3 cut(s)	82, 423, 613
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	15, 238
BslFI	GGGAC	2 cut(s)	385, 591
BslI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
BsmAI	GTCTC	3 cut(s)	58, 301, 512
BsmFI	GGGAC	2 cut(s)	385, 591
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	151, 420, 610
Bsp1720I	GCTNAGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	609
BspFNI	CGCG	5 cut(s)	78, 346, 351, 353, 545
BspLI	GGNNCC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	493, 526
BssECI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
BssMI	GATC	3 cut(s)	151, 420, 610
BssT1I	CCWWGG	2 cut(s)	27, 220
Bst2UI	CCWGG	3 cut(s)	312, 400, 738
Bst6I	CTCTTC	2 cut(s)	567, 722
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	42, 248
BstDEI	CTNAG	1 cut(s)	461
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	714
BstFNI	CGCG	5 cut(s)	78, 346, 351, 353, 545
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	154, 423, 613
BstMAI	GTCTC	3 cut(s)	58, 301, 512
BstMBI	GATC	3 cut(s)	151, 420, 610
BstMCI	CGRYCG	3 cut(s)	82, 423, 613
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
BstNI	CCWGG	3 cut(s)	312, 400, 738
BstPAI	GACNNNNGTC	2 cut(s)	186, 345
BstSCI	CCNGG	3 cut(s)	310, 398, 736
BstUI	CGCG	5 cut(s)	78, 346, 351, 353, 545
BstV1I	GCAGC	3 cut(s)	118, 407, 506
BstV2I	GAAGAC	2 cut(s)	284, 609
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	714
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	42, 248
CfoI	GCGC	1 cut(s)	353
Cfr42I	CCGCGG	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	289, 477, 734
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	3 cut(s)	289, 477, 734
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	3 cut(s)	153, 422, 612
DpnII	GATC	3 cut(s)	151, 420, 610
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	567, 722
EarI	CTCTTC	2 cut(s)	567, 722
EciI	GGCGGA	3 cut(s)	46, 344, 401
Eco130I	CCWWGG	2 cut(s)	27, 220
Eco31I	GGTCTC	1 cut(s)	301
Eco72I	CACGTG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	3 cut(s)	310, 398, 736
EcoT14I	CCWWGG	2 cut(s)	27, 220
ErhI	CCWWGG	2 cut(s)	27, 220
FaeI	CATG	1 cut(s)	517
FaiI	YATR	5 cut(s)	117, 196, 203, 408, 515
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	385, 591
FatI	CATG	1 cut(s)	513
FauI	CCCGC	2 cut(s)	351, 465
Fnu4HI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
FokI	GGATG	1 cut(s)	721
Fsp4HI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	15, 238
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	334, 565
HpaII	CCGG	2 cut(s)	15, 238
HphI	GGTGA	2 cut(s)	532, 536
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	175, 381, 431
Hpy188III	TCNNGA	3 cut(s)	160, 338, 569
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	351, 647
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	185, 374
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	2 cut(s)	185, 374
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	1 cut(s)	351
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	151, 420, 610
LmnI	GCTCC	3 cut(s)	31, 37, 114
Lsp1109I	GCAGC	3 cut(s)	118, 407, 506
LweI	GCATC	2 cut(s)	676, 699
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	185, 374
MaeIII	GTNAC	3 cut(s)	179, 338, 538
MalI	GATC	3 cut(s)	153, 422, 612
MboI	GATC	3 cut(s)	151, 420, 610
MboII	GAAGA	7 cut(s)	217, 289, 584, 614, 665, 709, 740
MhlI	GDGCHC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	130, 144, 382, 385, 425, 520, 568, 671, 723
MseI	TTAA	4 cut(s)	594, 633, 659, 763
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	15, 238
MspR9I	CCNGG	3 cut(s)	312, 400, 738
MvaI	CCWGG	3 cut(s)	312, 400, 738
MvnI	CGCG	5 cut(s)	78, 346, 351, 353, 545
MwoI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
NdeII	GATC	3 cut(s)	151, 420, 610
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	179, 338, 538
PcsI	WCGNNNNNNNCGW	2 cut(s)	343, 606
PfeI	GAWTC	2 cut(s)	334, 565
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	8 cut(s)	102, 105, 108, 303, 328, 397, 418, 496
Ple19I	CGATCG	2 cut(s)	423, 613
PmaCI	CACGTG	1 cut(s)	186
PmlI	CACGTG	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	186
PshAI	GACNNNNGTC	2 cut(s)	186, 345
Psp6I	CCWGG	3 cut(s)	310, 398, 736
PspCI	CACGTG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	3 cut(s)	310, 398, 736
PspN4I	GGNNCC	1 cut(s)	148
PvuI	CGATCG	2 cut(s)	423, 613
RsaI	GTAC	3 cut(s)	290, 478, 735
RsaNI	GTAC	3 cut(s)	289, 477, 734
SacII	CCGCGG	1 cut(s)	79
SaqAI	TTAA	4 cut(s)	594, 633, 659, 763
SatI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
Sau3AI	GATC	3 cut(s)	151, 420, 610
ScrFI	CCNGG	3 cut(s)	312, 400, 738
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	676, 699
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	310, 398, 736
StyI	CCWWGG	2 cut(s)	27, 220
TaiI	ACGT	2 cut(s)	188, 377
TaqI	TCGA	2 cut(s)	423, 609
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	5 cut(s)	103, 106, 304, 329, 419
TfiI	GAWTC	2 cut(s)	334, 565
Tru1I	TTAA	4 cut(s)	594, 633, 659, 763
Tru9I	TTAA	4 cut(s)	594, 633, 659, 763
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	179, 338, 538
TseI	GCWGC	3 cut(s)	106, 395, 494
Tsp45I	GTSAC	3 cut(s)	179, 338, 538
TspDTI	ATGAA	4 cut(s)	218, 290, 607, 666
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.