Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

32311302 .. 32312322

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0292600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGAAACCATCAACAACAACCCTCTTCTTATGGACACCGACGACGAGGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACATACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCGCTTCTCTCTCCCACATCATTCTCTCACACCCACCACCGCCGCCGCCGCCATCGTCGTCGTCTCCGTCTTTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTTCCCGAGGACACAGTCCCCTTCCCCTTTCCTTCGCTGATCGCAGCTCCGATTCCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGTGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCACCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGCGTGGACCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGTGTACTTGTTCAGGAAGGTTGATGTGAACAGGGTTCGGGCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

263

Amino Acids

29.07

Weight (kDa)

5.98

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	455, 485, 532
AciI	CCGC	8 cut(s)	213, 251, 254, 257, 260, 401, 483, 532
AclWI	GGATC	2 cut(s)	105, 295
AcoI	YGGCCR	1 cut(s)	582
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	4 cut(s)	21, 490, 641, 752
AfiI	CCNNNNNNNGG	2 cut(s)	284, 738
AgsI	TTSAA	3 cut(s)	309, 442, 607
AjiI	CACGTC	1 cut(s)	324
AluBI	AGCT	5 cut(s)	16, 148, 392, 445, 700
AluI	AGCT	5 cut(s)	16, 148, 392, 445, 700
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	180, 279
AlwI	GGATC	2 cut(s)	105, 295
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	411, 516, 582, 675
ApeKI	GCWGC	2 cut(s)	389, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	411, 597, 675
AsuC2I	CCSGG	2 cut(s)	410, 679
AsuHPI	GGTGA	3 cut(s)	145, 282, 529
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	150, 580
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	401, 497
BccI	CCATC	2 cut(s)	53, 271
BceAI	ACGGC	1 cut(s)	442
BcnI	CCSGG	2 cut(s)	410, 679
BcoDI	GTCTC	2 cut(s)	180, 279
BisI	GCNGC	7 cut(s)	254, 257, 260, 390, 483, 511, 533
BlsI	GCNGC	7 cut(s)	255, 258, 261, 391, 484, 512, 534
Bme1390I	CCNGG	2 cut(s)	410, 679
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	411, 597, 675
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	410, 679
BmsI	GCATC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	410, 679
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	351, 678
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 738
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	2 cut(s)	109, 119
BseDI	CCNNGG	2 cut(s)	351, 678
BseGI	GGATG	2 cut(s)	317, 775
BseLI	CCNNNNNNNGG	2 cut(s)	284, 738
BseMI	GCAATG	2 cut(s)	109, 119
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	4 cut(s)	98, 101, 104, 107
BseXI	GCAGC	2 cut(s)	401, 497
Bsh1236I	CGCG	3 cut(s)	455, 485, 532
BshFI	GGCC	4 cut(s)	413, 518, 584, 677
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	409, 540, 585, 678
BslFI	GGGAC	2 cut(s)	310, 347
BslI	CCNNNNNNNGG	2 cut(s)	284, 738
BsmAI	GTCTC	2 cut(s)	180, 279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	310, 347
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	4 cut(s)	413, 518, 584, 677
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	150, 580
Bsp143I	GATC	3 cut(s)	97, 287, 384
BspACI	CCGC	8 cut(s)	213, 251, 254, 257, 260, 401, 483, 532
BspANI	GGCC	4 cut(s)	413, 518, 584, 677
BspCNI	CTCAG	1 cut(s)	693
BspFNI	CGCG	3 cut(s)	455, 485, 532
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	105, 295
BsrDI	GCAATG	2 cut(s)	109, 119
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	351, 678
BssMI	GATC	3 cut(s)	97, 287, 384
BssNI	GRCGYC	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	294, 361, 623
Bst6I	CTCTTC	2 cut(s)	66, 351
BstACI	GRCGYC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	612, 701
BstF5I	GGATG	2 cut(s)	317, 775
BstFNI	CGCG	3 cut(s)	455, 485, 532
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	3 cut(s)	100, 290, 387
BstMAI	GTCTC	2 cut(s)	180, 279
BstMBI	GATC	3 cut(s)	97, 287, 384
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 259, 479, 529, 590, 706
BstSCI	CCNGG	2 cut(s)	408, 677
BstUI	CGCG	3 cut(s)	455, 485, 532
BstV1I	GCAGC	2 cut(s)	401, 497
BstV2I	GAAGAC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	4 cut(s)	413, 518, 584, 677
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	317, 775
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	411, 597, 675
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	4 cut(s)	20, 489, 640, 751
CviAII	CATG	4 cut(s)	190, 196, 312, 789
CviQI	GTAC	4 cut(s)	20, 489, 640, 751
DdeI	CTNAG	2 cut(s)	612, 701
DpnI	GATC	3 cut(s)	99, 289, 386
DpnII	GATC	3 cut(s)	97, 287, 384
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	66, 351
EarI	CTCTTC	2 cut(s)	66, 351
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	150, 580
Eco47I	GGWCC	1 cut(s)	597
Eco53kI	GAGCTC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	150, 580
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	4 cut(s)	193, 199, 315, 792
FaiI	YATR	9 cut(s)	68, 163, 179, 191, 197, 313, 470, 764, 790
FaqI	GGGAC	2 cut(s)	310, 347
FatI	CATG	4 cut(s)	189, 195, 311, 788
Fnu4HI	GCNGC	7 cut(s)	254, 257, 260, 390, 483, 511, 533
FokI	GGATG	2 cut(s)	304, 782
FriOI	GRGCYC	2 cut(s)	150, 580
Fsp4HI	GCNGC	7 cut(s)	254, 257, 260, 390, 483, 511, 533
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	7 cut(s)	254, 257, 260, 390, 483, 511, 533
HaeIII	GGCC	4 cut(s)	413, 518, 584, 677
HapII	CCGG	4 cut(s)	409, 540, 585, 678
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	4 cut(s)	193, 199, 315, 792
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	168, 397, 691
HpaII	CCGG	4 cut(s)	409, 540, 585, 678
HphI	GGTGA	3 cut(s)	145, 282, 529
Hpy166II	GTNNAC	4 cut(s)	336, 597, 640, 664
Hpy188I	TCNGA	3 cut(s)	38, 396, 463
Hpy188III	TCNNGA	6 cut(s)	350, 421, 429, 607, 649, 695
Hpy8I	GTNNAC	4 cut(s)	336, 597, 640, 664
Hpy99I	CGWCG	5 cut(s)	80, 83, 271, 274, 463
HpyAV	CCTTC	5 cut(s)	315, 376, 387, 424, 646
HpyCH4III	ACNGT	3 cut(s)	294, 361, 623
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	4 cut(s)	205, 468, 713, 748
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 259, 479, 529, 590, 706
HpyF3I	CTNAG	2 cut(s)	612, 701
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	193, 199, 315, 792
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	97, 287, 384
LmnI	GCTCC	4 cut(s)	9, 129, 397, 697
Lsp1109I	GCAGC	2 cut(s)	401, 497
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	151, 476
MalI	GATC	3 cut(s)	99, 289, 386
MboI	GATC	3 cut(s)	97, 287, 384
MboII	GAAGA	6 cut(s)	25, 53, 333, 338, 749, 769
MhlI	GDGCHC	2 cut(s)	150, 580
MluCI	AATT	1 cut(s)	505
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	4 cut(s)	409, 540, 585, 678
MspR9I	CCNGG	2 cut(s)	410, 679
Mva1269I	GAATGC	1 cut(s)	733
MvnI	CGCG	3 cut(s)	455, 485, 532
MwoI	GCNNNNNNNGC	6 cut(s)	179, 259, 479, 529, 590, 706
NciI	CCSGG	2 cut(s)	410, 679
NdeII	GATC	3 cut(s)	97, 287, 384
NlaIII	CATG	4 cut(s)	193, 199, 315, 792
NlaIV	GGNNCC	1 cut(s)	599
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	151, 476
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 329
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	397, 691
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	7 cut(s)	255, 258, 261, 391, 484, 512, 534
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	3 cut(s)	411, 597, 675
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	4 cut(s)	21, 490, 641, 752
RsaNI	GTAC	4 cut(s)	20, 489, 640, 751
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	7 cut(s)	254, 257, 260, 390, 483, 511, 533
Sau3AI	GATC	3 cut(s)	97, 287, 384
Sau96I	GGNCC	3 cut(s)	411, 597, 675
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	410, 679
SduI	GDGCHC	2 cut(s)	150, 580
SetI	ASST	9 cut(s)	18, 150, 326, 394, 436, 447, 657, 702, 707
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	8 cut(s)	213, 251, 254, 257, 260, 401, 483, 532
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	408, 677
TaaI	ACNGT	3 cut(s)	294, 361, 623
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	572
TasI	AATT	1 cut(s)	505
TatI	WGTACW	2 cut(s)	639, 750
TauI	GCSGC	5 cut(s)	256, 259, 262, 485, 535
TfiI	GAWTC	2 cut(s)	397, 691
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	151, 476
TseI	GCWGC	2 cut(s)	389, 510
Tsp45I	GTSAC	2 cut(s)	151, 476
TspGWI	ACGGA	2 cut(s)	267, 782
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.