Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

47251525 .. 47251974

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAAGCAGTGGAACTAAAATGACCTCGCATTCCGGCGGTTTACTCAAGGAGAAGGAGGACGCAATCATTGTCTCCGCCCTGCATGAAACAGCCACCGCCGCCGCCGCAGCTCCATCACTTCCTCTAACGGGGGGCAGCGATCAAGTCGTGACACCATATTCGGATTGTGACAGGTGTCAGGCATGTAATATGGAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAATCCAAAGCGAAAGGGAAGAAGATGAAGACCAGCAAGTACAGGGGAGTGCGGCAGAGGCCCGGGGGGCAAATGGGCGGCGGAGATTCTGGACCCGCGTCCAGCGGTTCGGGTTTGGCTCGAGACTTTCCAAACGGCGGAGGTGGCAGCCAGGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

134

Amino Acids

13.47

Weight (kDa)

6.71

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	131, 377
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	2 cut(s)	79, 357
Ama87I	CYCGRG	2 cut(s)	302, 360
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	110, 138, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspS9I	GGNCC	2 cut(s)	300, 332
AsuC2I	CCSGG	2 cut(s)	303, 304
AvaI	CYCGRG	2 cut(s)	302, 360
AvaII	GGWCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	122, 150
BccI	CCATC	2 cut(s)	124, 193
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	2 cut(s)	303, 304
BcoDI	GTCTC	2 cut(s)	79, 357
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	8 cut(s)	102, 105, 108, 111, 139, 293, 319, 388
BlsI	GCNGC	8 cut(s)	103, 106, 109, 112, 140, 294, 320, 389
Bme1390I	CCNGG	3 cut(s)	303, 304, 392
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	2 cut(s)	302, 360
BmgT120I	GGNCC	2 cut(s)	300, 332
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	3 cut(s)	303, 304, 392
BoxI	GACNNNNGTC	2 cut(s)	177, 337
BpiI	GAAGAC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	303, 304
BsaJI	CCNNGG	4 cut(s)	211, 302, 303, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 377
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	4 cut(s)	211, 302, 303, 391
BseLI	CCNNNNNNNGG	2 cut(s)	131, 377
BseXI	GCAGC	2 cut(s)	122, 150
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	301
BsiHKCI	CYCGRG	2 cut(s)	302, 360
BsiSI	CCGG	2 cut(s)	36, 303
BslI	CCNNNNNNNGG	2 cut(s)	131, 377
BsmAI	GTCTC	2 cut(s)	79, 357
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	2 cut(s)	302, 360
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	211, 302, 303, 391
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	79, 357
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 107, 110, 238, 298, 307, 384
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	189
BstPAI	GACNNNNGTC	2 cut(s)	177, 337
BstSCI	CCNGG	3 cut(s)	301, 302, 390
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	122, 150
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	300, 332
Cfr9I	CCCGGG	1 cut(s)	302
CseI	GACGC	2 cut(s)	71, 327
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	86, 186
CviJI	RGCY	6 cut(s)	95, 113, 216, 301, 359, 390
CviKI_1	RGCY	6 cut(s)	95, 113, 216, 301, 359, 390
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EciI	GGCGGA	3 cut(s)	67, 336, 393
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	302, 360
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	89, 189
FaiI	YATR	5 cut(s)	87, 160, 187, 194, 400
FatI	CATG	2 cut(s)	85, 185
FauI	CCCGC	2 cut(s)	237, 343
Fnu4HI	GCNGC	8 cut(s)	102, 105, 108, 111, 139, 293, 319, 388
Fsp4HI	GCNGC	8 cut(s)	102, 105, 108, 111, 139, 293, 319, 388
GluI	GCNGC	8 cut(s)	102, 105, 108, 111, 139, 293, 319, 388
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	36, 303
HgaI	GACGC	2 cut(s)	71, 327
Hin1II	CATG	2 cut(s)	89, 189
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	2 cut(s)	36, 303
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	151, 330, 362
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 107, 110, 238, 298, 307, 384
Hsp92II	CATG	2 cut(s)	89, 189
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	122, 150
MaeIII	GTNAC	2 cut(s)	151, 170
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	271, 274, 280
MnlI	CCTC	5 cut(s)	37, 52, 135, 291, 374
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	2 cut(s)	36, 303
MspR9I	CCNGG	3 cut(s)	303, 304, 392
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	7 cut(s)	101, 107, 110, 238, 298, 307, 384
NciI	CCSGG	2 cut(s)	303, 304
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	89, 189
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	151, 170
NspI	RCATGY	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	360
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	8 cut(s)	103, 106, 109, 112, 140, 294, 320, 389
PshAI	GACNNNNGTC	2 cut(s)	177, 337
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	300, 332
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	8 cut(s)	102, 105, 108, 111, 139, 293, 319, 388
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	300, 332
ScrFI	CCNGG	3 cut(s)	303, 304, 392
SetI	ASST	4 cut(s)	29, 115, 179, 385
Sfr274I	CTCGAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	360
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	47, 360
SmoI	CTYRAG	2 cut(s)	47, 360
StyD4I	CCNGG	3 cut(s)	301, 302, 390
StyI	CCWWGG	1 cut(s)	211
TaqI	TCGA	1 cut(s)	361
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	5 cut(s)	104, 107, 110, 295, 321
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	151, 170
TseI	GCWGC	3 cut(s)	110, 138, 387
Tsp45I	GTSAC	2 cut(s)	151, 170
TspDTI	ATGAA	2 cut(s)	102, 281
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	332
XceI	RCATGY	1 cut(s)	189
XhoI	CTCGAG	1 cut(s)	360
XmaI	CCCGGG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.