Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

15481173 .. 15481799

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCCTCGCATTCCGGGGGTTTGCCGAAAGAGCAGGAGCACGCAATCATGGTCTCCGCCCTTAAACAGGTCATCTGCTGCGGCGGCGGCCGCATTGCTTCCAGAAGCAGCGGACACTCTCGGCCAGCAGTTGAAGGTGGAAGTGGAACAAAGAAGGTTGTGATATCAATTTCGGATGGCGACACGTGCCAGGTGTGCAGGATCGACGGCTGCCTCGGCTGCGAGTTCTTCCCGCCAAGCAAGCCGGACAAAGGGAAGAGGATCAAGAAGGGCAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGGGATCCGCAGCAGGCGGCGAGGGTTTGGCTCGGGACGTTCAAGACGGCTGAGGAAGCGGCCAGGGCTTATGACAAGGCTGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCACTAAGCAGTGAAGCTGGTACTACTAGTGCAGCATGGACTACGCAAAGCATGGAGACTGGTGAGGTCAATCAAGTCAACGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGCAGTGATGTTAAGGACGAAGACATTGATCGTTTCATCTGGGAAATGCTTAAAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

22.64

Weight (kDa)

8.72

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	92 - 141	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	527
AclWI	GGATC	4 cut(s)	209, 269, 323, 336
AcoI	YGGCCR	3 cut(s)	88, 122, 384
AcvI	CACGTG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	278, 466
AfiI	CCNNNNNNNGG	2 cut(s)	67, 251
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	134, 367
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	189, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	436, 461
AluI	AGCT	2 cut(s)	436, 461
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	58, 494
AlwI	GGATC	4 cut(s)	209, 269, 323, 336
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	4 cut(s)	88, 122, 296, 384
ApeKI	GCWGC	7 cut(s)	78, 108, 210, 219, 334, 404, 476
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbrPI	CACGTG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	7 cut(s)	65, 120, 197, 206, 346, 391, 488
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	3 cut(s)	223, 283, 387
BciT130I	CCWGG	2 cut(s)	191, 388
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	58, 494
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
Bme1390I	CCNGG	3 cut(s)	16, 191, 388
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	16, 191, 388
BpiI	GAAGAC	1 cut(s)	591
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
Bpu10I	CCTNAGC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	15, 214, 299, 387, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 251
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	191, 388
BseDI	CCNNGG	5 cut(s)	15, 214, 299, 387, 418
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	67, 251
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	7 cut(s)	65, 120, 197, 206, 346, 391, 488
BsgI	GTGCAG	2 cut(s)	217, 495
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	2 cut(s)	91, 411
BshFI	GGCC	4 cut(s)	90, 124, 298, 386
BsiEI	CGRYCG	2 cut(s)	91, 411
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	15, 245
BslFI	GGGAC	2 cut(s)	373, 573
BslI	CCNNNNNNNGG	2 cut(s)	67, 251
BsmAI	GTCTC	2 cut(s)	58, 494
BsmFI	GGGAC	2 cut(s)	373, 573
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	90, 124, 298, 386
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
BspANI	GGCC	4 cut(s)	90, 124, 298, 386
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	4 cut(s)	209, 269, 323, 336
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	5 cut(s)	15, 214, 299, 387, 418
BssMI	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
Bst2UI	CCWGG	2 cut(s)	191, 388
Bst6I	CTCTTC	2 cut(s)	251, 549
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	4 cut(s)	42, 126, 242, 339
BstDEI	CTNAG	2 cut(s)	375, 449
BstDSI	CCRYGG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	527
BstKTI	GATC	6 cut(s)	204, 264, 331, 411, 595, 622
BstMAI	GTCTC	2 cut(s)	58, 494
BstMBI	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
BstMCI	CGRYCG	2 cut(s)	91, 411
BstNI	CCWGG	2 cut(s)	191, 388
BstSCI	CCNGG	3 cut(s)	14, 189, 386
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	7 cut(s)	65, 120, 197, 206, 346, 391, 488
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	90, 124, 298, 386
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	2 cut(s)	460, 574
BtsIMutI	CAGTG	2 cut(s)	460, 574
Cac8I	GCNNGC	4 cut(s)	42, 126, 242, 339
CciNI	GCGGCCGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	277, 465
CviAII	CATG	3 cut(s)	49, 480, 496
CviQI	GTAC	2 cut(s)	277, 465
DdeI	CTNAG	2 cut(s)	375, 449
DpnI	GATC	6 cut(s)	203, 263, 330, 410, 594, 621
DpnII	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
EaeI	YGGCCR	3 cut(s)	88, 122, 384
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	251, 549
EarI	CTCTTC	2 cut(s)	251, 549
EciI	GGCGGA	2 cut(s)	46, 332
EclXI	CGGCCG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	165
Eco52I	CGGCCG	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	189, 386
EcoRV	GATATC	1 cut(s)	165
FaeI	CATG	3 cut(s)	52, 483, 499
FaiI	YATR	4 cut(s)	50, 396, 481, 497
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	2 cut(s)	373, 573
FatI	CATG	3 cut(s)	48, 479, 495
FauI	CCCGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	90, 124, 298, 386
HapII	CCGG	2 cut(s)	15, 245
Hin1II	CATG	3 cut(s)	52, 483, 499
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	322, 547
HpaII	CCGG	2 cut(s)	15, 245
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	175, 419
Hpy188III	TCNNGA	6 cut(s)	102, 265, 326, 358, 367, 551
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	128, 148, 262
HpyCH4IV	ACGT	2 cut(s)	185, 362
HpyCH4V	TGCA	2 cut(s)	198, 476
HpyF3I	CTNAG	2 cut(s)	375, 449
HpySE526I	ACGT	2 cut(s)	185, 362
Hsp92II	CATG	3 cut(s)	52, 483, 499
Kzo9I	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	7 cut(s)	65, 120, 197, 206, 346, 391, 488
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	185, 362
MalI	GATC	6 cut(s)	203, 263, 330, 410, 594, 621
MboI	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
MboII	GAAGA	4 cut(s)	220, 268, 566, 596
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	168
MseI	TTAA	3 cut(s)	63, 576, 615
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	15, 245
MspR9I	CCNGG	3 cut(s)	16, 191, 388
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	191, 388
MvnI	CGCG	1 cut(s)	527
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
NlaIII	CATG	3 cut(s)	52, 483, 499
NlaIV	GGNNCC	1 cut(s)	330
NmeAIII	GCCGAG	2 cut(s)	100, 195
NotI	GCGGCCGC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	322, 547
Ple19I	CGATCG	1 cut(s)	411
PmaCI	CACGTG	1 cut(s)	186
PmlI	CACGTG	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	189, 386
PspCI	CACGTG	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	189, 386
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	328
PvuI	CGATCG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	278, 466
RsaNI	GTAC	2 cut(s)	277, 465
SaqAI	TTAA	3 cut(s)	63, 576, 615
Sau3AI	GATC	6 cut(s)	201, 261, 328, 408, 592, 619
ScrFI	CCNGG	3 cut(s)	16, 191, 388
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	72, 139, 159, 188, 195, 365, 438, 463, 513
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	14, 189, 386
TaiI	ACGT	2 cut(s)	188, 365
TaqI	TCGA	2 cut(s)	204, 411
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	7 cut(s)	84, 87, 90, 93, 317, 344, 386
TfiI	GAWTC	2 cut(s)	322, 547
Tru1I	TTAA	3 cut(s)	63, 576, 615
Tru9I	TTAA	3 cut(s)	63, 576, 615
TscAI	CASTG	2 cut(s)	460, 574
TseI	GCWGC	7 cut(s)	78, 108, 210, 219, 334, 404, 476
TspDTI	ATGAA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	460, 574
XagI	CCTNNNNNAGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.