Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

52654891 .. 52657278

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCGCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTCAAACAGGTAGTCCGCGGTGGCGTTAGAACAAACAATGCACCCTCCCAGCCCCACCAGCCACCGCCGCCGCAGCGGATCTATTATGCCTCATCATCACTTCCTCCAACGGAGGGCGCCGATCAAGTCGTGATACCGTATTCGGATTCTGACACGTGTCCGGTATGTAAGATGGAGACGGACGATTGCCTTGGCTGTGGCTTGTTCCCGCCAAGCGAGCAATATTACAAAGGGAAAGGGAAGAAGATGAAGACTAGCGAGTACAGGGGAGTGCGGCAGAGACCAGGGGGCAAATGGGCCGCGGAGATTCGGGACCCGCGTCGCGCGGCTCGGGTTTGGCTCGGGACGTTTCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGATAGAGCTAAGCTAAACTTCCCCCCATCCTCGGACACTGGTGGTACTACCAGTAGAGCATTGACTGATGAGACCAAAAGTCCAGGAAGTCGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.65

Weight (kDa)

9.06

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 156	3.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	5 cut(s)	78, 362, 379, 384, 386
AclWI	GGATC	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	323, 517, 565
AfiI	CCNNNNNNNGG	3 cut(s)	67, 173, 502
AflIII	ACRYGT	2 cut(s)	213, 215
AhdI	GACNNNNNGTC	1 cut(s)	549
AjnI	CCWGG	3 cut(s)	343, 431, 553
AluBI	AGCT	3 cut(s)	470, 479, 484
AluI	AGCT	3 cut(s)	470, 479, 484
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	4 cut(s)	58, 230, 334, 536
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	3 cut(s)	390, 401, 455
AoxI	GGCC	2 cut(s)	357, 450
ApeKI	GCWGC	2 cut(s)	133, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	3 cut(s)	6, 179, 386
AspS9I	GGNCC	3 cut(s)	357, 373, 451
AvaI	CYCGRG	3 cut(s)	390, 401, 455
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	176
BbrPI	CACGTG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	145, 440
BccI	CCATC	2 cut(s)	226, 505
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	3 cut(s)	345, 433, 555
BcoDI	GTCTC	4 cut(s)	58, 230, 334, 536
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	8 cut(s)	128, 131, 134, 335, 360, 387, 429, 450
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	8 cut(s)	129, 132, 135, 336, 361, 388, 430, 451
Bme1390I	CCNGG	3 cut(s)	345, 433, 555
Bme18I	GGWCC	1 cut(s)	373
BmeRI	GACNNNNNGTC	1 cut(s)	549
BmeT110I	CYCGRG	3 cut(s)	390, 401, 455
BmgT120I	GGNCC	3 cut(s)	357, 373, 451
BmiI	GGNNCC	3 cut(s)	178, 374, 375
BmrFI	CCNGG	3 cut(s)	345, 433, 555
BoxI	GACNNNNGTC	2 cut(s)	216, 378
BpiI	GAAGAC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	334, 536
BsaJI	CCNNGG	7 cut(s)	27, 76, 250, 344, 360, 432, 501
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 173, 502
Bse1I	ACTGG	2 cut(s)	514, 522
BseBI	CCWGG	3 cut(s)	345, 433, 555
BseDI	CCNNGG	7 cut(s)	27, 76, 250, 344, 360, 432, 501
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	3 cut(s)	67, 173, 502
BseNI	ACTGG	2 cut(s)	514, 522
BseRI	GAGGAG	2 cut(s)	434, 437
BseXI	GCAGC	2 cut(s)	145, 440
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	5 cut(s)	78, 362, 379, 384, 386
BshFI	GGCC	2 cut(s)	359, 452
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	3 cut(s)	390, 401, 455
BsiSI	CCGG	2 cut(s)	15, 221
BslFI	GGGAC	2 cut(s)	386, 418
BslI	CCNNNNNNNGG	3 cut(s)	67, 173, 502
BsmAI	GTCTC	4 cut(s)	58, 230, 334, 536
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	386, 418
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	359, 452
Bso31I	GGTCTC	2 cut(s)	334, 536
BsoBI	CYCGRG	3 cut(s)	390, 401, 455
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	138, 181
Bsp1720I	GCTNAGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	359, 452
BspFNI	CGCG	5 cut(s)	78, 362, 379, 384, 386
BspLI	GGNNCC	3 cut(s)	178, 374, 375
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	2 cut(s)	334, 536
BsrI	ACTGG	2 cut(s)	514, 522
BssECI	CCNNGG	7 cut(s)	27, 76, 250, 344, 360, 432, 501
BssMI	GATC	2 cut(s)	138, 181
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	27, 250
Bst2UI	CCWGG	3 cut(s)	345, 433, 555
Bst4CI	ACNGT	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	8, 42, 278
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	2 cut(s)	76, 360
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	497
BstFNI	CGCG	5 cut(s)	78, 362, 379, 384, 386
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	6, 179, 386
BstKTI	GATC	2 cut(s)	141, 184
BstMAI	GTCTC	4 cut(s)	58, 230, 334, 536
BstMBI	GATC	2 cut(s)	138, 181
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 127, 133, 277, 434, 476
BstNI	CCWGG	3 cut(s)	345, 433, 555
BstPAI	GACNNNNGTC	2 cut(s)	216, 378
BstSCI	CCNGG	3 cut(s)	343, 431, 553
BstUI	CGCG	5 cut(s)	78, 362, 379, 384, 386
BstV1I	GCAGC	2 cut(s)	145, 440
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	359, 452
BtgI	CCRYGG	2 cut(s)	76, 360
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	3 cut(s)	8, 42, 278
CfoI	GCGC	3 cut(s)	6, 179, 386
Cfr13I	GGNCC	3 cut(s)	357, 373, 451
Cfr42I	CCGCGG	2 cut(s)	79, 363
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	322, 516, 564
CviQI	GTAC	3 cut(s)	322, 516, 564
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	2 cut(s)	140, 183
DpnII	GATC	2 cut(s)	138, 181
DriI	GACNNNNNGTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	27, 250
Eco31I	GGTCTC	2 cut(s)	334, 536
Eco47I	GGWCC	1 cut(s)	373
Eco72I	CACGTG	1 cut(s)	216
Eco88I	CYCGRG	3 cut(s)	390, 401, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	3 cut(s)	343, 431, 553
EcoT14I	CCWWGG	2 cut(s)	27, 250
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	27, 250
Esp3I	CGTCTC	1 cut(s)	230
FaiI	YATR	4 cut(s)	147, 226, 441, 568
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	2 cut(s)	386, 418
FauI	CCCGC	2 cut(s)	276, 384
Fnu4HI	GCNGC	8 cut(s)	128, 131, 134, 335, 360, 387, 429, 450
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	8 cut(s)	128, 131, 134, 335, 360, 387, 429, 450
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	3 cut(s)	5, 178, 385
GluI	GCNGC	8 cut(s)	128, 131, 134, 335, 360, 387, 429, 450
GsaI	CCCAGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	359, 452
HapII	CCGG	2 cut(s)	15, 221
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	3 cut(s)	6, 179, 386
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	3 cut(s)	4, 177, 384
HinP1I	GCGC	3 cut(s)	4, 177, 384
HinfI	GANTC	2 cut(s)	206, 367
HpaII	CCGG	2 cut(s)	15, 221
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	205, 211, 414, 505
Hpy188III	TCNNGA	3 cut(s)	190, 371, 403
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	2 cut(s)	215, 407
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 127, 133, 277, 434, 476
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	2 cut(s)	215, 407
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	3 cut(s)	4, 177, 384
KasI	GGCGCC	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	373
KspI	CCGCGG	2 cut(s)	79, 363
Kzo9I	GATC	2 cut(s)	138, 181
LmnI	GCTCC	3 cut(s)	31, 37, 467
Lsp1109I	GCAGC	2 cut(s)	145, 440
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	215, 407
MalI	GATC	2 cut(s)	140, 183
MboI	GATC	2 cut(s)	138, 181
MboII	GAAGA	3 cut(s)	313, 316, 322
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	42
Mly113I	GGCGCC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	191
MspA1I	CMGCKG	3 cut(s)	78, 136, 362
MspI	CCGG	2 cut(s)	15, 221
MspR9I	CCNGG	3 cut(s)	345, 433, 555
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	3 cut(s)	345, 433, 555
MvnI	CGCG	5 cut(s)	78, 362, 379, 384, 386
MwoI	GCNNNNNNNGC	6 cut(s)	118, 127, 133, 277, 434, 476
NarI	GGCGCC	1 cut(s)	177
NdeII	GATC	2 cut(s)	138, 181
NlaIV	GGNNCC	3 cut(s)	178, 374, 375
PaeR7I	CTCGAG	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	206, 367
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	8 cut(s)	129, 132, 135, 336, 361, 388, 430, 451
PluTI	GGCGCC	1 cut(s)	180
PmaCI	CACGTG	1 cut(s)	216
PmlI	CACGTG	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	373
PshAI	GACNNNNGTC	2 cut(s)	216, 378
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	343, 431, 553
PspCI	CACGTG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	343, 431, 553
PspN4I	GGNNCC	3 cut(s)	178, 374, 375
PspPI	GGNCC	3 cut(s)	357, 373, 451
PspPPI	RGGWCCY	1 cut(s)	373
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	3 cut(s)	323, 517, 565
RsaNI	GTAC	3 cut(s)	322, 516, 564
SacII	CCGCGG	2 cut(s)	79, 363
SatI	GCNGC	8 cut(s)	128, 131, 134, 335, 360, 387, 429, 450
Sau3AI	GATC	2 cut(s)	138, 181
Sau96I	GGNCC	3 cut(s)	357, 373, 451
ScrFI	CCNGG	3 cut(s)	345, 433, 555
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	72, 218, 410, 472, 481, 486
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	455
Sfr303I	CCGCGG	2 cut(s)	79, 363
SgrBI	CCGCGG	2 cut(s)	79, 363
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	343, 431, 553
StyI	CCWWGG	2 cut(s)	27, 250
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	2 cut(s)	218, 410
TaqI	TCGA	1 cut(s)	456
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	6 cut(s)	130, 133, 337, 362, 389, 452
TfiI	GAWTC	2 cut(s)	206, 367
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	133, 428
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	3 cut(s)	185, 254, 431
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	455
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.