Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001407.1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16508 .. 17092

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001407.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgaaaagcagtgggagtaaaatgcccaaggagcaggagcacgctatcattgtctccaccctgaaacgggtaatccgcggtggcgttggcacagacaatgcaccctcccagccaccgccgccgtcgacgcagctcccagcaacgggtgacaccgatcaagtcgtgataccattttcggattgtgatgacacgtgtcaggtatgtaagatggggaaggacgattgccttggctgtggtttgttcccgccaagcgagcaagagctgcaagacaaaggtaaaaaggttaagacgagcaagtacaggggagtgcggcagagaccaggaggaaaatgggccgcggagattagggaccctcgtcgcgccgttcgggtttggctcgggacgttccagacggaggaggaggcagccagggcttatgacacgaaggccctccagtttcgaggagctgacagagccaagctaaacttcccgccgtcctgggacactggtactaccagcggagcaatggctgatgagaccaaagtccaaacaagtccagtcggagagagcagcgctgctgaggatgaggaagagatggatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

21.09

Weight (kDa)

5.38

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	3 cut(s)	78, 338, 360
AclWI	GGATC	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	192
AfaI	GTAC	2 cut(s)	299, 490
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 394
AflIII	ACRYGT	2 cut(s)	189, 191
AjnI	CCWGG	3 cut(s)	319, 407, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	4 cut(s)	133, 262, 446, 460
AluI	AGCT	4 cut(s)	133, 262, 446, 460
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 310, 509
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	553
AoxI	GGCC	2 cut(s)	333, 426
ApeKI	GCWGC	5 cut(s)	130, 262, 404, 549, 554
AspLEI	GCGC	2 cut(s)	362, 554
AspS9I	GGNCC	3 cut(s)	333, 349, 427
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	577
BbrPI	CACGTG	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	5 cut(s)	142, 249, 416, 541, 561
BccI	CCATC	2 cut(s)	202, 568
BceAI	ACGGC	3 cut(s)	106, 347, 457
BciT130I	CCWGG	3 cut(s)	321, 409, 478
BcoDI	GTCTC	3 cut(s)	58, 310, 509
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	8 cut(s)	119, 131, 263, 311, 336, 405, 550, 555
BlsI	GCNGC	8 cut(s)	120, 132, 264, 312, 337, 406, 551, 556
Bme1390I	CCNGG	3 cut(s)	321, 409, 478
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	333, 349, 427
BmiI	GGNNCC	3 cut(s)	350, 351, 579
BmrFI	CCNGG	3 cut(s)	321, 409, 478
BoxI	GACNNNNGTC	3 cut(s)	192, 354, 521
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	310, 509
BsaJI	CCNNGG	6 cut(s)	27, 76, 226, 336, 408, 477
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 394
Bse1I	ACTGG	3 cut(s)	433, 490, 536
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	3 cut(s)	321, 409, 478
BseDI	CCNNGG	6 cut(s)	27, 76, 226, 336, 408, 477
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 394
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	3 cut(s)	433, 490, 536
BseRI	GAGGAG	3 cut(s)	410, 413, 456
BseXI	GCAGC	5 cut(s)	142, 249, 416, 541, 561
BseYI	CCCAGC	2 cut(s)	108, 136
Bsh1236I	CGCG	3 cut(s)	78, 338, 360
BshFI	GGCC	2 cut(s)	335, 428
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	377
BslFI	GGGAC	3 cut(s)	362, 394, 494
BslI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 394
BsmAI	GTCTC	3 cut(s)	58, 310, 509
BsmFI	GGGAC	3 cut(s)	362, 394, 494
BsnI	GGCC	2 cut(s)	335, 428
Bso31I	GGTCTC	2 cut(s)	310, 509
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	154, 577
BspANI	GGCC	2 cut(s)	335, 428
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	3 cut(s)	78, 338, 360
BspLI	GGNNCC	3 cut(s)	350, 351, 579
BspPI	GGATC	1 cut(s)	572
BspTNI	GGTCTC	2 cut(s)	310, 509
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	433, 490, 536
BssECI	CCNNGG	6 cut(s)	27, 76, 226, 336, 408, 477
BssMI	GATC	2 cut(s)	154, 577
BssT1I	CCWWGG	2 cut(s)	27, 226
Bst2UI	CCWGG	3 cut(s)	321, 409, 478
Bst6I	CTCTTC	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	42, 254
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	2 cut(s)	76, 336
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	3 cut(s)	78, 338, 360
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	362, 554
BstKTI	GATC	2 cut(s)	157, 580
BstMAI	GTCTC	3 cut(s)	58, 310, 509
BstMBI	GATC	2 cut(s)	154, 577
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 118, 127, 253, 262, 410, 452
BstNI	CCWGG	3 cut(s)	321, 409, 478
BstPAI	GACNNNNGTC	3 cut(s)	192, 354, 521
BstSCI	CCNGG	3 cut(s)	319, 407, 476
BstUI	CGCG	3 cut(s)	78, 338, 360
BstV1I	GCAGC	5 cut(s)	142, 249, 416, 541, 561
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	335, 428
BtgI	CCRYGG	2 cut(s)	76, 336
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 483
Cac8I	GCNNGC	2 cut(s)	42, 254
CfoI	GCGC	2 cut(s)	362, 554
Cfr13I	GGNCC	3 cut(s)	333, 349, 427
Cfr42I	CCGCGG	2 cut(s)	79, 339
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	298, 489
CviQI	GTAC	2 cut(s)	298, 489
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	156, 579
DpnII	GATC	2 cut(s)	154, 577
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	27, 226
Eco31I	GGTCTC	2 cut(s)	310, 509
Eco47I	GGWCC	1 cut(s)	349
Eco47III	AGCGCT	1 cut(s)	553
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	2 cut(s)	349, 427
EcoRII	CCWGG	3 cut(s)	319, 407, 476
EcoT14I	CCWWGG	2 cut(s)	27, 226
ErhI	CCWWGG	2 cut(s)	27, 226
FaiI	YATR	2 cut(s)	202, 417
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	3 cut(s)	362, 394, 494
FauI	CCCGC	2 cut(s)	252, 477
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	8 cut(s)	119, 131, 263, 311, 336, 405, 550, 555
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	8 cut(s)	119, 131, 263, 311, 336, 405, 550, 555
GlaI	GCGC	2 cut(s)	361, 553
GluI	GCNGC	8 cut(s)	119, 131, 263, 311, 336, 405, 550, 555
GsaI	CCCAGC	2 cut(s)	112, 140
GsuI	CTGGAG	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	335, 428
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	362, 554
Hin6I	GCGC	2 cut(s)	360, 552
HinP1I	GCGC	2 cut(s)	360, 552
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	178, 542
Hpy188III	TCNNGA	3 cut(s)	163, 379, 388
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	3 cut(s)	127, 130, 360
HpyAV	CCTTC	2 cut(s)	208, 418
HpyCH4IV	ACGT	2 cut(s)	191, 383
HpyCH4V	TGCA	2 cut(s)	101, 265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 118, 127, 253, 262, 410, 452
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	2 cut(s)	191, 383
HspAI	GCGC	2 cut(s)	360, 552
KflI	GGGWCCC	1 cut(s)	349
KspI	CCGCGG	2 cut(s)	79, 339
Kzo9I	GATC	2 cut(s)	154, 577
LmnI	GCTCC	5 cut(s)	31, 37, 138, 443, 500
Lsp1109I	GCAGC	5 cut(s)	142, 249, 416, 541, 561
MaeII	ACGT	2 cut(s)	191, 383
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	156, 579
MboI	GATC	2 cut(s)	154, 577
MboII	GAAGA	1 cut(s)	581
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	3 cut(s)	78, 338, 498
MspR9I	CCNGG	3 cut(s)	321, 409, 478
MvaI	CCWGG	3 cut(s)	321, 409, 478
MvnI	CGCG	3 cut(s)	78, 338, 360
MwoI	GCNNNNNNNGC	7 cut(s)	31, 118, 127, 253, 262, 410, 452
NdeII	GATC	2 cut(s)	154, 577
NlaIV	GGNNCC	3 cut(s)	350, 351, 579
NmuCI	GTSAC	1 cut(s)	146
PkrI	GCNGC	8 cut(s)	120, 132, 264, 312, 337, 406, 551, 556
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	349
PshAI	GACNNNNGTC	3 cut(s)	192, 354, 521
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	319, 407, 476
PspCI	CACGTG	1 cut(s)	192
PspFI	CCCAGC	2 cut(s)	108, 136
PspGI	CCWGG	3 cut(s)	319, 407, 476
PspN4I	GGNNCC	3 cut(s)	350, 351, 579
PspPI	GGNCC	3 cut(s)	333, 349, 427
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	2 cut(s)	299, 490
RsaNI	GTAC	2 cut(s)	298, 489
SacII	CCGCGG	2 cut(s)	79, 339
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	8 cut(s)	119, 131, 263, 311, 336, 405, 550, 555
Sau3AI	GATC	2 cut(s)	154, 577
Sau96I	GGNCC	3 cut(s)	333, 349, 427
ScrFI	CCNGG	3 cut(s)	321, 409, 478
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	135, 194, 201, 264, 277, 285, 386, 448, 462
Sfr303I	CCGCGG	2 cut(s)	79, 339
SgrBI	CCGCGG	2 cut(s)	79, 339
SgrDI	CGTCGACG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	319, 407, 476
StyI	CCWWGG	2 cut(s)	27, 226
TaiI	ACGT	2 cut(s)	194, 386
TaqI	TCGA	2 cut(s)	125, 439
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	121, 313, 338
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	16, 490
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	5 cut(s)	130, 262, 404, 549, 554
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	407, 570
TspRI	CASTG	2 cut(s)	16, 490
VpaK11BI	GGWCC	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	2 cut(s)	327, 502
XmiI	GTMKAC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.