Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16619569 .. 16620141

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAGTCGCATTCCGGCTGTTTACCGAAGGAGCAGGAGCACGCTGTCATTGTCTCCGCCCTGAAATGGGTAATCCGCGGTGGCACCCAACCACCGCTGCCGCCATCGACGCCGAATTCTACCACATCGTCACTACCTCCAACGGGTGGCACCAATCAAGTCGTGATACCATTTTTGGATTGTGTGACGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGGAAAGGGAAAAAGATGAAGACGAGCAACTACAGGGGGGTTCGGCAGAGACCAGGGGGCAAATGGGCTGCGGAGATTTGGGATCCGCGTCGCGCGGTTCGGCTTTGGCTTGGGACTTTTAAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGACAGAGCTAAGCTAAACTTCCCGCCATCCTCGGACACTGGTTCTACCAGTGAAGCAATGACTGATGAGACCAAAGTGCAAACAAGTCCAGTCGGAGAGAGCAGCACTGGGACATATGGGACATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

8.53

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	96 - 146	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 149
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	4 cut(s)	78, 349, 354, 356
AclWI	GGATC	2 cut(s)	338, 351
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 143, 146
AflIII	ACRYGT	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	313, 401
AluBI	AGCT	3 cut(s)	440, 449, 454
AluI	AGCT	3 cut(s)	440, 449, 454
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 304, 503
AlwI	GGATC	2 cut(s)	338, 351
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	4 cut(s)	97, 329, 398, 543
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	2 cut(s)	83, 149
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	84, 316, 410, 555
BccI	CCATC	3 cut(s)	112, 205, 475
BceAI	ACGGC	2 cut(s)	402, 432
BciT130I	CCWGG	2 cut(s)	315, 403
BcoDI	GTCTC	3 cut(s)	58, 304, 503
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	6 cut(s)	98, 101, 330, 399, 420, 544
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	6 cut(s)	99, 102, 331, 400, 421, 545
Bme1390I	CCNGG	2 cut(s)	315, 403
BmeT110I	CYCGRG	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	85, 151, 345
BmrFI	CCNGG	2 cut(s)	315, 403
BmrI	ACTGGG	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	304, 503
BsaJI	CCNNGG	5 cut(s)	76, 223, 314, 402, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 143, 146
Bse1I	ACTGG	4 cut(s)	484, 489, 530, 553
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	315, 403
BseDI	CCNNGG	5 cut(s)	76, 223, 314, 402, 471
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 143, 146
BseMI	GCAATG	1 cut(s)	504
BseNI	ACTGG	4 cut(s)	484, 489, 530, 553
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	4 cut(s)	84, 316, 410, 555
Bsh1236I	CGCG	4 cut(s)	78, 349, 354, 356
BshFI	GGCC	1 cut(s)	422
BshNI	GGYRCC	2 cut(s)	83, 149
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	388, 565
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 143, 146
BsmAI	GTCTC	3 cut(s)	58, 304, 503
BsmFI	GGGAC	2 cut(s)	388, 565
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	2 cut(s)	304, 503
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	343
Bsp1720I	GCTNAGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	422
BspFNI	CGCG	4 cut(s)	78, 349, 354, 356
BspLI	GGNNCC	3 cut(s)	85, 151, 345
BspPI	GGATC	2 cut(s)	338, 351
BspT107I	GGYRCC	2 cut(s)	83, 149
BspTNI	GGTCTC	2 cut(s)	304, 503
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	4 cut(s)	484, 489, 530, 553
BssECI	CCNNGG	5 cut(s)	76, 223, 314, 402, 471
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	315, 403
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	42, 251
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	467
BstFNI	CGCG	4 cut(s)	78, 349, 354, 356
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	3 cut(s)	58, 304, 503
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 250, 395, 404, 446
BstNI	CCWGG	2 cut(s)	315, 403
BstSCI	CCNGG	2 cut(s)	313, 401
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	4 cut(s)	78, 349, 354, 356
BstV1I	GCAGC	4 cut(s)	84, 316, 410, 555
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	477, 496, 546
Cac8I	GCNNGC	2 cut(s)	42, 251
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	421
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	2 cut(s)	118, 338
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EciI	GGCGGA	2 cut(s)	46, 404
Eco130I	CCWWGG	1 cut(s)	223
Eco31I	GGTCTC	2 cut(s)	304, 503
Eco88I	CYCGRG	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	313, 401
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaiI	YATR	7 cut(s)	199, 206, 411, 556, 558, 565, 567
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	388, 565
FauI	CCCGC	2 cut(s)	249, 471
FauNDI	CATATG	2 cut(s)	556, 565
Fnu4HI	GCNGC	6 cut(s)	98, 101, 330, 399, 420, 544
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	98, 101, 330, 399, 420, 544
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	6 cut(s)	98, 101, 330, 399, 420, 544
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	2 cut(s)	118, 338
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	475, 536
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	112, 354
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	4, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 250, 395, 404, 446
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	110
HspAI	GCGC	1 cut(s)	354
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	31, 37, 437
Lsp1109I	GCAGC	4 cut(s)	84, 316, 410, 555
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	129, 184
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	220, 292
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	164, 514
MnlI	CCTC	5 cut(s)	147, 385, 388, 434, 481
MseI	TTAA	2 cut(s)	381, 571
MspA1I	CMGCKG	2 cut(s)	78, 97
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	315, 403
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	315, 403
MvnI	CGCG	4 cut(s)	78, 349, 354, 356
MwoI	GCNNNNNNNGC	5 cut(s)	109, 250, 395, 404, 446
NdeI	CATATG	2 cut(s)	556, 565
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	3 cut(s)	85, 151, 345
NmuCI	GTSAC	2 cut(s)	129, 184
PaeR7I	CTCGAG	1 cut(s)	425
PctI	GAATGC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	99, 102, 331, 400, 421, 545
Psp6I	CCWGG	2 cut(s)	313, 401
PspGI	CCWGG	2 cut(s)	313, 401
PspN4I	GGNNCC	3 cut(s)	85, 151, 345
PspPI	GGNCC	1 cut(s)	421
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	381, 571
SatI	GCNGC	6 cut(s)	98, 101, 330, 399, 420, 544
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	315, 403
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	139, 191, 198, 442, 451, 456
SfcI	CTRYAG	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	425
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	313, 401
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	107, 426
TasI	AATT	1 cut(s)	115
TauI	GCSGC	2 cut(s)	103, 422
Tru1I	TTAA	2 cut(s)	381, 571
Tru9I	TTAA	2 cut(s)	381, 571
TscAI	CASTG	3 cut(s)	484, 496, 553
TseFI	GTSAC	2 cut(s)	129, 184
TseI	GCWGC	4 cut(s)	97, 329, 398, 543
Tsp45I	GTSAC	2 cut(s)	129, 184
TspDTI	ATGAA	2 cut(s)	221, 293
TspRI	CASTG	3 cut(s)	484, 496, 553
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.