RLG00000017410

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
16312059 .. 16316870
4812 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017410

Sequence Viewer

Length: 1104 bp
ATGCAAAAGGCAAGAGATGGGATATCGCGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCATATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAATGGACCGGCTGAGGATCTGTATTATGTATTGTATCTGGTCTCTGAGAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTAAGTTCTCTCTGAGTGCTAGCTTTTTTATATTGGGAATAACCTACAATATTCTTATTGACTGTAAGTTTCTCAAGGCTGCTAATATTCTTGTTGATGACAACTTTGAGGCGAAGGTTGCAGACTTTAGACTTGCCAAATTGGCCTTAGATACAGATACTCATGCCAAGTTGGATCTATGGTACCATCAGGAGCTAGCTAATTGTAGTGTTTATGCGTCTACTGCAAGGCAGACTGGAGCAGAACTACACTCGGACTCGAAAATGAAAAGCAGTGGGACTAAAATGCCCTCGAATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCGTTGGCACAGACAATGCACCCTCCCAGCCACCGCCGCCGTCGACGCAGCTCCCAGCAACAGGTGGCACCGATCAAGTCGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGACGATTGCCTTGGGTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGTAAAAAGGTGAAGACAAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCGGCTGAGATTCGGGACCCGCGTCGAGCGGCTCGGGTTTGGCTAGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCGTGGAATTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACTGGTTCTACCAGTGAAGCAATGACTGATGAAACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTAAGCAAGAAGAAGAGGAAGAGAAGGATGCGTGA

Protein Analysis

368

Amino Acids

40.38

Weight (kDa)

8.35

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 2 - 54 7.6e-09 GDP dissociation inhibitor
AP2 PF00847 269 - 312 6.3e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 2 cut(s) 426, 671
AccBSI CCGCTC 1 cut(s) 875
AccI GTMKAC 2 cut(s) 464, 647
AccII CGCG 4 cut(s) 28, 606, 868, 954
AclWI GGATC 3 cut(s) 182, 217, 426
AcsI RAATTY 2 cut(s) 538, 947
AcvI CACGTG 1 cut(s) 714
AfaI GTAC 2 cut(s) 428, 812
AfeI AGCGCT 1 cut(s) 1066
AfiI CCNNNNNNNGG 5 cut(s) 98, 594, 595, 665, 907
AflIII ACRYGT 2 cut(s) 711, 713
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 2 cut(s) 832, 920
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 8 cut(s) 35, 80, 267, 439, 443, 655, 959, 973
AluI AGCT 8 cut(s) 35, 80, 267, 439, 443, 655, 959, 973
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 3 cut(s) 204, 586, 823
AlwI GGATC 3 cut(s) 182, 217, 426
Ama87I CYCGRG 1 cut(s) 879
Aor51HI AGCGCT 1 cut(s) 1066
AoxI GGCC 2 cut(s) 387, 939
ApeKI GCWGC 6 cut(s) 137, 323, 652, 917, 1062, 1067
ApoI RAATTY 2 cut(s) 538, 947
Asp718I GGTACC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 1067
AspS9I GGNCC 2 cut(s) 163, 862
AsuHPI GGTGA 1 cut(s) 808
AsuNHI GCTAGC 2 cut(s) 263, 439
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 2 cut(s) 163, 862
BanI GGYRCC 2 cut(s) 426, 671
BbrPI CACGTG 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 146, 806
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 6 cut(s) 124, 310, 664, 929, 1054, 1074
BccI CCATC 4 cut(s) 11, 438, 724, 994
BceAI ACGGC 3 cut(s) 117, 628, 926
BciT130I CCWGG 2 cut(s) 834, 922
BcoDI GTCTC 3 cut(s) 204, 586, 823
BfaI CTAG 3 cut(s) 264, 440, 890
BfoI RGCGCY 1 cut(s) 1068
BfuAI ACCTGC 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 386
BlpI GCTNAGC 1 cut(s) 1071
Bme1390I CCNGG 2 cut(s) 834, 922
Bme18I GGWCC 2 cut(s) 163, 862
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 163, 862
BmiI GGNNCC 4 cut(s) 428, 673, 863, 864
BmrFI CCNGG 2 cut(s) 834, 922
BmsI GCATC 1 cut(s) 1087
BmtI GCTAGC 2 cut(s) 267, 443
BoxI GACNNNNGTC 2 cut(s) 714, 867
BpiI GAAGAC 2 cut(s) 146, 806
BpmI CTGGAG 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 1071
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 714
BsaI GGTCTC 2 cut(s) 204, 823
BsaJI CCNNGG 5 cut(s) 555, 748, 921, 942, 990
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 594, 595, 665, 907
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 4 cut(s) 484, 1003, 1008, 1049
Bse3DI GCAATG 1 cut(s) 1023
BseBI CCWGG 2 cut(s) 834, 922
BseDI CCNNGG 5 cut(s) 555, 748, 921, 942, 990
BseGI GGATG 2 cut(s) 986, 1102
BseLI CCNNNNNNNGG 5 cut(s) 98, 594, 595, 665, 907
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 4 cut(s) 161, 194, 248, 843
BseNI ACTGG 4 cut(s) 484, 1003, 1008, 1049
BseRI GAGGAG 2 cut(s) 923, 926
BseXI GCAGC 6 cut(s) 124, 310, 664, 929, 1054, 1074
BseYI CCCAGC 2 cut(s) 630, 658
Bsh1236I CGCG 4 cut(s) 28, 606, 868, 954
BshFI GGCC 2 cut(s) 389, 941
BshNI GGYRCC 2 cut(s) 426, 671
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 2 cut(s) 166, 543
BslFI GGGAC 3 cut(s) 535, 875, 907
BslI CCNNNNNNNGG 5 cut(s) 98, 594, 595, 665, 907
BsmAI GTCTC 3 cut(s) 204, 586, 823
BsmFI GGGAC 3 cut(s) 535, 875, 907
BsnI GGCC 2 cut(s) 389, 941
Bso31I GGTCTC 2 cut(s) 204, 823
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 174, 209, 418, 676
Bsp1720I GCTNAGC 1 cut(s) 1071
BspANI GGCC 2 cut(s) 389, 941
BspCNI CTCAG 4 cut(s) 162, 195, 249, 844
BspFNI CGCG 4 cut(s) 28, 606, 868, 954
BspLI GGNNCC 4 cut(s) 428, 673, 863, 864
BspMI ACCTGC 1 cut(s) 48
BspOI GCTAGC 2 cut(s) 267, 443
BspPI GGATC 3 cut(s) 182, 217, 426
BspT107I GGYRCC 2 cut(s) 426, 671
BspTNI GGTCTC 2 cut(s) 204, 823
BsrBI CCGCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 4 cut(s) 484, 1003, 1008, 1049
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 5 cut(s) 555, 748, 921, 942, 990
BssMI GATC 4 cut(s) 174, 209, 418, 676
BssT1I CCWWGG 2 cut(s) 555, 748
Bst2UI CCWGG 2 cut(s) 834, 922
Bst4CI ACNGT 2 cut(s) 245, 308
Bst6I CTCTTC 2 cut(s) 1077, 1083
BstBAI YACGTR 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 265, 441, 570, 776
BstDEI CTNAG 6 cut(s) 170, 203, 257, 391, 852, 1071
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 2 cut(s) 986, 1102
BstFNI CGCG 4 cut(s) 28, 606, 868, 954
BstH2I RGCGCY 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 1067
BstKTI GATC 4 cut(s) 177, 212, 421, 679
BstMAI GTCTC 3 cut(s) 204, 586, 823
BstMBI GATC 4 cut(s) 174, 209, 418, 676
BstMWI GCNNNNNNNGC 9 cut(s) 77, 362, 386, 467, 640, 649, 775, 923, 965
BstNI CCWGG 2 cut(s) 834, 922
BstPAI GACNNNNGTC 2 cut(s) 714, 867
BstSCI CCNGG 2 cut(s) 832, 920
BstUI CGCG 4 cut(s) 28, 606, 868, 954
BstV1I GCAGC 6 cut(s) 124, 310, 664, 929, 1054, 1074
BstV2I GAAGAC 2 cut(s) 146, 806
BstX2I RGATCY 3 cut(s) 174, 209, 418
BstYI RGATCY 3 cut(s) 174, 209, 418
BsuRI GGCC 2 cut(s) 389, 941
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 2 cut(s) 986, 1102
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 523, 996, 1015
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 4 cut(s) 265, 441, 570, 776
CfoI GCGC 1 cut(s) 1067
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 163, 862
CseI GACGC 3 cut(s) 450, 658, 857
Csp6I GTAC 2 cut(s) 427, 811
CviAII CATG 3 cut(s) 104, 236, 407
CviQI GTAC 2 cut(s) 427, 811
DdeI CTNAG 6 cut(s) 170, 203, 257, 391, 852, 1071
DpnI GATC 4 cut(s) 176, 211, 420, 678
DpnII GATC 4 cut(s) 174, 209, 418, 676
Eam1104I CTCTTC 2 cut(s) 1077, 1083
EarI CTCTTC 2 cut(s) 1077, 1083
Eco130I CCWWGG 2 cut(s) 555, 748
Eco31I GGTCTC 2 cut(s) 204, 823
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 163, 862
Eco47III AGCGCT 1 cut(s) 1066
Eco72I CACGTG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 832, 920
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 555, 748
ErhI CCWWGG 2 cut(s) 555, 748
FaeI CATG 3 cut(s) 107, 239, 410
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 962, 994
FaqI GGGAC 3 cut(s) 535, 875, 907
FatI CATG 3 cut(s) 103, 235, 406
FauI CCCGC 3 cut(s) 774, 873, 990
FauNDI CATATG 1 cut(s) 67
FblI GTMKAC 2 cut(s) 464, 647
FokI GGATG 1 cut(s) 973
FspBI CTAG 3 cut(s) 264, 440, 890
GlaI GCGC 1 cut(s) 1066
GsaI CCCAGC 2 cut(s) 634, 662
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 1068
HaeIII GGCC 2 cut(s) 389, 941
HapII CCGG 2 cut(s) 166, 543
HgaI GACGC 3 cut(s) 450, 658, 857
HhaI GCGC 1 cut(s) 1067
Hin1II CATG 3 cut(s) 107, 239, 410
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 2 cut(s) 500, 856
HpaII CCGG 2 cut(s) 166, 543
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 3 cut(s) 465, 551, 648
Hpy188I TCNGA 6 cut(s) 204, 258, 499, 700, 994, 1055
Hpy188III TCNNGA 4 cut(s) 434, 685, 860, 901
Hpy8I GTNNAC 3 cut(s) 465, 551, 648
Hpy99I CGWCG 3 cut(s) 649, 652, 873
HpyAV CCTTC 4 cut(s) 352, 730, 931, 1087
HpyCH4III ACNGT 2 cut(s) 245, 308
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 5 cut(s) 4, 215, 365, 470, 623
HpyF10VI GCNNNNNNNGC 9 cut(s) 77, 362, 386, 467, 640, 649, 775, 923, 965
HpyF3I CTNAG 6 cut(s) 170, 203, 257, 391, 852, 1071
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 3 cut(s) 107, 239, 410
HspAI GCGC 1 cut(s) 1065
KflI GGGWCCC 1 cut(s) 862
KpnI GGTACC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 174, 209, 418, 676
LmnI GCTCC 7 cut(s) 77, 436, 482, 559, 565, 660, 956
Lsp1109I GCAGC 6 cut(s) 124, 310, 664, 929, 1054, 1074
LweI GCATC 1 cut(s) 1087
MaeI CTAG 3 cut(s) 264, 440, 890
MaeII ACGT 1 cut(s) 713
MalI GATC 4 cut(s) 176, 211, 420, 678
MbiI CCGCTC 1 cut(s) 875
MboI GATC 4 cut(s) 174, 209, 418, 676
MboII GAAGA 5 cut(s) 146, 811, 1091, 1094, 1100
MflI RGATCY 3 cut(s) 174, 209, 418
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 4 cut(s) 383, 445, 538, 947
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 2 cut(s) 396, 1033
MseI TTAA 1 cut(s) 144
MspI CCGG 2 cut(s) 166, 543
MspR9I CCNGG 2 cut(s) 834, 922
MvaI CCWGG 2 cut(s) 834, 922
MvnI CGCG 4 cut(s) 28, 606, 868, 954
MwoI GCNNNNNNNGC 9 cut(s) 77, 362, 386, 467, 640, 649, 775, 923, 965
NdeI CATATG 1 cut(s) 67
NdeII GATC 4 cut(s) 174, 209, 418, 676
NheI GCTAGC 2 cut(s) 263, 439
NlaIII CATG 3 cut(s) 107, 239, 410
NlaIV GGNNCC 4 cut(s) 428, 673, 863, 864
PcsI WCGNNNNNNNCGW 1 cut(s) 865
PfeI GAWTC 1 cut(s) 856
PleI GAGTC 1 cut(s) 494
PmaCI CACGTG 1 cut(s) 714
PmlI CACGTG 1 cut(s) 714
PpsI GAGTC 1 cut(s) 494
Ppu21I YACGTR 1 cut(s) 714
PpuMI RGGWCCY 1 cut(s) 862
PshAI GACNNNNGTC 2 cut(s) 714, 867
Psp5II RGGWCCY 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 832, 920
PspCI CACGTG 1 cut(s) 714
PspFI CCCAGC 2 cut(s) 630, 658
PspGI CCWGG 2 cut(s) 832, 920
PspN4I GGNNCC 4 cut(s) 428, 673, 863, 864
PspPI GGNCC 2 cut(s) 163, 862
PspPPI RGGWCCY 1 cut(s) 862
PsuI RGATCY 3 cut(s) 174, 209, 418
RsaI GTAC 2 cut(s) 428, 812
RsaNI GTAC 2 cut(s) 427, 811
SalI GTCGAC 1 cut(s) 646
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 4 cut(s) 174, 209, 418, 676
Sau96I GGNCC 2 cut(s) 163, 862
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 834, 922
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 1 cut(s) 1087
SgrDI CGTCGACG 1 cut(s) 646
SinI GGWCC 2 cut(s) 163, 862
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 4 cut(s) 383, 445, 538, 947
SspI AATATT 2 cut(s) 295, 331
SspMI CTAG 3 cut(s) 264, 440, 890
StyD4I CCNGG 2 cut(s) 832, 920
StyI CCWWGG 2 cut(s) 555, 748
TaaI ACNGT 2 cut(s) 245, 308
TaiI ACGT 1 cut(s) 716
TaqI TCGA 4 cut(s) 503, 536, 647, 871
TasI AATT 4 cut(s) 383, 445, 538, 947
TatI WGTACW 1 cut(s) 810
TauI GCSGC 5 cut(s) 132, 643, 826, 851, 878
TfiI GAWTC 1 cut(s) 856
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 3 cut(s) 523, 1003, 1015
TseI GCWGC 6 cut(s) 137, 323, 652, 917, 1062, 1067
TspDTI ATGAA 2 cut(s) 524, 1041
TspGWI ACGGA 1 cut(s) 920
TspRI CASTG 3 cut(s) 523, 1003, 1015
VpaK11BI GGWCC 2 cut(s) 163, 862
XapI RAATTY 2 cut(s) 538, 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XmiI GTMKAC 2 cut(s) 464, 647
XspI CTAG 3 cut(s) 264, 440, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.