Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

17158814 .. 17159707

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG179000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGGATTTCTTCTTCCCAGCCACGCTCGGACTCGAAAATGAAAAGCAATGGGACTAAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGTGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAAACAATGCACCCTCCCAGCCACCGCCGCCGCCGACGAAGCAGCTCCCAGAAACGGGTGGCACCGATCAAATTGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAATATGGAGATGGATCATTGCCTTGGCTGTGGTTTGTTCCCTCCAAGGGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCCCGTCGCGCGGTTCGCGTTTGGCTCGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCGTGGAATTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACTGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCACTGCTGAGGAAGAAGAAGAGGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

214

Amino Acids

23.35

Weight (kDa)

6.0

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	116 - 159	1.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	5 cut(s)	138, 414, 416, 423, 495
AclWI	GGATC	2 cut(s)	288, 632
AcsI	RAATTY	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	353, 544
AfiI	CCNNNNNNNGG	7 cut(s)	126, 127, 205, 206, 313, 415, 448
AflIII	ACRYGT	2 cut(s)	252, 254
AjnI	CCWGG	2 cut(s)	373, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	196, 500, 514
AluI	AGCT	3 cut(s)	196, 500, 514
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	118, 364, 563
AlwI	GGATC	2 cut(s)	288, 632
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	193, 458, 603
ApoI	RAATTY	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	212
BbrPI	CACGTG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	205, 470, 615
BccI	CCATC	3 cut(s)	271, 535, 628
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	375, 463
BcoDI	GTCTC	3 cut(s)	118, 364, 563
BisI	GCNGC	7 cut(s)	179, 182, 194, 365, 390, 459, 604
BlsI	GCNGC	7 cut(s)	180, 183, 195, 366, 391, 460, 605
Bme1390I	CCNGG	2 cut(s)	375, 463
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	4 cut(s)	214, 404, 405, 639
BmrFI	CCNGG	2 cut(s)	375, 463
BoxI	GACNNNNGTC	3 cut(s)	255, 408, 575
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	255
BsaI	GGTCTC	2 cut(s)	364, 563
BsaJI	CCNNGG	7 cut(s)	87, 136, 289, 311, 462, 483, 531
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 127, 205, 206, 313, 415, 448
Bse1I	ACTGG	3 cut(s)	544, 549, 590
Bse3DI	GCAATG	3 cut(s)	55, 283, 564
BseBI	CCWGG	2 cut(s)	375, 463
BseDI	CCNNGG	7 cut(s)	87, 136, 289, 311, 462, 483, 531
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	7 cut(s)	126, 127, 205, 206, 313, 415, 448
BseMI	GCAATG	3 cut(s)	55, 283, 564
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	3 cut(s)	544, 549, 590
BseRI	GAGGAG	2 cut(s)	464, 467
BseXI	GCAGC	3 cut(s)	205, 470, 615
BseYI	CCCAGC	2 cut(s)	18, 168
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	5 cut(s)	138, 414, 416, 423, 495
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	3 cut(s)	67, 416, 448
BslI	CCNNNNNNNGG	7 cut(s)	126, 127, 205, 206, 313, 415, 448
BsmAI	GTCTC	3 cut(s)	118, 364, 563
BsmFI	GGGAC	3 cut(s)	67, 416, 448
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	2 cut(s)	364, 563
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	217, 280, 637
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	5 cut(s)	138, 414, 416, 423, 495
BspLI	GGNNCC	4 cut(s)	214, 404, 405, 639
BspPI	GGATC	2 cut(s)	288, 632
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	364, 563
BsrDI	GCAATG	3 cut(s)	55, 283, 564
BsrI	ACTGG	3 cut(s)	544, 549, 590
BssECI	CCNNGG	7 cut(s)	87, 136, 289, 311, 462, 483, 531
BssMI	GATC	3 cut(s)	217, 280, 637
BssT1I	CCWWGG	3 cut(s)	87, 289, 311
Bst2UI	CCWGG	2 cut(s)	375, 463
Bst6I	CTCTTC	2 cut(s)	618, 624
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	612
BstDSI	CCRYGG	2 cut(s)	136, 483
BstF5I	GGATG	1 cut(s)	527
BstFNI	CGCG	5 cut(s)	138, 414, 416, 423, 495
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	3 cut(s)	220, 283, 640
BstMAI	GTCTC	3 cut(s)	118, 364, 563
BstMBI	GATC	3 cut(s)	217, 280, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 190, 420, 464, 506
BstNI	CCWGG	2 cut(s)	375, 463
BstPAI	GACNNNNGTC	3 cut(s)	255, 408, 575
BstSCI	CCNGG	2 cut(s)	373, 461
BstUI	CGCG	5 cut(s)	138, 414, 416, 423, 495
BstV1I	GCAGC	3 cut(s)	205, 470, 615
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	2 cut(s)	136, 483
BtsCI	GGATG	1 cut(s)	527
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	537, 556, 606
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	403
Cfr42I	CCGCGG	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	352, 543
CviQI	GTAC	2 cut(s)	352, 543
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	3 cut(s)	219, 282, 639
DpnII	GATC	3 cut(s)	217, 280, 637
Eam1104I	CTCTTC	2 cut(s)	618, 624
EarI	CTCTTC	2 cut(s)	618, 624
EciI	GGCGGA	2 cut(s)	106, 407
Eco130I	CCWWGG	3 cut(s)	87, 289, 311
Eco31I	GGTCTC	2 cut(s)	364, 563
Eco47I	GGWCC	1 cut(s)	403
Eco72I	CACGTG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	373, 461
EcoT14I	CCWWGG	3 cut(s)	87, 289, 311
ErhI	CCWWGG	3 cut(s)	87, 289, 311
FaiI	YATR	3 cut(s)	265, 272, 471
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	3 cut(s)	67, 416, 448
FauI	CCCGC	1 cut(s)	531
Fnu4HI	GCNGC	7 cut(s)	179, 182, 194, 365, 390, 459, 604
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	7 cut(s)	179, 182, 194, 365, 390, 459, 604
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	7 cut(s)	179, 182, 194, 365, 390, 459, 604
GsaI	CCCAGC	2 cut(s)	22, 172
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	2 cut(s)	32, 397
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	4 cut(s)	31, 241, 535, 596
Hpy188III	TCNNGA	3 cut(s)	401, 433, 442
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	2 cut(s)	190, 414
HpyAV	CCTTC	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	94, 161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 190, 420, 464, 506
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	1 cut(s)	254
HspAI	GCGC	1 cut(s)	414
KflI	GGGWCCC	1 cut(s)	403
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	217, 280, 637
LmnI	GCTCC	5 cut(s)	97, 201, 316, 497, 554
Lsp1109I	GCAGC	3 cut(s)	205, 470, 615
MaeII	ACGT	1 cut(s)	254
MalI	GATC	3 cut(s)	219, 282, 639
MboI	GATC	3 cut(s)	217, 280, 637
MboII	GAAGA	7 cut(s)	3, 6, 352, 629, 632, 635, 641
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	222, 488
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	375, 463
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	375, 463
MvnI	CGCG	5 cut(s)	138, 414, 416, 423, 495
MwoI	GCNNNNNNNGC	5 cut(s)	178, 190, 420, 464, 506
NdeII	GATC	3 cut(s)	217, 280, 637
NlaIV	GGNNCC	4 cut(s)	214, 404, 405, 639
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	7 cut(s)	180, 183, 195, 366, 391, 460, 605
PleI	GAGTC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	403
PshAI	GACNNNNGTC	3 cut(s)	255, 408, 575
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	373, 461
PspCI	CACGTG	1 cut(s)	255
PspFI	CCCAGC	2 cut(s)	18, 168
PspGI	CCWGG	2 cut(s)	373, 461
PspN4I	GGNNCC	4 cut(s)	214, 404, 405, 639
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	2 cut(s)	353, 544
RsaNI	GTAC	2 cut(s)	352, 543
SacII	CCGCGG	1 cut(s)	139
SatI	GCNGC	7 cut(s)	179, 182, 194, 365, 390, 459, 604
Sau3AI	GATC	3 cut(s)	217, 280, 637
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	375, 463
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	93, 198, 257, 264, 331, 339, 502, 516
Sfr303I	CCGCGG	1 cut(s)	139
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	2 cut(s)	222, 488
StyD4I	CCNGG	2 cut(s)	373, 461
StyI	CCWWGG	3 cut(s)	87, 289, 311
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	222, 488
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	4 cut(s)	181, 184, 367, 392
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	3 cut(s)	544, 556, 613
TseI	GCWGC	3 cut(s)	193, 458, 603
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	2 cut(s)	461, 630
TspRI	CASTG	3 cut(s)	544, 556, 613
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.