Prupe.7G134100_v2.0.a1
ERF Family

Ethylene-responsive transcription factor ERF109-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000568
Physical Location & Seq
Forward (+)
15214344 .. 15215144
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G134100.1

Sequence Viewer

Length: 801 bp
ATGCCCTTGCACGCCAATCGCATACAGCAGAAGCAGGAGCACTGTATCATGGTCTCCGCCCTCAAGCATGTAATCTCCGGCGGCATCAATGCCGGTGGTAGTGGACCCACTTCGCAGCAGCAGCAGCTAATGGGAGCCGTCCATTCTGCCACGTCGTCAGTCCCCTCGACGAGGGACGGGACCCAATCAGCAACGGACCAAGTACACATGCTGTCGTTTTCGGCAGAGGGCGATACGTGTCGGGTGTGCGGGATCGAGGGGTGTCTTGGGTGCAACTATTTCCCGTCAACAACATTGCCAGACAGAAACAAGCAACTGAATTTGGGGAGCGGGGCGAATGCGGGGACGAGGAAGGGGAAGAACAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTGGGCAGCGGAGATTCGGGACCCGCGGCGGGCGGCGAGGGTTTGGCTGGGGACGTTCGAGACGGCGGAGGAAGCAGCCAGGGCTTACGACAAAGCTGCCATTGCGTTCCGTGGGGACAAAGCCAAGCTCAATTTCTCATTAACCTCGTCCGATCAGCACAGCAATATCACTAATAACAACATCACTTCTAGTAGCAGAAGAACTAGGACTAGCTCACAATTAAATAGGAGCATGGAAGAGGCTGATCAGGACAAAGTCAAACCAATTACTGTGAAACAATCAGAGAAGGTGGAAATATTTGAGAGCAGTGCCTCGCAGGAAGAGAATGACCAGTTTCTCTGGGACATGCTTCAAGATGGAGATGATGACGATGAGTTGAAAGCATGGATGTCAGCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

267

Amino Acids

29.26

Weight (kDa)

7.67

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AccII CGCG 1 cut(s) 424
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 2 cut(s) 204, 368
AfiI CCNNNNNNNGG 2 cut(s) 171, 427
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 2 cut(s) 752, 778
AjiI CACGTC 1 cut(s) 153
AjnI CCWGG 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 4 cut(s) 127, 494, 526, 612
AluI AGCT 4 cut(s) 127, 494, 526, 612
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 2 cut(s) 58, 452
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 7 cut(s) 115, 118, 121, 124, 404, 473, 494
ApoI RAATTY 1 cut(s) 319
AspS9I GGNCC 4 cut(s) 104, 180, 196, 418
AvaII GGWCC 4 cut(s) 104, 180, 196, 418
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 7 cut(s) 127, 130, 133, 136, 416, 481, 485
BccI CCATC 1 cut(s) 749
BceAI ACGGC 3 cut(s) 122, 373, 477
BcgI CGANNNNNNTGC 3 cut(s) 33, 476, 510
BciT130I CCWGG 1 cut(s) 478
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 58, 452
BfaI CTAG 3 cut(s) 588, 603, 609
Bme1390I CCNGG 1 cut(s) 478
Bme18I GGWCC 4 cut(s) 104, 180, 196, 418
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 4 cut(s) 104, 180, 196, 418
BmiI GGNNCC 6 cut(s) 106, 136, 181, 182, 419, 420
BmrFI CCNGG 1 cut(s) 478
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 389, 422, 477, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 427
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 730
Bse3DI GCAATG 2 cut(s) 293, 498
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 4 cut(s) 389, 422, 477, 508
BseGI GGATG 1 cut(s) 792
BseLI CCNNNNNNNGG 2 cut(s) 171, 427
BseMI GCAATG 2 cut(s) 293, 498
BseNI ACTGG 1 cut(s) 730
BseXI GCAGC 7 cut(s) 127, 130, 133, 136, 416, 481, 485
BseYI CCCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 78, 93
BslFI GGGAC 8 cut(s) 146, 188, 193, 358, 431, 463, 527, 755
BslI CCNNNNNNNGG 2 cut(s) 171, 427
BsmAI GTCTC 2 cut(s) 58, 452
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 8 cut(s) 146, 188, 193, 358, 431, 463, 527, 755
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 388
Bso31I GGTCTC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 252, 550, 643
BspANI GGCC 1 cut(s) 388
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 6 cut(s) 106, 136, 181, 182, 419, 420
BspPI GGATC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 330
BsrDI GCAATG 2 cut(s) 293, 498
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 730
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 4 cut(s) 389, 422, 477, 508
BssMI GATC 3 cut(s) 252, 550, 643
Bst2UI CCWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 44, 670
Bst6I CTCTTC 2 cut(s) 630, 714
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 12, 429
BstDSI CCRYGG 3 cut(s) 389, 422, 508
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 792
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 3 cut(s) 255, 553, 646
BstMAI GTCTC 2 cut(s) 58, 452
BstMBI GATC 3 cut(s) 252, 550, 643
BstMWI GCNNNNNNNGC 5 cut(s) 121, 124, 470, 479, 500
BstNI CCWGG 1 cut(s) 478
BstNSI RCATGY 3 cut(s) 71, 211, 748
BstSCI CCNGG 1 cut(s) 476
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 7 cut(s) 127, 130, 133, 136, 416, 481, 485
BsuRI GGCC 1 cut(s) 388
BtgI CCRYGG 3 cut(s) 389, 422, 508
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 792
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 40, 712
Cac8I GCNNGC 2 cut(s) 12, 429
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 104, 180, 196, 418
Cfr42I CCGCGG 1 cut(s) 425
Csp6I GTAC 2 cut(s) 203, 367
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 6 cut(s) 49, 68, 208, 631, 745, 783
CviQI GTAC 2 cut(s) 203, 367
DpnI GATC 3 cut(s) 254, 552, 645
DpnII GATC 3 cut(s) 252, 550, 643
Eam1104I CTCTTC 2 cut(s) 630, 714
EarI CTCTTC 2 cut(s) 630, 714
EciI GGCGGA 2 cut(s) 46, 479
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 4 cut(s) 104, 180, 196, 418
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoO109I RGGNCCY 2 cut(s) 180, 418
EcoRII CCWGG 1 cut(s) 476
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 6 cut(s) 52, 71, 211, 634, 748, 786
FaiI YATR 7 cut(s) 23, 50, 69, 209, 632, 746, 784
FaqI GGGAC 8 cut(s) 146, 188, 193, 358, 431, 463, 527, 755
FatI CATG 6 cut(s) 48, 67, 207, 630, 744, 782
FauI CCCGC 5 cut(s) 242, 323, 334, 420, 429
FbaI TGATCA 1 cut(s) 643
FspBI CTAG 3 cut(s) 588, 603, 609
GsaI CCCAGC 1 cut(s) 449
HaeIII GGCC 1 cut(s) 388
HapII CCGG 2 cut(s) 78, 93
Hin1II CATG 6 cut(s) 52, 71, 211, 634, 748, 786
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 1 cut(s) 412
HpaII CCGG 2 cut(s) 78, 93
Hpy166II GTNNAC 3 cut(s) 104, 205, 288
Hpy188I TCNGA 2 cut(s) 550, 682
Hpy188III TCNNGA 4 cut(s) 416, 457, 647, 752
Hpy8I GTNNAC 3 cut(s) 104, 205, 288
Hpy99I CGWCG 2 cut(s) 157, 172
HpyAV CCTTC 2 cut(s) 346, 679
HpyCH4III ACNGT 2 cut(s) 44, 670
HpyCH4IV ACGT 3 cut(s) 152, 236, 452
HpyCH4V TGCA 2 cut(s) 10, 273
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 124, 470, 479, 500
HpySE526I ACGT 3 cut(s) 152, 236, 452
Hsp92II CATG 6 cut(s) 52, 71, 211, 634, 748, 786
KflI GGGWCCC 2 cut(s) 180, 418
Ksp22I TGATCA 1 cut(s) 643
KspI CCGCGG 1 cut(s) 425
Kzo9I GATC 3 cut(s) 252, 550, 643
LmnI GCTCC 4 cut(s) 37, 134, 327, 627
Lsp1109I GCAGC 7 cut(s) 127, 130, 133, 136, 416, 481, 485
LweI GCATC 1 cut(s) 93
MaeI CTAG 3 cut(s) 588, 603, 609
MaeII ACGT 3 cut(s) 152, 236, 452
MalI GATC 3 cut(s) 254, 552, 645
MbiI CCGCTC 1 cut(s) 330
MboI GATC 3 cut(s) 252, 550, 643
MboII GAAGA 4 cut(s) 370, 609, 647, 731
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 4 cut(s) 319, 529, 617, 663
MseI TTAA 2 cut(s) 539, 620
MspA1I CMGCKG 2 cut(s) 407, 424
MspI CCGG 2 cut(s) 78, 93
MspR9I CCNGG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 5 cut(s) 121, 124, 470, 479, 500
NdeII GATC 3 cut(s) 252, 550, 643
NlaIII CATG 6 cut(s) 52, 71, 211, 634, 748, 786
NlaIV GGNNCC 6 cut(s) 106, 136, 181, 182, 419, 420
NspI RCATGY 3 cut(s) 71, 211, 748
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 412
PflFI GACNNNGTC 1 cut(s) 653
Ppu21I YACGTR 1 cut(s) 237
PpuMI RGGWCCY 2 cut(s) 180, 418
Psp5II RGGWCCY 2 cut(s) 180, 418
Psp6I CCWGG 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 6 cut(s) 106, 136, 181, 182, 419, 420
PspPI GGNCC 4 cut(s) 104, 180, 196, 418
PspPPI RGGWCCY 2 cut(s) 180, 418
PsyI GACNNNGTC 1 cut(s) 653
RsaI GTAC 2 cut(s) 204, 368
RsaNI GTAC 2 cut(s) 203, 367
SacII CCGCGG 1 cut(s) 425
SaqAI TTAA 2 cut(s) 539, 620
Sau3AI GATC 3 cut(s) 252, 550, 643
Sau96I GGNCC 4 cut(s) 104, 180, 196, 418
ScrFI CCNGG 1 cut(s) 478
SduI GDGCHC 1 cut(s) 42
SetI ASST 9 cut(s) 129, 155, 239, 455, 496, 528, 545, 614, 690
SfaNI GCATC 1 cut(s) 93
Sfr303I CCGCGG 1 cut(s) 425
SgrBI CCGCGG 1 cut(s) 425
SinI GGWCC 4 cut(s) 104, 180, 196, 418
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 319, 529, 617, 663
SspI AATATT 1 cut(s) 696
SspMI CTAG 3 cut(s) 588, 603, 609
StyD4I CCNGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 44, 670
TaiI ACGT 3 cut(s) 155, 239, 455
TaqI TCGA 3 cut(s) 167, 255, 456
TasI AATT 4 cut(s) 319, 529, 617, 663
TatI WGTACW 2 cut(s) 202, 366
TauI GCSGC 3 cut(s) 84, 427, 434
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 539, 620
Tru9I TTAA 2 cut(s) 539, 620
TscAI CASTG 2 cut(s) 47, 712
TseI GCWGC 7 cut(s) 115, 118, 121, 124, 404, 473, 494
TspGWI ACGGA 2 cut(s) 209, 497
TspRI CASTG 2 cut(s) 47, 712
Tth111I GACNNNGTC 1 cut(s) 653
VpaK11BI GGWCC 4 cut(s) 104, 180, 196, 418
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 319
XceI RCATGY 3 cut(s) 71, 211, 748
XspI CTAG 3 cut(s) 588, 603, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.