Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

42374459 .. 42375154

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCCTCACATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACAGGTGGTCCGCGGTGGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGGTGGCACCGATCAAGTCGTGATACCTTTTTCGGATTGTGACACGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCGGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACAAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGGGGGAAATGGGCTGCGGAGATTCGTGACCCACGTCGCGCGGTTCGGGTTTGGCTCGGGACGTTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCGCTAAGCAGTGAAGCTGGTACTACTACTACTGGTGCAGCATTGACTAGGCAAAGCATGGAGACTGGTGAGGTCAATAATCAAGTCACCGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGTAGTGATGTTAAGGACGAAGACATCGATCGCTTCGTCTGGGAAATGCTTAAAAATGACGACGGCGATGAAGATTTAAGCACACGGGTCAACTCAAATTTGTTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

231

Amino Acids

25.21

Weight (kDa)

5.36

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	95 - 145	1.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 146
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	4 cut(s)	78, 351, 353, 548
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	682
AcvI	CACGTG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	290, 478
AfiI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
AflIII	ACRYGT	2 cut(s)	183, 185
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	310, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	3 cut(s)	109, 448, 473
AluI	AGCT	3 cut(s)	109, 448, 473
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 301, 512
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	106, 326, 395, 494
ApoI	RAATTY	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	535, 536
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	2 cut(s)	83, 146
BbrPI	CACGTG	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	284, 612
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	118, 313, 407, 506
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	3 cut(s)	399, 429, 664
BciT130I	CCWGG	2 cut(s)	312, 400
BcoDI	GTCTC	3 cut(s)	58, 301, 512
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	8 cut(s)	102, 105, 108, 303, 328, 397, 418, 496
Bme1390I	CCNGG	2 cut(s)	312, 400
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	85, 148
BmrFI	CCNGG	2 cut(s)	312, 400
BoxI	GACNNNNGTC	2 cut(s)	186, 345
BpiI	GAAGAC	2 cut(s)	284, 612
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
Bpu1102I	GCTNAGC	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 140, 143
Bse1I	ACTGG	2 cut(s)	493, 526
BseBI	CCWGG	2 cut(s)	312, 400
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
BseLI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
BseNI	ACTGG	2 cut(s)	493, 526
BseRI	GAGGAG	2 cut(s)	404, 447
BseXI	GCAGC	4 cut(s)	118, 313, 407, 506
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	4 cut(s)	78, 351, 353, 548
Bsh1285I	CGRYCG	2 cut(s)	423, 616
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	2 cut(s)	83, 146
BshVI	ATCGAT	1 cut(s)	612
BsiEI	CGRYCG	2 cut(s)	423, 616
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	15, 238
BslFI	GGGAC	2 cut(s)	385, 594
BslI	CCNNNNNNNGG	3 cut(s)	67, 140, 143
BsmAI	GTCTC	3 cut(s)	58, 301, 512
BsmFI	GGGAC	2 cut(s)	385, 594
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	151, 420, 613
Bsp1720I	GCTNAGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	612
BspFNI	CGCG	4 cut(s)	78, 351, 353, 548
BspLI	GGNNCC	2 cut(s)	85, 148
BspT107I	GGYRCC	2 cut(s)	83, 146
BspTNI	GGTCTC	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	493, 526
BssECI	CCNNGG	6 cut(s)	27, 76, 220, 311, 399, 430
BssMI	GATC	3 cut(s)	151, 420, 613
BssT1I	CCWWGG	2 cut(s)	27, 220
Bst2UI	CCWGG	2 cut(s)	312, 400
Bst6I	CTCTTC	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	42, 248
BstDEI	CTNAG	1 cut(s)	461
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstFNI	CGCG	4 cut(s)	78, 351, 353, 548
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	154, 423, 616
BstMAI	GTCTC	3 cut(s)	58, 301, 512
BstMBI	GATC	3 cut(s)	151, 420, 613
BstMCI	CGRYCG	2 cut(s)	423, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
BstNI	CCWGG	2 cut(s)	312, 400
BstPAI	GACNNNNGTC	2 cut(s)	186, 345
BstSCI	CCNGG	2 cut(s)	310, 398
BstUI	CGCG	4 cut(s)	78, 351, 353, 548
BstV1I	GCAGC	4 cut(s)	118, 313, 407, 506
BstV2I	GAAGAC	2 cut(s)	284, 612
Bsu15I	ATCGAT	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	666
BtrI	CACGTC	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	42, 248
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	289, 477
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	2 cut(s)	289, 477
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	3 cut(s)	153, 422, 615
DpnII	GATC	3 cut(s)	151, 420, 613
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	2 cut(s)	46, 401
Eco130I	CCWWGG	2 cut(s)	27, 220
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	310, 398
EcoT14I	CCWWGG	2 cut(s)	27, 220
ErhI	CCWWGG	2 cut(s)	27, 220
FaeI	CATG	1 cut(s)	517
FaiI	YATR	5 cut(s)	117, 196, 203, 408, 515
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	385, 594
FatI	CATG	1 cut(s)	513
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
Fsp4HI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	15, 238
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	334, 568
HpaII	CCGG	2 cut(s)	15, 238
HphI	GGTGA	2 cut(s)	535, 536
Hpy166II	GTNNAC	2 cut(s)	23, 676
Hpy188I	TCNGA	3 cut(s)	175, 381, 431
Hpy188III	TCNNGA	4 cut(s)	160, 338, 370, 572
Hpy8I	GTNNAC	2 cut(s)	23, 676
Hpy99I	CGWCG	2 cut(s)	351, 650
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	3 cut(s)	185, 346, 374
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	3 cut(s)	185, 346, 374
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	1 cut(s)	351
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	151, 420, 613
LmnI	GCTCC	3 cut(s)	31, 37, 114
Lsp1109I	GCAGC	4 cut(s)	118, 313, 407, 506
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	3 cut(s)	185, 346, 374
MaeIII	GTNAC	3 cut(s)	179, 338, 541
MalI	GATC	3 cut(s)	153, 422, 615
MboI	GATC	3 cut(s)	151, 420, 613
MboII	GAAGA	5 cut(s)	217, 289, 587, 617, 668
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	682, 691
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	16, 130, 144, 382, 385, 425, 520, 571
MseI	TTAA	5 cut(s)	597, 636, 662, 689, 694
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	15, 238
MspR9I	CCNGG	2 cut(s)	312, 400
MvaI	CCWGG	2 cut(s)	312, 400
MvnI	CGCG	4 cut(s)	78, 351, 353, 548
MwoI	GCNNNNNNNGC	5 cut(s)	100, 106, 247, 392, 401
NdeII	GATC	3 cut(s)	151, 420, 613
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	2 cut(s)	85, 148
NmuCI	GTSAC	3 cut(s)	179, 338, 541
PcsI	WCGNNNNNNNCGW	3 cut(s)	343, 609, 618
PfeI	GAWTC	2 cut(s)	334, 568
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	8 cut(s)	102, 105, 108, 303, 328, 397, 418, 496
Ple19I	CGATCG	2 cut(s)	423, 616
PmaCI	CACGTG	1 cut(s)	186
PmlI	CACGTG	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	186
PshAI	GACNNNNGTC	2 cut(s)	186, 345
Psp6I	CCWGG	2 cut(s)	310, 398
PspCI	CACGTG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	310, 398
PspN4I	GGNNCC	2 cut(s)	85, 148
PspPI	GGNCC	1 cut(s)	73
PvuI	CGATCG	2 cut(s)	423, 616
RsaI	GTAC	2 cut(s)	290, 478
RsaNI	GTAC	2 cut(s)	289, 477
SacII	CCGCGG	1 cut(s)	79
SaqAI	TTAA	5 cut(s)	597, 636, 662, 689, 694
SatI	GCNGC	8 cut(s)	101, 104, 107, 302, 327, 396, 417, 495
Sau3AI	GATC	3 cut(s)	151, 420, 613
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	312, 400
SduI	GDGCHC	1 cut(s)	42
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	682, 691
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	310, 398
StyI	CCWWGG	2 cut(s)	27, 220
TaiI	ACGT	3 cut(s)	188, 349, 377
TaqI	TCGA	2 cut(s)	423, 612
TasI	AATT	2 cut(s)	682, 691
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	4 cut(s)	103, 106, 304, 419
TfiI	GAWTC	2 cut(s)	334, 568
Tru1I	TTAA	5 cut(s)	597, 636, 662, 689, 694
Tru9I	TTAA	5 cut(s)	597, 636, 662, 689, 694
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	179, 338, 541
TseI	GCWGC	4 cut(s)	106, 326, 395, 494
Tsp45I	GTSAC	3 cut(s)	179, 338, 541
TspDTI	ATGAA	3 cut(s)	218, 290, 669
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.